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commit: 7c67d4f1945c5407327f63d6e422e63069e5611c |
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Author: Aisha Tammy <gentoo <AT> aisha <DOT> cc> |
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AuthorDate: Sun Sep 27 15:30:24 2020 +0000 |
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Commit: Aisha Tammy <gentoo <AT> aisha <DOT> cc> |
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CommitDate: Sun Sep 27 15:31:44 2020 +0000 |
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URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=7c67d4f1 |
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|
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sys-cluster/{mpich{,2},mvapich,openmpi}: drop packages |
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|
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present in ::gentoo |
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|
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Package-Manager: Portage-3.0.8, Repoman-3.0.1 |
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Signed-off-by: Aisha Tammy <gentoo <AT> aisha.cc> |
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|
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sys-cluster/mpich/files/eselect.mpi.mpich | 8 - |
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sys-cluster/mpich/files/mpich-3.2.1-hwloc2.patch | 42 ----- |
17 |
sys-cluster/mpich/metadata.xml | 21 --- |
18 |
sys-cluster/mpich/mpich-3.0.4.ebuild | 121 ------------- |
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sys-cluster/mpich/mpich-3.1.3-r2.ebuild | 121 ------------- |
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sys-cluster/mpich/mpich-3.1.4-r1.ebuild | 121 ------------- |
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sys-cluster/mpich/mpich-3.2-r1.ebuild | 121 ------------- |
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sys-cluster/mpich/mpich-3.2-r2.ebuild | 136 --------------- |
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sys-cluster/mpich/mpich-3.2.1.ebuild | 140 --------------- |
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.../0001-MPD_CONF_FILE-should-be-readable.patch | 32 ---- |
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.../files/0002-mpd_conf_file-search-order.patch | 98 ----------- |
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.../0003-Fix-pkgconfig-for-mpich2-ch3-v1.2.1.patch | 36 ---- |
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.../files/0003-Fix-pkgconfig-for-mpich2-ch3.patch | 36 ---- |
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sys-cluster/mpich2/files/eselect.mpi.mpich2 | 8 - |
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.../mpich2/files/fix-pkg-config-files.patch | 119 ------------- |
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sys-cluster/mpich2/files/mpd.conf | 2 - |
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.../mpich2-1.0.8-gforker-install-alt-fix.patch | 12 -- |
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.../mpich2/files/mpich2-1.0.8-mpdconf-env.patch | 112 ------------ |
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.../mpich2/files/mpich2-1.0.8-pkgconfig.patch | 17 -- |
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.../files/mpich2-1.2.1-fix-missing-libs.patch | 33 ---- |
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...2-1.3-libtvmpich2.so-respect-user-LDFLAGS.patch | 25 --- |
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sys-cluster/mpich2/files/mpich2-hvector.patch | 63 ------- |
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sys-cluster/mpich2/metadata.xml | 21 --- |
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sys-cluster/mpich2/mpich2-1.5.ebuild | 127 -------------- |
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sys-cluster/mvapich2/files/eselect.mpi.mvapich2 | 8 - |
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sys-cluster/mvapich2/metadata.xml | 16 -- |
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sys-cluster/mvapich2/mvapich2-1.6-r1.ebuild | 145 --------------- |
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sys-cluster/openmpi/files/eselect.mpi.openmpi | 8 - |
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...le-malloc-override-inside-of-Gentoo-sandb.patch | 42 ----- |
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sys-cluster/openmpi/files/openmpi-ltdl.patch | 78 --------- |
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sys-cluster/openmpi/files/openmpi-r24328.patch | 54 ------ |
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sys-cluster/openmpi/metadata.xml | 21 --- |
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sys-cluster/openmpi/openmpi-1.10.7.ebuild | 194 --------------------- |
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sys-cluster/openmpi/openmpi-1.8.8.ebuild | 180 ------------------- |
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sys-cluster/openmpi/openmpi-2.0.4.ebuild | 177 ------------------- |
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sys-cluster/openmpi/openmpi-2.1.6.ebuild | 176 ------------------- |
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sys-cluster/openmpi/openmpi-3.0.4.ebuild | 173 ------------------ |
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sys-cluster/openmpi/openmpi-3.1.4.ebuild | 173 ------------------ |
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sys-cluster/openmpi/openmpi-4.0.1-r2.ebuild | 172 ------------------ |
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39 files changed, 3189 deletions(-) |
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|
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diff --git a/sys-cluster/mpich/files/eselect.mpi.mpich b/sys-cluster/mpich/files/eselect.mpi.mpich |
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deleted file mode 100644 |
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index 703d71176..000000000 |
59 |
--- a/sys-cluster/mpich/files/eselect.mpi.mpich |
60 |
+++ /dev/null |
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@@ -1,8 +0,0 @@ |
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-MPI_CC=@ROOT@usr/bin/mpicc |
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-MPI_CXX=@ROOT@usr/bin/mpicxx |
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-MPI_F77=@ROOT@usr/bin/mpif77 |
65 |
-MPI_FC=@ROOT@usr/bin/mpif90 |
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-CLASS_BASE_MPI_IMP=@BASE_IMP@ |
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-PATH=@ROOT@usr/bin |
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-MANPATH=@ROOT@usr/share/man |
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-LD_LIBRARY_PATH=@ROOT@usr/@LIBDIR@ |
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|
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diff --git a/sys-cluster/mpich/files/mpich-3.2.1-hwloc2.patch b/sys-cluster/mpich/files/mpich-3.2.1-hwloc2.patch |
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deleted file mode 100644 |
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index 415a40932..000000000 |
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--- a/sys-cluster/mpich/files/mpich-3.2.1-hwloc2.patch |
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+++ /dev/null |
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@@ -1,42 +0,0 @@ |
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-From ab59467c51206ac72546e4b734a1b41bf3d0345d Mon Sep 17 00:00:00 2001 |
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-From: Kavitha Tiptur Madhu <kmadhu@×××.gov> |
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-Date: Fri, 19 Jan 2018 10:44:56 -0600 |
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-Subject: [PATCH] hydra: remove replicate membind option |
81 |
- |
82 |
-The "replicate" option of membind is not well supported on a number of |
83 |
-operating systems, and has been removed from hwloc (in v2.0) as well. |
84 |
-This patch gets rid of that option in Hydra, in preparation for an |
85 |
-upgrade to hwloc-2.0. |
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- |
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-Signed-off-by: Pavan Balaji <balaji@×××.gov> |
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---- |
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- src/pm/hydra/tools/topo/hwloc/topo_hwloc.c | 3 --- |
90 |
- src/pm/hydra/ui/mpich/utils.c | 1 - |
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- 2 files changed, 4 deletions(-) |
92 |
- |
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-diff --git a/src/pm/hydra/tools/topo/hwloc/topo_hwloc.c b/src/pm/hydra/tools/topo/hwloc/topo_hwloc.c |
94 |
-index ce15fe7702..74029fad61 100644 |
95 |
---- a/src/pm/hydra/tools/topo/hwloc/topo_hwloc.c |
96 |
-+++ b/src/pm/hydra/tools/topo/hwloc/topo_hwloc.c |
97 |
-@@ -424,9 +424,6 @@ HYD_status HYDT_topo_hwloc_init(const char *binding, const char *mapping, const |
98 |
- else if (!strncmp(membind, "interleave:", strlen("interleave:"))) { |
99 |
- HYDT_topo_hwloc_info.membind = HWLOC_MEMBIND_INTERLEAVE; |
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- } |
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-- else if (!strncmp(membind, "replicate:", strlen("replicate:"))) { |
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-- HYDT_topo_hwloc_info.membind = HWLOC_MEMBIND_REPLICATE; |
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-- } |
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- else { |
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- HYDU_ERR_SETANDJUMP(status, HYD_INTERNAL_ERROR, |
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- "unrecognized membind policy \"%s\"\n", membind); |
107 |
-diff --git a/src/pm/hydra/ui/mpich/utils.c b/src/pm/hydra/ui/mpich/utils.c |
108 |
-index 9e18a754b5..a9c9dde015 100644 |
109 |
---- a/src/pm/hydra/ui/mpich/utils.c |
110 |
-+++ b/src/pm/hydra/ui/mpich/utils.c |
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-@@ -940,7 +940,6 @@ static void bind_to_help_fn(void) |
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- printf(" nexttouch -- closest to process that next touches memory\n"); |
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- printf(" bind:<list> -- bind to memory node list\n"); |
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- printf(" interleave:<list> -- interleave among memory node list\n"); |
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-- printf(" replicate:<list> -- replicate among memory node list\n"); |
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- } |
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- |
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- static HYD_status bind_to_fn(char *arg, char ***argv) |
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|
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diff --git a/sys-cluster/mpich/metadata.xml b/sys-cluster/mpich/metadata.xml |
121 |
deleted file mode 100644 |
122 |
index 6cbe440fa..000000000 |
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--- a/sys-cluster/mpich/metadata.xml |
124 |
+++ /dev/null |
125 |
@@ -1,21 +0,0 @@ |
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-<?xml version="1.0" encoding="UTF-8"?> |
127 |
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
128 |
-<pkgmetadata> |
129 |
- <maintainer type="person"> |
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- <email>jsbronder@g.o</email> |
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- <name>Justin Bronder</name> |
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- </maintainer> |
133 |
- <maintainer type="person"> |
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- <email>balaji@×××××××.gov</email> |
135 |
- <name>Pavan Balaji</name> |
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- <description>Upstream Contact</description> |
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- </maintainer> |
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- <maintainer type="project"> |
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- <email>cluster@g.o</email> |
140 |
- <name>Gentoo Cluster Project</name> |
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- </maintainer> |
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- <use> |
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- <flag name="mpi-threads">Enable MPI_THREAD_MULTIPLE</flag> |
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- <flag name="romio">Build the ROMIO MPI-IO component</flag> |
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- </use> |
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-</pkgmetadata> |
147 |
|
148 |
diff --git a/sys-cluster/mpich/mpich-3.0.4.ebuild b/sys-cluster/mpich/mpich-3.0.4.ebuild |
149 |
deleted file mode 100644 |
150 |
index 6a32941cd..000000000 |
151 |
--- a/sys-cluster/mpich/mpich-3.0.4.ebuild |
152 |
+++ /dev/null |
153 |
@@ -1,121 +0,0 @@ |
154 |
-# Copyright 1999-2014 Gentoo Foundation |
155 |
-# Distributed under the terms of the GNU General Public License v2 |
156 |
- |
157 |
-EAPI=5 |
158 |
- |
159 |
-FORTRAN_NEEDED=fortran |
160 |
- |
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-inherit fortran-2 mpi |
162 |
- |
163 |
-MY_PV=${PV/_/} |
164 |
-DESCRIPTION="A high performance and portable MPI implementation" |
165 |
-HOMEPAGE="http://www.mpich.org/" |
166 |
-SRC_URI="http://www.mpich.org/static/downloads/${PV}/${P}.tar.gz" |
167 |
- |
168 |
-SLOT="0" |
169 |
-LICENSE="mpich" |
170 |
-KEYWORDS="~amd64 ~x86" |
171 |
-IUSE="+cxx doc fortran mpi-threads romio threads" |
172 |
- |
173 |
-COMMON_DEPEND=" |
174 |
- dev-libs/libaio |
175 |
- sys-apps/hwloc |
176 |
- romio? ( net-fs/nfs-utils ) |
177 |
- $(mpi_imp_deplist)" |
178 |
- |
179 |
-DEPEND="${COMMON_DEPEND} |
180 |
- dev-lang/perl |
181 |
- sys-devel/libtool" |
182 |
- |
183 |
-RDEPEND="${COMMON_DEPEND}" |
184 |
- |
185 |
-S="${WORKDIR}"/${PN}-${MY_PV} |
186 |
- |
187 |
-pkg_setup() { |
188 |
- FORTRAN_STANDARD="77 90" |
189 |
- fortran-2_pkg_setup |
190 |
- MPI_ESELECT_FILE="eselect.mpi.mpich" |
191 |
- |
192 |
- if use mpi-threads && ! use threads; then |
193 |
- ewarn "mpi-threads requires threads, assuming that's what you want" |
194 |
- fi |
195 |
-} |
196 |
- |
197 |
-src_prepare() { |
198 |
- # Using MPICHLIB_LDFLAGS doesn't seem to fully work. |
199 |
- sed -i 's| *@WRAPPER_LDFLAGS@ *||' \ |
200 |
- src/packaging/pkgconfig/mpich.pc.in \ |
201 |
- src/env/*.in \ |
202 |
- || die |
203 |
-} |
204 |
- |
205 |
-src_configure() { |
206 |
- local c="--enable-shared" |
207 |
- |
208 |
- # The configure statements can be somewhat confusing, as they |
209 |
- # don't all show up in the top level configure, however, they |
210 |
- # are picked up in the children directories. |
211 |
- |
212 |
- if use mpi-threads; then |
213 |
- # MPI-THREAD requries threading. |
214 |
- c="${c} --with-thread-package=pthreads" |
215 |
- c="${c} --enable-threads=runtime" |
216 |
- else |
217 |
- if use threads ; then |
218 |
- c="${c} --with-thread-package=pthreads" |
219 |
- else |
220 |
- c="${c} --with-thread-package=none" |
221 |
- fi |
222 |
- c="${c} --enable-threads=single" |
223 |
- fi |
224 |
- |
225 |
- if ! mpi_classed; then |
226 |
- c="${c} --sysconfdir=${EPREFIX}/etc/${PN}" |
227 |
- c="${c} --docdir=${EPREFIX}/usr/share/doc/${PF}" |
228 |
- else |
229 |
- c="${c} --docdir=$(mpi_root)/usr/share/doc/${PF}" |
230 |
- fi |
231 |
- |
232 |
- export MPICHLIB_CFLAGS=${CFLAGS} |
233 |
- export MPICHLIB_CPPFLAGS=${CPPFLAGS} |
234 |
- export MPICHLIB_CXXFLAGS=${CXXFLAGS} |
235 |
- export MPICHLIB_FFLAGS=${FFLAGS} |
236 |
- export MPICHLIB_FCFLAGS=${FCFLAGS} |
237 |
- export MPICHLIB_LDFLAGS=${LDFLAGS} |
238 |
- unset CFLAGS CPPFLAGS CXXFLAGS FFLAGS FCFLAGS LDFLAGS |
239 |
- |
240 |
- econf $(mpi_econf_args) ${c} \ |
241 |
- --with-pm=hydra \ |
242 |
- --disable-mpe \ |
243 |
- --disable-fast \ |
244 |
- --enable-smpcoll \ |
245 |
- --enable-versioning \ |
246 |
- --with-hwloc-prefix=/usr \ |
247 |
- $(use_enable romio) \ |
248 |
- $(use_enable cxx) \ |
249 |
- $(use_enable fortran f77) \ |
250 |
- $(use_enable fortran fc) |
251 |
-} |
252 |
- |
253 |
-src_test() { |
254 |
- emake -j1 check |
255 |
-} |
256 |
- |
257 |
-src_install() { |
258 |
- local d=$(echo ${ED}/$(mpi_root)/ | sed 's,///*,/,g') |
259 |
- |
260 |
- default |
261 |
- |
262 |
- mpi_dodir /usr/share/doc/${PF} |
263 |
- mpi_dodoc COPYRIGHT README{,.envvar} CHANGES RELEASE_NOTES |
264 |
- mpi_newdoc src/pm/hydra/README README.hydra |
265 |
- if use romio; then |
266 |
- mpi_newdoc src/mpi/romio/README README.romio |
267 |
- fi |
268 |
- |
269 |
- if ! use doc; then |
270 |
- rm -rf "${d}"usr/share/doc/${PF}/www* |
271 |
- fi |
272 |
- |
273 |
- mpi_imp_add_eselect |
274 |
-} |
275 |
|
276 |
diff --git a/sys-cluster/mpich/mpich-3.1.3-r2.ebuild b/sys-cluster/mpich/mpich-3.1.3-r2.ebuild |
277 |
deleted file mode 100644 |
278 |
index 4657ded7f..000000000 |
279 |
--- a/sys-cluster/mpich/mpich-3.1.3-r2.ebuild |
280 |
+++ /dev/null |
281 |
@@ -1,121 +0,0 @@ |
282 |
-# Copyright 1999-2014 Gentoo Foundation |
283 |
-# Distributed under the terms of the GNU General Public License v2 |
284 |
- |
285 |
-EAPI=5 |
286 |
- |
287 |
-FORTRAN_NEEDED=fortran |
288 |
- |
289 |
-inherit fortran-2 mpi |
290 |
- |
291 |
-MY_PV=${PV/_/} |
292 |
-DESCRIPTION="A high performance and portable MPI implementation" |
293 |
-HOMEPAGE="http://www.mpich.org/" |
294 |
-SRC_URI="http://www.mpich.org/static/downloads/${PV}/${P}.tar.gz" |
295 |
- |
296 |
-SLOT="0" |
297 |
-LICENSE="mpich" |
298 |
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" |
299 |
-IUSE="+cxx doc fortran mpi-threads romio threads" |
300 |
- |
301 |
-COMMON_DEPEND=" |
302 |
- dev-libs/libaio |
303 |
- >=sys-apps/hwloc-1.9 |
304 |
- romio? ( net-fs/nfs-utils ) |
305 |
- $(mpi_imp_deplist)" |
306 |
- |
307 |
-DEPEND="${COMMON_DEPEND} |
308 |
- dev-lang/perl |
309 |
- sys-devel/libtool" |
310 |
- |
311 |
-RDEPEND="${COMMON_DEPEND}" |
312 |
- |
313 |
-S="${WORKDIR}"/${PN}-${MY_PV} |
314 |
- |
315 |
-pkg_setup() { |
316 |
- FORTRAN_STANDARD="77 90" |
317 |
- fortran-2_pkg_setup |
318 |
- MPI_ESELECT_FILE="eselect.mpi.mpich" |
319 |
- |
320 |
- if use mpi-threads && ! use threads; then |
321 |
- ewarn "mpi-threads requires threads, assuming that's what you want" |
322 |
- fi |
323 |
-} |
324 |
- |
325 |
-src_prepare() { |
326 |
- # Using MPICHLIB_LDFLAGS doesn't seem to fully work. |
327 |
- sed -i 's| *@WRAPPER_LDFLAGS@ *||' \ |
328 |
- src/packaging/pkgconfig/mpich.pc.in \ |
329 |
- src/env/*.in \ |
330 |
- || die |
331 |
-} |
332 |
- |
333 |
-src_configure() { |
334 |
- local c="--enable-shared" |
335 |
- |
336 |
- # The configure statements can be somewhat confusing, as they |
337 |
- # don't all show up in the top level configure, however, they |
338 |
- # are picked up in the children directories. |
339 |
- |
340 |
- if use mpi-threads; then |
341 |
- # MPI-THREAD requries threading. |
342 |
- c="${c} --with-thread-package=pthreads" |
343 |
- c="${c} --enable-threads=runtime" |
344 |
- else |
345 |
- if use threads ; then |
346 |
- c="${c} --with-thread-package=pthreads" |
347 |
- else |
348 |
- c="${c} --with-thread-package=none" |
349 |
- fi |
350 |
- c="${c} --enable-threads=single" |
351 |
- fi |
352 |
- |
353 |
- if ! mpi_classed; then |
354 |
- c="${c} --sysconfdir=${EPREFIX}/etc/${PN}" |
355 |
- c="${c} --docdir=${EPREFIX}/usr/share/doc/${PF}" |
356 |
- else |
357 |
- c="${c} --docdir=$(mpi_root)/usr/share/doc/${PF}" |
358 |
- fi |
359 |
- |
360 |
- export MPICHLIB_CFLAGS=${CFLAGS} |
361 |
- export MPICHLIB_CPPFLAGS=${CPPFLAGS} |
362 |
- export MPICHLIB_CXXFLAGS=${CXXFLAGS} |
363 |
- export MPICHLIB_FFLAGS=${FFLAGS} |
364 |
- export MPICHLIB_FCFLAGS=${FCFLAGS} |
365 |
- export MPICHLIB_LDFLAGS=${LDFLAGS} |
366 |
- unset CFLAGS CPPFLAGS CXXFLAGS FFLAGS FCFLAGS LDFLAGS |
367 |
- |
368 |
- econf $(mpi_econf_args) ${c} \ |
369 |
- --with-pm=hydra \ |
370 |
- --disable-mpe \ |
371 |
- --disable-fast \ |
372 |
- --enable-smpcoll \ |
373 |
- --enable-versioning \ |
374 |
- --with-hwloc-prefix=/usr \ |
375 |
- $(use_enable romio) \ |
376 |
- $(use_enable cxx) \ |
377 |
- $(use_enable fortran f77) \ |
378 |
- $(use_enable fortran fc) |
379 |
-} |
380 |
- |
381 |
-src_test() { |
382 |
- emake -j1 check |
383 |
-} |
384 |
- |
385 |
-src_install() { |
386 |
- local d=$(echo ${ED}/$(mpi_root)/ | sed 's,///*,/,g') |
387 |
- |
388 |
- default |
389 |
- |
390 |
- mpi_dodir /usr/share/doc/${PF} |
391 |
- mpi_dodoc COPYRIGHT README{,.envvar} CHANGES RELEASE_NOTES |
392 |
- mpi_newdoc src/pm/hydra/README README.hydra |
393 |
- if use romio; then |
394 |
- mpi_newdoc src/mpi/romio/README README.romio |
395 |
- fi |
396 |
- |
397 |
- if ! use doc; then |
398 |
- rm -rf "${d}"usr/share/doc/${PF}/www* |
399 |
- fi |
400 |
- |
401 |
- mpi_imp_add_eselect |
402 |
-} |
403 |
|
404 |
diff --git a/sys-cluster/mpich/mpich-3.1.4-r1.ebuild b/sys-cluster/mpich/mpich-3.1.4-r1.ebuild |
405 |
deleted file mode 100644 |
406 |
index 2db9c9e60..000000000 |
407 |
--- a/sys-cluster/mpich/mpich-3.1.4-r1.ebuild |
408 |
+++ /dev/null |
409 |
@@ -1,121 +0,0 @@ |
410 |
-# Copyright 1999-2015 Gentoo Foundation |
411 |
-# Distributed under the terms of the GNU General Public License v2 |
412 |
- |
413 |
-EAPI=5 |
414 |
- |
415 |
-FORTRAN_NEEDED=fortran |
416 |
- |
417 |
-inherit fortran-2 mpi |
418 |
- |
419 |
-MY_PV=${PV/_/} |
420 |
-DESCRIPTION="A high performance and portable MPI implementation" |
421 |
-HOMEPAGE="http://www.mpich.org/" |
422 |
-SRC_URI="http://www.mpich.org/static/downloads/${PV}/${P}.tar.gz" |
423 |
- |
424 |
-SLOT="0" |
425 |
-LICENSE="mpich" |
426 |
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" |
427 |
-IUSE="+cxx doc fortran mpi-threads romio threads" |
428 |
- |
429 |
-COMMON_DEPEND=" |
430 |
- dev-libs/libaio |
431 |
- >=sys-apps/hwloc-1.9 |
432 |
- romio? ( net-fs/nfs-utils ) |
433 |
- $(mpi_imp_deplist)" |
434 |
- |
435 |
-DEPEND="${COMMON_DEPEND} |
436 |
- dev-lang/perl |
437 |
- sys-devel/libtool" |
438 |
- |
439 |
-RDEPEND="${COMMON_DEPEND}" |
440 |
- |
441 |
-S="${WORKDIR}"/${PN}-${MY_PV} |
442 |
- |
443 |
-pkg_setup() { |
444 |
- FORTRAN_STANDARD="77 90" |
445 |
- fortran-2_pkg_setup |
446 |
- MPI_ESELECT_FILE="eselect.mpi.mpich" |
447 |
- |
448 |
- if use mpi-threads && ! use threads; then |
449 |
- ewarn "mpi-threads requires threads, assuming that's what you want" |
450 |
- fi |
451 |
-} |
452 |
- |
453 |
-src_prepare() { |
454 |
- # Using MPICHLIB_LDFLAGS doesn't seem to fully work. |
455 |
- sed -i 's| *@WRAPPER_LDFLAGS@ *||' \ |
456 |
- src/packaging/pkgconfig/mpich.pc.in \ |
457 |
- src/env/*.in \ |
458 |
- || die |
459 |
-} |
460 |
- |
461 |
-src_configure() { |
462 |
- local c="--enable-shared" |
463 |
- local hydra_c="--with-hwloc-prefix=/usr" |
464 |
- |
465 |
- # The configure statements can be somewhat confusing, as they |
466 |
- # don't all show up in the top level configure, however, they |
467 |
- # are picked up in the children directories. Hence the separate |
468 |
- # local vars. |
469 |
- |
470 |
- if use mpi-threads; then |
471 |
- # MPI-THREAD requries threading. |
472 |
- c="${c} --with-thread-package=pthreads" |
473 |
- c="${c} --enable-threads=runtime" |
474 |
- else |
475 |
- if use threads ; then |
476 |
- c="${c} --with-thread-package=pthreads" |
477 |
- else |
478 |
- c="${c} --with-thread-package=none" |
479 |
- fi |
480 |
- c="${c} --enable-threads=single" |
481 |
- fi |
482 |
- |
483 |
- if ! mpi_classed; then |
484 |
- c="${c} --sysconfdir=${EPREFIX}/etc/${PN}" |
485 |
- c="${c} --docdir=${EPREFIX}/usr/share/doc/${PF}" |
486 |
- else |
487 |
- c="${c} --docdir=$(mpi_root)/usr/share/doc/${PF}" |
488 |
- fi |
489 |
- |
490 |
- export MPICHLIB_CFLAGS=${CFLAGS} |
491 |
- export MPICHLIB_CPPFLAGS=${CPPFLAGS} |
492 |
- export MPICHLIB_CXXFLAGS=${CXXFLAGS} |
493 |
- export MPICHLIB_FFLAGS=${FFLAGS} |
494 |
- export MPICHLIB_FCFLAGS=${FCFLAGS} |
495 |
- export MPICHLIB_LDFLAGS=${LDFLAGS} |
496 |
- unset CFLAGS CPPFLAGS CXXFLAGS FFLAGS FCFLAGS LDFLAGS |
497 |
- |
498 |
- econf $(mpi_econf_args) ${c} \ |
499 |
- --with-pm=hydra \ |
500 |
- --disable-fast \ |
501 |
- --enable-versioning \ |
502 |
- ${hydra_c} \ |
503 |
- $(use_enable romio) \ |
504 |
- $(use_enable cxx) \ |
505 |
- $(use_enable fortran f77) \ |
506 |
- $(use_enable fortran fc) |
507 |
-} |
508 |
- |
509 |
-src_test() { |
510 |
- emake -j1 check |
511 |
-} |
512 |
- |
513 |
-src_install() { |
514 |
- local d=$(echo ${ED}/$(mpi_root)/ | sed 's,///*,/,g') |
515 |
- |
516 |
- default |
517 |
- |
518 |
- mpi_dodir /usr/share/doc/${PF} |
519 |
- mpi_dodoc COPYRIGHT README{,.envvar} CHANGES RELEASE_NOTES |
520 |
- mpi_newdoc src/pm/hydra/README README.hydra |
521 |
- if use romio; then |
522 |
- mpi_newdoc src/mpi/romio/README README.romio |
523 |
- fi |
524 |
- |
525 |
- if ! use doc; then |
526 |
- rm -rf "${d}"usr/share/doc/${PF}/www* |
527 |
- fi |
528 |
- |
529 |
- mpi_imp_add_eselect |
530 |
-} |
531 |
|
532 |
diff --git a/sys-cluster/mpich/mpich-3.2-r1.ebuild b/sys-cluster/mpich/mpich-3.2-r1.ebuild |
533 |
deleted file mode 100644 |
534 |
index 2db9c9e60..000000000 |
535 |
--- a/sys-cluster/mpich/mpich-3.2-r1.ebuild |
536 |
+++ /dev/null |
537 |
@@ -1,121 +0,0 @@ |
538 |
-# Copyright 1999-2015 Gentoo Foundation |
539 |
-# Distributed under the terms of the GNU General Public License v2 |
540 |
- |
541 |
-EAPI=5 |
542 |
- |
543 |
-FORTRAN_NEEDED=fortran |
544 |
- |
545 |
-inherit fortran-2 mpi |
546 |
- |
547 |
-MY_PV=${PV/_/} |
548 |
-DESCRIPTION="A high performance and portable MPI implementation" |
549 |
-HOMEPAGE="http://www.mpich.org/" |
550 |
-SRC_URI="http://www.mpich.org/static/downloads/${PV}/${P}.tar.gz" |
551 |
- |
552 |
-SLOT="0" |
553 |
-LICENSE="mpich" |
554 |
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" |
555 |
-IUSE="+cxx doc fortran mpi-threads romio threads" |
556 |
- |
557 |
-COMMON_DEPEND=" |
558 |
- dev-libs/libaio |
559 |
- >=sys-apps/hwloc-1.9 |
560 |
- romio? ( net-fs/nfs-utils ) |
561 |
- $(mpi_imp_deplist)" |
562 |
- |
563 |
-DEPEND="${COMMON_DEPEND} |
564 |
- dev-lang/perl |
565 |
- sys-devel/libtool" |
566 |
- |
567 |
-RDEPEND="${COMMON_DEPEND}" |
568 |
- |
569 |
-S="${WORKDIR}"/${PN}-${MY_PV} |
570 |
- |
571 |
-pkg_setup() { |
572 |
- FORTRAN_STANDARD="77 90" |
573 |
- fortran-2_pkg_setup |
574 |
- MPI_ESELECT_FILE="eselect.mpi.mpich" |
575 |
- |
576 |
- if use mpi-threads && ! use threads; then |
577 |
- ewarn "mpi-threads requires threads, assuming that's what you want" |
578 |
- fi |
579 |
-} |
580 |
- |
581 |
-src_prepare() { |
582 |
- # Using MPICHLIB_LDFLAGS doesn't seem to fully work. |
583 |
- sed -i 's| *@WRAPPER_LDFLAGS@ *||' \ |
584 |
- src/packaging/pkgconfig/mpich.pc.in \ |
585 |
- src/env/*.in \ |
586 |
- || die |
587 |
-} |
588 |
- |
589 |
-src_configure() { |
590 |
- local c="--enable-shared" |
591 |
- local hydra_c="--with-hwloc-prefix=/usr" |
592 |
- |
593 |
- # The configure statements can be somewhat confusing, as they |
594 |
- # don't all show up in the top level configure, however, they |
595 |
- # are picked up in the children directories. Hence the separate |
596 |
- # local vars. |
597 |
- |
598 |
- if use mpi-threads; then |
599 |
- # MPI-THREAD requries threading. |
600 |
- c="${c} --with-thread-package=pthreads" |
601 |
- c="${c} --enable-threads=runtime" |
602 |
- else |
603 |
- if use threads ; then |
604 |
- c="${c} --with-thread-package=pthreads" |
605 |
- else |
606 |
- c="${c} --with-thread-package=none" |
607 |
- fi |
608 |
- c="${c} --enable-threads=single" |
609 |
- fi |
610 |
- |
611 |
- if ! mpi_classed; then |
612 |
- c="${c} --sysconfdir=${EPREFIX}/etc/${PN}" |
613 |
- c="${c} --docdir=${EPREFIX}/usr/share/doc/${PF}" |
614 |
- else |
615 |
- c="${c} --docdir=$(mpi_root)/usr/share/doc/${PF}" |
616 |
- fi |
617 |
- |
618 |
- export MPICHLIB_CFLAGS=${CFLAGS} |
619 |
- export MPICHLIB_CPPFLAGS=${CPPFLAGS} |
620 |
- export MPICHLIB_CXXFLAGS=${CXXFLAGS} |
621 |
- export MPICHLIB_FFLAGS=${FFLAGS} |
622 |
- export MPICHLIB_FCFLAGS=${FCFLAGS} |
623 |
- export MPICHLIB_LDFLAGS=${LDFLAGS} |
624 |
- unset CFLAGS CPPFLAGS CXXFLAGS FFLAGS FCFLAGS LDFLAGS |
625 |
- |
626 |
- econf $(mpi_econf_args) ${c} \ |
627 |
- --with-pm=hydra \ |
628 |
- --disable-fast \ |
629 |
- --enable-versioning \ |
630 |
- ${hydra_c} \ |
631 |
- $(use_enable romio) \ |
632 |
- $(use_enable cxx) \ |
633 |
- $(use_enable fortran f77) \ |
634 |
- $(use_enable fortran fc) |
635 |
-} |
636 |
- |
637 |
-src_test() { |
638 |
- emake -j1 check |
639 |
-} |
640 |
- |
641 |
-src_install() { |
642 |
- local d=$(echo ${ED}/$(mpi_root)/ | sed 's,///*,/,g') |
643 |
- |
644 |
- default |
645 |
- |
646 |
- mpi_dodir /usr/share/doc/${PF} |
647 |
- mpi_dodoc COPYRIGHT README{,.envvar} CHANGES RELEASE_NOTES |
648 |
- mpi_newdoc src/pm/hydra/README README.hydra |
649 |
- if use romio; then |
650 |
- mpi_newdoc src/mpi/romio/README README.romio |
651 |
- fi |
652 |
- |
653 |
- if ! use doc; then |
654 |
- rm -rf "${d}"usr/share/doc/${PF}/www* |
655 |
- fi |
656 |
- |
657 |
- mpi_imp_add_eselect |
658 |
-} |
659 |
|
660 |
diff --git a/sys-cluster/mpich/mpich-3.2-r2.ebuild b/sys-cluster/mpich/mpich-3.2-r2.ebuild |
661 |
deleted file mode 100644 |
662 |
index dc2e80944..000000000 |
663 |
--- a/sys-cluster/mpich/mpich-3.2-r2.ebuild |
664 |
+++ /dev/null |
665 |
@@ -1,136 +0,0 @@ |
666 |
-# Copyright 1999-2016 Gentoo Foundation |
667 |
-# Distributed under the terms of the GNU General Public License v2 |
668 |
- |
669 |
-EAPI=6 |
670 |
- |
671 |
-FORTRAN_NEEDED=fortran |
672 |
-FORTRAN_STANDARD="77 90" |
673 |
- |
674 |
-inherit fortran-2 multilib-minimal mpi |
675 |
- |
676 |
-MY_PV=${PV/_/} |
677 |
-DESCRIPTION="A high performance and portable MPI implementation" |
678 |
-HOMEPAGE="http://www.mpich.org/" |
679 |
-SRC_URI="http://www.mpich.org/static/downloads/${PV}/${P}.tar.gz" |
680 |
- |
681 |
-SLOT="0" |
682 |
-LICENSE="mpich" |
683 |
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" |
684 |
-IUSE="+cxx doc fortran mpi-threads romio threads" |
685 |
- |
686 |
-COMMON_DEPEND=" |
687 |
- >=dev-libs/libaio-0.3.109-r5[${MULTILIB_USEDEP}] |
688 |
- >=sys-apps/hwloc-1.10.0-r2[${MULTILIB_USEDEP}] |
689 |
- romio? ( net-fs/nfs-utils ) |
690 |
- $(mpi_imp_deplist)" |
691 |
- |
692 |
-DEPEND="${COMMON_DEPEND} |
693 |
- dev-lang/perl |
694 |
- sys-devel/libtool" |
695 |
- |
696 |
-RDEPEND="${COMMON_DEPEND}" |
697 |
- |
698 |
-S="${WORKDIR}"/${PN}-${MY_PV} |
699 |
- |
700 |
-MULTILIB_WRAPPED_HEADERS=( |
701 |
- /usr/include/mpicxx.h |
702 |
- /usr/include/mpi.h |
703 |
- /usr/include/opa_config.h |
704 |
-) |
705 |
- |
706 |
-src_prepare() { |
707 |
- default |
708 |
- |
709 |
- # Using MPICHLIB_LDFLAGS doesn't seem to fully work. |
710 |
- sed -i 's| *@WRAPPER_LDFLAGS@ *||' \ |
711 |
- src/packaging/pkgconfig/mpich.pc.in \ |
712 |
- src/env/*.in \ |
713 |
- || die |
714 |
-} |
715 |
- |
716 |
-multilib_src_configure() { |
717 |
- # The configure statements can be somewhat confusing, as they |
718 |
- # don't all show up in the top level configure, however, they |
719 |
- # are picked up in the children directories. Hence the separate |
720 |
- # local vars. |
721 |
- |
722 |
- local c= |
723 |
- if use mpi-threads; then |
724 |
- # MPI-THREAD requries threading. |
725 |
- c="${c} --with-thread-package=pthreads" |
726 |
- c="${c} --enable-threads=runtime" |
727 |
- else |
728 |
- if use threads ; then |
729 |
- c="${c} --with-thread-package=pthreads" |
730 |
- else |
731 |
- c="${c} --with-thread-package=none" |
732 |
- fi |
733 |
- c="${c} --enable-threads=single" |
734 |
- fi |
735 |
- |
736 |
- if ! mpi_classed; then |
737 |
- c="${c} --sysconfdir=${EPREFIX}/etc/${PN}" |
738 |
- c="${c} --docdir=${EPREFIX}/usr/share/doc/${PF}" |
739 |
- else |
740 |
- c="${c} --docdir=$(mpi_root)/usr/share/doc/${PF}" |
741 |
- fi |
742 |
- |
743 |
- export MPICHLIB_CFLAGS="${CFLAGS}" |
744 |
- export MPICHLIB_CPPFLAGS="${CPPFLAGS}" |
745 |
- export MPICHLIB_CXXFLAGS="${CXXFLAGS}" |
746 |
- export MPICHLIB_FFLAGS="${FFLAGS}" |
747 |
- export MPICHLIB_FCFLAGS="${FCFLAGS}" |
748 |
- export MPICHLIB_LDFLAGS="${LDFLAGS}" |
749 |
- unset CFLAGS CPPFLAGS CXXFLAGS FFLAGS FCFLAGS LDFLAGS |
750 |
- |
751 |
- ECONF_SOURCE=${S} econf $(mpi_econf_args) \ |
752 |
- --enable-shared \ |
753 |
- --with-hwloc-prefix="${EPREFIX}/usr" \ |
754 |
- ${c} \ |
755 |
- --with-pm=hydra \ |
756 |
- --disable-fast \ |
757 |
- --enable-versioning \ |
758 |
- $(use_enable romio) \ |
759 |
- $(use_enable cxx) \ |
760 |
- $(multilib_native_use_enable fortran fortran all) |
761 |
-} |
762 |
- |
763 |
-multilib_src_test() { |
764 |
- emake -j1 check |
765 |
-} |
766 |
- |
767 |
-multilib_src_install() { |
768 |
- default |
769 |
- |
770 |
- # fortran header cannot be wrapped (bug #540508), workaround part 1 |
771 |
- if multilib_is_native_abi && use fortran; then |
772 |
- mkdir "${T}"/fortran || die |
773 |
- mv "${ED}"/$(mpi_root)/usr/include/mpif* "${T}"/fortran || die |
774 |
- mv "${ED}"/$(mpi_root)/usr/include/*.mod "${T}"/fortran || die |
775 |
- else |
776 |
- # some fortran files get installed unconditionally |
777 |
- rm "${ED}"/$(mpi_root)/usr/include/mpif* "${ED}"usr/include/*.mod || die |
778 |
- fi |
779 |
-} |
780 |
- |
781 |
-multilib_src_install_all() { |
782 |
- # fortran header cannot be wrapped (bug #540508), workaround part 2 |
783 |
- if use fortran; then |
784 |
- mv "${T}"/fortran/* "${ED}"/$(mpi_root)/usr/include || die |
785 |
- fi |
786 |
- |
787 |
- mpi_dodir /usr/share/doc/${PF} |
788 |
- mpi_dodoc COPYRIGHT README{,.envvar} CHANGES RELEASE_NOTES |
789 |
- mpi_newdoc src/pm/hydra/README README.hydra |
790 |
- if use romio; then |
791 |
- mpi_newdoc src/mpi/romio/README README.romio |
792 |
- fi |
793 |
- |
794 |
- local d=$(echo ${ED}/$(mpi_root)/ | sed 's,///*,/,g') |
795 |
- if ! use doc; then |
796 |
- rm -rf "${d}"usr/share/doc/${PF}/www* || die |
797 |
- fi |
798 |
- |
799 |
- MPI_ESELECT_FILE="eselect.mpi.mpich" |
800 |
- mpi_imp_add_eselect |
801 |
-} |
802 |
|
803 |
diff --git a/sys-cluster/mpich/mpich-3.2.1.ebuild b/sys-cluster/mpich/mpich-3.2.1.ebuild |
804 |
deleted file mode 100644 |
805 |
index ae3166474..000000000 |
806 |
--- a/sys-cluster/mpich/mpich-3.2.1.ebuild |
807 |
+++ /dev/null |
808 |
@@ -1,140 +0,0 @@ |
809 |
-# Copyright 1999-2018 Gentoo Authors |
810 |
-# Distributed under the terms of the GNU General Public License v2 |
811 |
- |
812 |
-EAPI=6 |
813 |
- |
814 |
-FORTRAN_NEEDED=fortran |
815 |
-FORTRAN_STANDARD="77 90" |
816 |
- |
817 |
-inherit fortran-2 multilib-minimal mpi |
818 |
- |
819 |
-MY_PV=${PV/_/} |
820 |
-DESCRIPTION="A high performance and portable MPI implementation" |
821 |
-HOMEPAGE="http://www.mpich.org/" |
822 |
-SRC_URI="http://www.mpich.org/static/downloads/${PV}/${P}.tar.gz" |
823 |
- |
824 |
-SLOT="0" |
825 |
-LICENSE="mpich" |
826 |
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" |
827 |
-IUSE="+cxx doc fortran mpi-threads romio threads" |
828 |
- |
829 |
-COMMON_DEPEND=" |
830 |
- >=dev-libs/libaio-0.3.109-r5[${MULTILIB_USEDEP}] |
831 |
- >=sys-apps/hwloc-1.10.0-r2[${MULTILIB_USEDEP}] |
832 |
- romio? ( net-fs/nfs-utils ) |
833 |
- $(mpi_imp_deplist)" |
834 |
- |
835 |
-DEPEND="${COMMON_DEPEND} |
836 |
- dev-lang/perl |
837 |
- sys-devel/libtool" |
838 |
- |
839 |
-RDEPEND="${COMMON_DEPEND}" |
840 |
- |
841 |
-PATCHES=( |
842 |
- "${FILESDIR}/${P}-hwloc2.patch" |
843 |
-) |
844 |
- |
845 |
-S="${WORKDIR}"/${PN}-${MY_PV} |
846 |
- |
847 |
-MULTILIB_WRAPPED_HEADERS=( |
848 |
- /usr/include/mpicxx.h |
849 |
- /usr/include/mpi.h |
850 |
- /usr/include/opa_config.h |
851 |
-) |
852 |
- |
853 |
-src_prepare() { |
854 |
- default |
855 |
- |
856 |
- # Using MPICHLIB_LDFLAGS doesn't seem to fully work. |
857 |
- sed -i 's| *@WRAPPER_LDFLAGS@ *||' \ |
858 |
- src/packaging/pkgconfig/mpich.pc.in \ |
859 |
- src/env/*.in \ |
860 |
- || die |
861 |
-} |
862 |
- |
863 |
-multilib_src_configure() { |
864 |
- # The configure statements can be somewhat confusing, as they |
865 |
- # don't all show up in the top level configure, however, they |
866 |
- # are picked up in the children directories. Hence the separate |
867 |
- # local vars. |
868 |
- |
869 |
- local c= |
870 |
- if use mpi-threads; then |
871 |
- # MPI-THREAD requries threading. |
872 |
- c="${c} --with-thread-package=pthreads" |
873 |
- c="${c} --enable-threads=runtime" |
874 |
- else |
875 |
- if use threads ; then |
876 |
- c="${c} --with-thread-package=pthreads" |
877 |
- else |
878 |
- c="${c} --with-thread-package=none" |
879 |
- fi |
880 |
- c="${c} --enable-threads=single" |
881 |
- fi |
882 |
- |
883 |
- if ! mpi_classed; then |
884 |
- c="${c} --sysconfdir=${EPREFIX}/etc/${PN}" |
885 |
- c="${c} --docdir=${EPREFIX}/usr/share/doc/${PF}" |
886 |
- else |
887 |
- c="${c} --docdir=$(mpi_root)/usr/share/doc/${PF}" |
888 |
- fi |
889 |
- |
890 |
- export MPICHLIB_CFLAGS="${CFLAGS}" |
891 |
- export MPICHLIB_CPPFLAGS="${CPPFLAGS}" |
892 |
- export MPICHLIB_CXXFLAGS="${CXXFLAGS}" |
893 |
- export MPICHLIB_FFLAGS="${FFLAGS}" |
894 |
- export MPICHLIB_FCFLAGS="${FCFLAGS}" |
895 |
- export MPICHLIB_LDFLAGS="${LDFLAGS}" |
896 |
- unset CFLAGS CPPFLAGS CXXFLAGS FFLAGS FCFLAGS LDFLAGS |
897 |
- |
898 |
- ECONF_SOURCE=${S} econf $(mpi_econf_args) \ |
899 |
- --enable-shared \ |
900 |
- --with-hwloc-prefix="${EPREFIX}/usr" \ |
901 |
- ${c} \ |
902 |
- --with-pm=hydra \ |
903 |
- --disable-fast \ |
904 |
- --enable-versioning \ |
905 |
- $(use_enable romio) \ |
906 |
- $(use_enable cxx) \ |
907 |
- $(multilib_native_use_enable fortran fortran all) |
908 |
-} |
909 |
- |
910 |
-multilib_src_test() { |
911 |
- emake -j1 check |
912 |
-} |
913 |
- |
914 |
-multilib_src_install() { |
915 |
- default |
916 |
- |
917 |
- # fortran header cannot be wrapped (bug #540508), workaround part 1 |
918 |
- if multilib_is_native_abi && use fortran; then |
919 |
- mkdir "${T}"/fortran || die |
920 |
- mv "${ED}"/$(mpi_root)/usr/include/mpif* "${T}"/fortran || die |
921 |
- mv "${ED}"/$(mpi_root)/usr/include/*.mod "${T}"/fortran || die |
922 |
- else |
923 |
- # some fortran files get installed unconditionally |
924 |
- rm "${ED}"/$(mpi_root)/usr/include/mpif* "${ED}"usr/include/*.mod || die |
925 |
- fi |
926 |
-} |
927 |
- |
928 |
-multilib_src_install_all() { |
929 |
- # fortran header cannot be wrapped (bug #540508), workaround part 2 |
930 |
- if use fortran; then |
931 |
- mv "${T}"/fortran/* "${ED}"/$(mpi_root)/usr/include || die |
932 |
- fi |
933 |
- |
934 |
- mpi_dodir /usr/share/doc/${PF} |
935 |
- mpi_dodoc COPYRIGHT README{,.envvar} CHANGES RELEASE_NOTES |
936 |
- mpi_newdoc src/pm/hydra/README README.hydra |
937 |
- if use romio; then |
938 |
- mpi_newdoc src/mpi/romio/README README.romio |
939 |
- fi |
940 |
- |
941 |
- local d=$(echo ${ED}/$(mpi_root)/ | sed 's,///*,/,g') |
942 |
- if ! use doc; then |
943 |
- rm -rf "${d}"usr/share/doc/${PF}/www* || die |
944 |
- fi |
945 |
- |
946 |
- MPI_ESELECT_FILE="eselect.mpi.mpich" |
947 |
- mpi_imp_add_eselect |
948 |
-} |
949 |
|
950 |
diff --git a/sys-cluster/mpich2/files/0001-MPD_CONF_FILE-should-be-readable.patch b/sys-cluster/mpich2/files/0001-MPD_CONF_FILE-should-be-readable.patch |
951 |
deleted file mode 100644 |
952 |
index fa685e364..000000000 |
953 |
--- a/sys-cluster/mpich2/files/0001-MPD_CONF_FILE-should-be-readable.patch |
954 |
+++ /dev/null |
955 |
@@ -1,32 +0,0 @@ |
956 |
-From 4daa0519150f38bd322964157157fb3369ee0f38 Mon Sep 17 00:00:00 2001 |
957 |
-From: Justin Bronder <jsbronder@×××××.com> |
958 |
-Date: Wed, 16 Sep 2009 11:43:59 -0400 |
959 |
-Subject: [PATCH 1/3] MPD_CONF_FILE should be readable |
960 |
- |
961 |
-When looking for the MPD_CONF_FILE, the existance is not enough, the |
962 |
-file also needs to be readable by the current user. |
963 |
---- |
964 |
- src/pm/mpd/mpdlib.py | 4 ++-- |
965 |
- 1 files changed, 2 insertions(+), 2 deletions(-) |
966 |
- |
967 |
-diff --git a/src/pm/mpd/mpdlib.py b/src/pm/mpd/mpdlib.py |
968 |
-index 8ea8a05..31ddcb4 100644 |
969 |
---- a/src/pm/mpd/mpdlib.py |
970 |
-+++ b/src/pm/mpd/mpdlib.py |
971 |
-@@ -1359,11 +1359,11 @@ class MPDParmDB(dict): |
972 |
- if os.environ.has_key(k): |
973 |
- self[('env',k)] = os.environ[k] |
974 |
- def get_parms_from_rcfile(self,parmsToOverride,errIfMissingFile=0): |
975 |
-- if os.environ.has_key('MPD_CONF_FILE'): |
976 |
-+ if os.environ.has_key('MPD_CONF_FILE') and os.access(os.environ['MPD_CONF_FILE'], os.R_OK): |
977 |
- parmsRCFilename = os.environ['MPD_CONF_FILE'] |
978 |
- elif hasattr(os,'getuid') and os.getuid() == 0: # if ROOT |
979 |
- parmsRCFilename = os.path.abspath('/etc/mpd.conf') |
980 |
-- elif os.environ.has_key('HOME'): |
981 |
-+ elif os.environ.has_key('HOME') and os.access(os.path.join(os.environ['HOME'], '.mpd.conf'), os.R_OK): |
982 |
- parmsRCFilename = os.path.join(os.environ['HOME'],'.mpd.conf') |
983 |
- elif os.environ.has_key('HOMEPATH'): # e.g. win32 |
984 |
- parmsRCFilename = os.path.join(os.environ['HOMEPATH'],'.mpd.conf') |
985 |
--- |
986 |
-1.6.3.3 |
987 |
- |
988 |
|
989 |
diff --git a/sys-cluster/mpich2/files/0002-mpd_conf_file-search-order.patch b/sys-cluster/mpich2/files/0002-mpd_conf_file-search-order.patch |
990 |
deleted file mode 100644 |
991 |
index 2bb59e7c2..000000000 |
992 |
--- a/sys-cluster/mpich2/files/0002-mpd_conf_file-search-order.patch |
993 |
+++ /dev/null |
994 |
@@ -1,98 +0,0 @@ |
995 |
-From c5c6b5677854d2e835ed7d8d0497ab4f475c63fc Mon Sep 17 00:00:00 2001 |
996 |
-From: Justin Bronder <jsbronder@×××××.com> |
997 |
-Date: Wed, 16 Sep 2009 11:50:20 -0400 |
998 |
-Subject: [PATCH 2/3] mpd_conf_file search order. |
999 |
- |
1000 |
-Make sure the search order for mpd.conf is the following: |
1001 |
- - MPD_CONF_FILE set in environment |
1002 |
- - .mpd.conf in the user's home directory |
1003 |
- - The system wide default in SYSCONFDIR/mpd.conf |
1004 |
---- |
1005 |
- src/pm/mpd/Makefile.in | 9 ++++++--- |
1006 |
- src/pm/mpd/mpdroot.c | 27 +++++++++++++++++++++++++-- |
1007 |
- 2 files changed, 31 insertions(+), 5 deletions(-) |
1008 |
- |
1009 |
-diff --git a/src/pm/mpd/Makefile.in b/src/pm/mpd/Makefile.in |
1010 |
-index e1752f8..4ef65fc 100644 |
1011 |
---- a/src/pm/mpd/Makefile.in |
1012 |
-+++ b/src/pm/mpd/Makefile.in |
1013 |
-@@ -74,7 +74,7 @@ mpdroot: ${mpdroot_OBJECTS} |
1014 |
- $(C_LINK) -o mpdroot ${mpdroot_OBJECTS} $(LIBS) |
1015 |
- |
1016 |
- mpdroot.o: ${srcdir}/mpdroot.c ${srcdir}/mpdroot.h mpdconf.h |
1017 |
-- ${C_COMPILE} -c $< |
1018 |
-+ ${C_COMPILE} -DSYSCONFDIR=\"@sysconfdir@\" -c $< |
1019 |
- |
1020 |
- # The following lines provide the right libraries for all example programs |
1021 |
- .c: |
1022 |
-@@ -128,7 +128,10 @@ install: all |
1023 |
- @echo "copying python files/links into " $(DESTDIR)${bindir} |
1024 |
- -@for cmd in ${PYTHON_SOURCE} ; do \ |
1025 |
- if [ ! -s $(srcdir)/$$cmd.py ] ; then continue ; fi ; \ |
1026 |
-- sed -e 's#/usr/bin/env python.*#/usr/bin/env ${PYTHON}#' ${srcdir}/$$cmd.py > $(DESTDIR)${bindir}/temp$$cmd.py ; \ |
1027 |
-+ sed \ |
1028 |
-+ -e 's#/usr/bin/env python.*#/usr/bin/env ${PYTHON}#' \ |
1029 |
-+ -e 's,/etc/mpd.conf,@sysconfdir@/mpd.conf,g' \ |
1030 |
-+ ${srcdir}/$$cmd.py > $(DESTDIR)${bindir}/temp$$cmd.py ; \ |
1031 |
- ${INSTALL} -m 755 $(DESTDIR)${bindir}/temp$$cmd.py $(DESTDIR)${bindir}/$$cmd.py; \ |
1032 |
- ( rm -f $(DESTDIR)${bindir}/temp$$cmd.py >/dev/null 2>&1 || exit 0 ) ; \ |
1033 |
- done |
1034 |
-@@ -210,7 +213,7 @@ mpich2-mpdroot: mpich2-mpdroot.o |
1035 |
- |
1036 |
- mpich2-mpdroot.o: ${srcdir}/mpdroot.c ${srcdir}/mpdroot.h mpdconf.h |
1037 |
- ${INSTALL} -m 644 ${srcdir}/mpdroot.c mpich2-mpdroot.c |
1038 |
-- ${C_COMPILE} -c mpich2-mpdroot.c |
1039 |
-+ ${C_COMPILE} -DSYSCONFDIR=\"@sysconfdir@\" -c mpich2-mpdroot.c |
1040 |
- rm -f mpich2-mpdroot.c |
1041 |
- |
1042 |
- # A special alternate installation target when using multiple process managers |
1043 |
-diff --git a/src/pm/mpd/mpdroot.c b/src/pm/mpd/mpdroot.c |
1044 |
-index 348c7b6..1a4f2a5 100644 |
1045 |
---- a/src/pm/mpd/mpdroot.c |
1046 |
-+++ b/src/pm/mpd/mpdroot.c |
1047 |
-@@ -19,6 +19,7 @@ int main(int argc, char *argv[]) |
1048 |
- struct passwd *pwent; |
1049 |
- char input_line[NAME_LEN+1], secretword[NAME_LEN+1]; |
1050 |
- FILE *conf_file; |
1051 |
-+ char *mpdconf_path = NULL; |
1052 |
- |
1053 |
- if ((pwent = getpwuid(getuid())) == NULL) /* for real id */ |
1054 |
- { |
1055 |
-@@ -26,10 +27,32 @@ int main(int argc, char *argv[]) |
1056 |
- exit(-1); |
1057 |
- } |
1058 |
- |
1059 |
-- conf_file = fopen("/etc/mpd.conf","r"); |
1060 |
-+ /* |
1061 |
-+ * We look for a readable mpd.conf in the following order. |
1062 |
-+ * - MPD_CONF_FILE set in environment |
1063 |
-+ * - .mpd.conf in the user's home directory |
1064 |
-+ * - The system wide default in SYSCONFDIR/mpd.conf |
1065 |
-+ */ |
1066 |
-+ mpdconf_path = getenv("MPD_CONF_FILE"); |
1067 |
-+ if ( ! (mpdconf_path && access( mpdconf_path, R_OK ) == 0) ){ |
1068 |
-+ /* By far, the largest we'll need */ |
1069 |
-+ size_t mpdconf_path_len = strlen(pwent->pw_dir) \ |
1070 |
-+ + strlen(SYSCONFDIR) + strlen("/.mpd.conf"); |
1071 |
-+ |
1072 |
-+ mpdconf_path = (char*) malloc( sizeof(char) * mpdconf_path_len ); |
1073 |
-+ if ( ! mpdconf_path ){ |
1074 |
-+ fprintf( stderr, "%s: Failed to allocate a buffer for path to mpd.conf\n", argv[0]); |
1075 |
-+ exit(-1); |
1076 |
-+ } |
1077 |
-+ snprintf( mpdconf_path, mpdconf_path_len-1, "%s/.mpd.conf", pwent->pw_dir ); |
1078 |
-+ if ( access( mpdconf_path, R_OK ) != 0 ) |
1079 |
-+ snprintf( mpdconf_path, mpdconf_path_len-1, "%s/mpd.conf", SYSCONFDIR ); |
1080 |
-+ } |
1081 |
-+ conf_file = fopen( mpdconf_path, "r"); |
1082 |
-+ |
1083 |
- if (conf_file == NULL) |
1084 |
- { |
1085 |
-- printf("%s: open failed for root's mpd conf file",argv[0]); |
1086 |
-+ printf("%s: open failed for root's mpd conf file\n",argv[0]); |
1087 |
- exit(-1); |
1088 |
- } |
1089 |
- secretword[0] = '\0'; |
1090 |
--- |
1091 |
-1.6.3.3 |
1092 |
- |
1093 |
|
1094 |
diff --git a/sys-cluster/mpich2/files/0003-Fix-pkgconfig-for-mpich2-ch3-v1.2.1.patch b/sys-cluster/mpich2/files/0003-Fix-pkgconfig-for-mpich2-ch3-v1.2.1.patch |
1095 |
deleted file mode 100644 |
1096 |
index 266990c0b..000000000 |
1097 |
--- a/sys-cluster/mpich2/files/0003-Fix-pkgconfig-for-mpich2-ch3-v1.2.1.patch |
1098 |
+++ /dev/null |
1099 |
@@ -1,36 +0,0 @@ |
1100 |
-From 6572e098d5463bdcdcb9563ee9a736efed4a01c9 Mon Sep 17 00:00:00 2001 |
1101 |
-From: Justin Bronder <jsbronder@×××××.com> |
1102 |
-Date: Tue, 24 Nov 2009 10:27:51 -0500 |
1103 |
-Subject: [PATCH] Fix pkgconfig for mpich2-ch3 v1.2.1 |
1104 |
- |
1105 |
-Variables were undefined, see http://bugs.gentoo.org/257821 |
1106 |
- |
1107 |
-$ pkg-config --list-all |
1108 |
-[lots of output, then] |
1109 |
-Variable 'exec_prefix' not defined in '/usr/lib/pkgconfig/mpich2-ch3.pc' |
1110 |
---- |
1111 |
- src/packaging/pkgconfig/mpich2-ch3.pc.in | 8 ++++++-- |
1112 |
- 1 files changed, 6 insertions(+), 2 deletions(-) |
1113 |
- |
1114 |
-diff --git a/src/packaging/pkgconfig/mpich2-ch3.pc.in b/src/packaging/pkgconfig/mpich2-ch3.pc.in |
1115 |
-index b061464..275b535 100644 |
1116 |
---- a/src/packaging/pkgconfig/mpich2-ch3.pc.in |
1117 |
-+++ b/src/packaging/pkgconfig/mpich2-ch3.pc.in |
1118 |
-@@ -1,8 +1,12 @@ |
1119 |
- # this gives access to the mpich2 header files |
1120 |
-+prefix=@prefix@ |
1121 |
-+exec_prefix=@exec_prefix@ |
1122 |
-+libdir=@libdir@ |
1123 |
-+includedir=@includedir@ |
1124 |
- |
1125 |
- Name: mpich2 |
1126 |
- Description: MPICH2 is an implementation of the Message-Passing Interface (MPI). The goals of MPICH2 are to provide an MPI implementation for important platforms, including clusters, SMPs, and massively parallel processors. It also provides a vehicle for MPI implementation research and for developing new and better parallel programming environments. |
1127 |
- Version: @MPICH2_VERSION@ |
1128 |
- Requires: |
1129 |
--Libs: -L@libdir@ -lmpich -lmpichcxx -lopa @LIBS@ |
1130 |
--Cflags: @CFLAGS@ -I@includedir@ -DMPICH_IGNORE_CXX_SEEK |
1131 |
-+Libs: -L${libdir} -lmpich -lmpichcxx -lopa @LIBS@ |
1132 |
-+Cflags: @CFLAGS@ -I${includedir} -DMPICH_IGNORE_CXX_SEEK |
1133 |
--- |
1134 |
-1.6.3.3 |
1135 |
- |
1136 |
|
1137 |
diff --git a/sys-cluster/mpich2/files/0003-Fix-pkgconfig-for-mpich2-ch3.patch b/sys-cluster/mpich2/files/0003-Fix-pkgconfig-for-mpich2-ch3.patch |
1138 |
deleted file mode 100644 |
1139 |
index 04be31337..000000000 |
1140 |
--- a/sys-cluster/mpich2/files/0003-Fix-pkgconfig-for-mpich2-ch3.patch |
1141 |
+++ /dev/null |
1142 |
@@ -1,36 +0,0 @@ |
1143 |
-From 06eaaf72d12ca70275fd4f403af14bcb2d609718 Mon Sep 17 00:00:00 2001 |
1144 |
-From: Justin Bronder <jsbronder@×××××.com> |
1145 |
-Date: Wed, 16 Sep 2009 11:59:57 -0400 |
1146 |
-Subject: [PATCH 3/3] Fix pkgconfig for mpich2-ch3 |
1147 |
- |
1148 |
-Variables were undefined, see http://bugs.gentoo.org/257821 |
1149 |
- |
1150 |
-$ pkg-config --list-all |
1151 |
-[lots of output, then] |
1152 |
-Variable 'exec_prefix' not defined in '/usr/lib/pkgconfig/mpich2-ch3.pc' |
1153 |
---- |
1154 |
- src/packaging/pkgconfig/mpich2-ch3.pc.in | 8 ++++++-- |
1155 |
- 1 files changed, 6 insertions(+), 2 deletions(-) |
1156 |
- |
1157 |
-diff --git a/src/packaging/pkgconfig/mpich2-ch3.pc.in b/src/packaging/pkgconfig/mpich2-ch3.pc.in |
1158 |
-index df10b7f..8621ef5 100644 |
1159 |
---- a/src/packaging/pkgconfig/mpich2-ch3.pc.in |
1160 |
-+++ b/src/packaging/pkgconfig/mpich2-ch3.pc.in |
1161 |
-@@ -1,8 +1,12 @@ |
1162 |
- # this gives access to the mpich2 header files |
1163 |
-+prefix=@prefix@ |
1164 |
-+exec_prefix=@exec_prefix@ |
1165 |
-+libdir=@libdir@ |
1166 |
-+includedir=@includedir@ |
1167 |
- |
1168 |
- Name: mpich2 |
1169 |
- Description: MPICH2 is an implementation of the Message-Passing Interface (MPI). The goals of MPICH2 are to provide an MPI implementation for important platforms, including clusters, SMPs, and massively parallel processors. It also provides a vehicle for MPI implementation research and for developing new and better parallel programming environments. |
1170 |
- Version: @VERSION@ |
1171 |
- Requires: |
1172 |
--Libs: -L@libdir@ -lmpich -lmpichcxx @LIBS@ |
1173 |
--Cflags: @CFLAGS@ -I@includedir@ -DMPICH_IGNORE_CXX_SEEK |
1174 |
-+Libs: -L${libdir} -lmpich -lmpichcxx @LIBS@ |
1175 |
-+Cflags: @CFLAGS@ -I${includedir} -DMPICH_IGNORE_CXX_SEEK |
1176 |
--- |
1177 |
-1.6.3.3 |
1178 |
- |
1179 |
|
1180 |
diff --git a/sys-cluster/mpich2/files/eselect.mpi.mpich2 b/sys-cluster/mpich2/files/eselect.mpi.mpich2 |
1181 |
deleted file mode 100644 |
1182 |
index 703d71176..000000000 |
1183 |
--- a/sys-cluster/mpich2/files/eselect.mpi.mpich2 |
1184 |
+++ /dev/null |
1185 |
@@ -1,8 +0,0 @@ |
1186 |
-MPI_CC=@ROOT@usr/bin/mpicc |
1187 |
-MPI_CXX=@ROOT@usr/bin/mpicxx |
1188 |
-MPI_F77=@ROOT@usr/bin/mpif77 |
1189 |
-MPI_FC=@ROOT@usr/bin/mpif90 |
1190 |
-CLASS_BASE_MPI_IMP=@BASE_IMP@ |
1191 |
-PATH=@ROOT@usr/bin |
1192 |
-MANPATH=@ROOT@usr/share/man |
1193 |
-LD_LIBRARY_PATH=@ROOT@usr/@LIBDIR@ |
1194 |
|
1195 |
diff --git a/sys-cluster/mpich2/files/fix-pkg-config-files.patch b/sys-cluster/mpich2/files/fix-pkg-config-files.patch |
1196 |
deleted file mode 100644 |
1197 |
index d9c311e31..000000000 |
1198 |
--- a/sys-cluster/mpich2/files/fix-pkg-config-files.patch |
1199 |
+++ /dev/null |
1200 |
@@ -1,119 +0,0 @@ |
1201 |
-From cba731049a24735beb660dc236f61070aa6e387a Mon Sep 17 00:00:00 2001 |
1202 |
-From: Justin Bronder <jsbronder@×××××.com> |
1203 |
-Date: Thu, 5 Jan 2012 22:20:31 -0500 |
1204 |
-Subject: [PATCH] fix pkg config files |
1205 |
- |
1206 |
-Conditionals are not supported. |
1207 |
-https://trac.mcs.anl.gov/projects/mpich2/ticket/1044 |
1208 |
---- |
1209 |
- configure.in | 6 ++++++ |
1210 |
- src/packaging/pkgconfig/mpich2-c.pc.in | 8 +------- |
1211 |
- src/packaging/pkgconfig/mpich2-cxx.pc.in | 8 +------- |
1212 |
- src/packaging/pkgconfig/mpich2-f77.pc.in | 8 +------- |
1213 |
- src/packaging/pkgconfig/mpich2-f90.pc.in | 8 +------- |
1214 |
- 5 files changed, 10 insertions(+), 28 deletions(-) |
1215 |
- |
1216 |
-diff --git a/configure.in b/configure.in |
1217 |
-index 294dc85..44b1010 100644 |
1218 |
---- a/configure.in |
1219 |
-+++ b/configure.in |
1220 |
-@@ -5332,6 +5332,12 @@ AC_SUBST(MPICH_TIMER_KIND) |
1221 |
- # Setup other replaceable values |
1222 |
- AC_SUBST(MPILIBNAME) |
1223 |
- AC_SUBST(PMPILIBNAME) |
1224 |
-+PKGCONFIG_PMPILIB="" |
1225 |
-+if test "$NEEDSPLIB" = yes -a test -n "${PMPILIBNAME}" ; then |
1226 |
-+ PKGCONFIG_PMPILIB="-l${PMPILIBNAME}" |
1227 |
-+fi |
1228 |
-+AC_SUBST(PKGCONFIG_PMPILIB) |
1229 |
-+ |
1230 |
- # Note that aint_size must be used instead of void_p where the desired check |
1231 |
- # is on the size of MPI_Aint |
1232 |
- aint_size=$ac_cv_sizeof_void_p |
1233 |
-diff --git a/src/packaging/pkgconfig/mpich2-c.pc.in b/src/packaging/pkgconfig/mpich2-c.pc.in |
1234 |
-index 394630b..e0ab3fa 100644 |
1235 |
---- a/src/packaging/pkgconfig/mpich2-c.pc.in |
1236 |
-+++ b/src/packaging/pkgconfig/mpich2-c.pc.in |
1237 |
-@@ -4,15 +4,9 @@ exec_prefix=@exec_prefix@ |
1238 |
- libdir=@libdir@ |
1239 |
- includedir=@includedir@ |
1240 |
- |
1241 |
--if test "@NEEDSPLIB@" = "yes" ; then |
1242 |
-- plib=@PMPILIBNAME@ |
1243 |
--else |
1244 |
-- plib= |
1245 |
--fi |
1246 |
-- |
1247 |
- Name: mpich2 |
1248 |
- Description: MPICH2 is an implementation of the Message-Passing Interface (MPI). The goals of MPICH2 are to provide an MPI implementation for important platforms, including clusters, SMPs, and massively parallel processors. It also provides a vehicle for MPI implementation research and for developing new and better parallel programming environments. |
1249 |
- Version: @MPICH2_VERSION@ |
1250 |
- Requires: |
1251 |
--Libs: @WRAPPER_LDFLAGS@ -L${libdir} -l${plib} -l@MPILIBNAME@ @WRAPPER_LIBS@ |
1252 |
-+Libs: @WRAPPER_LDFLAGS@ -L${libdir} @PKGCONFIG_PMPILIB@ -l@MPILIBNAME@ @WRAPPER_LIBS@ |
1253 |
- Cflags: @WRAPPER_CPPFLAGS@ @WRAPPER_CFLAGS@ -I${includedir} |
1254 |
-diff --git a/src/packaging/pkgconfig/mpich2-cxx.pc.in b/src/packaging/pkgconfig/mpich2-cxx.pc.in |
1255 |
-index 936ade6..d82e184 100644 |
1256 |
---- a/src/packaging/pkgconfig/mpich2-cxx.pc.in |
1257 |
-+++ b/src/packaging/pkgconfig/mpich2-cxx.pc.in |
1258 |
-@@ -4,15 +4,9 @@ exec_prefix=@exec_prefix@ |
1259 |
- libdir=@libdir@ |
1260 |
- includedir=@includedir@ |
1261 |
- |
1262 |
--if test "@NEEDSPLIB@" = "yes" ; then |
1263 |
-- plib=@PMPILIBNAME@ |
1264 |
--else |
1265 |
-- plib= |
1266 |
--fi |
1267 |
-- |
1268 |
- Name: mpich2 |
1269 |
- Description: MPICH2 is an implementation of the Message-Passing Interface (MPI). The goals of MPICH2 are to provide an MPI implementation for important platforms, including clusters, SMPs, and massively parallel processors. It also provides a vehicle for MPI implementation research and for developing new and better parallel programming environments. |
1270 |
- Version: @MPICH2_VERSION@ |
1271 |
- Requires: |
1272 |
--Libs: @WRAPPER_LDFLAGS@ -L${libdir} -l${plib} -l@MPILIBNAME@ @WRAPPER_LIBS@ |
1273 |
-+Libs: @WRAPPER_LDFLAGS@ -L${libdir} @PKGCONFIG_PMPILIB@ -l@MPILIBNAME@ @WRAPPER_LIBS@ |
1274 |
- Cxxflags: @WRAPPER_CPPFLAGS@ @WRAPPER_CXXFLAGS@ -I${includedir} |
1275 |
-diff --git a/src/packaging/pkgconfig/mpich2-f77.pc.in b/src/packaging/pkgconfig/mpich2-f77.pc.in |
1276 |
-index 291462e..193c2ab 100644 |
1277 |
---- a/src/packaging/pkgconfig/mpich2-f77.pc.in |
1278 |
-+++ b/src/packaging/pkgconfig/mpich2-f77.pc.in |
1279 |
-@@ -4,15 +4,9 @@ exec_prefix=@exec_prefix@ |
1280 |
- libdir=@libdir@ |
1281 |
- includedir=@includedir@ |
1282 |
- |
1283 |
--if test "@NEEDSPLIB@" = "yes" ; then |
1284 |
-- plib=@PMPILIBNAME@ |
1285 |
--else |
1286 |
-- plib= |
1287 |
--fi |
1288 |
-- |
1289 |
- Name: mpich2 |
1290 |
- Description: MPICH2 is an implementation of the Message-Passing Interface (MPI). The goals of MPICH2 are to provide an MPI implementation for important platforms, including clusters, SMPs, and massively parallel processors. It also provides a vehicle for MPI implementation research and for developing new and better parallel programming environments. |
1291 |
- Version: @MPICH2_VERSION@ |
1292 |
- Requires: |
1293 |
--Libs: @WRAPPER_LDFLAGS@ -L${libdir} -l${plib} -l@MPILIBNAME@ @WRAPPER_LIBS@ |
1294 |
-+Libs: @WRAPPER_LDFLAGS@ -L${libdir} @PKGCONFIG_PMPILIB@ -l@MPILIBNAME@ @WRAPPER_LIBS@ |
1295 |
- Fflags: @WRAPPER_FFLAGS@ -I${includedir} |
1296 |
-diff --git a/src/packaging/pkgconfig/mpich2-f90.pc.in b/src/packaging/pkgconfig/mpich2-f90.pc.in |
1297 |
-index ca15e18..700976f 100644 |
1298 |
---- a/src/packaging/pkgconfig/mpich2-f90.pc.in |
1299 |
-+++ b/src/packaging/pkgconfig/mpich2-f90.pc.in |
1300 |
-@@ -4,15 +4,9 @@ exec_prefix=@exec_prefix@ |
1301 |
- libdir=@libdir@ |
1302 |
- includedir=@includedir@ |
1303 |
- |
1304 |
--if test "@NEEDSPLIB@" = "yes" ; then |
1305 |
-- plib=@PMPILIBNAME@ |
1306 |
--else |
1307 |
-- plib= |
1308 |
--fi |
1309 |
-- |
1310 |
- Name: mpich2 |
1311 |
- Description: MPICH2 is an implementation of the Message-Passing Interface (MPI). The goals of MPICH2 are to provide an MPI implementation for important platforms, including clusters, SMPs, and massively parallel processors. It also provides a vehicle for MPI implementation research and for developing new and better parallel programming environments. |
1312 |
- Version: @MPICH2_VERSION@ |
1313 |
- Requires: |
1314 |
--Libs: @WRAPPER_LDFLAGS@ -L${libdir} -l${plib} -l@MPILIBNAME@ @WRAPPER_LIBS@ |
1315 |
-+Libs: @WRAPPER_LDFLAGS@ -L${libdir} @PKGCONFIG_PMPILIB@ -l@MPILIBNAME@ @WRAPPER_LIBS@ |
1316 |
- Fcflags: @WRAPPER_FCFLAGS@ -I${includedir} |
1317 |
--- |
1318 |
-1.7.3.4 |
1319 |
- |
1320 |
|
1321 |
diff --git a/sys-cluster/mpich2/files/mpd.conf b/sys-cluster/mpich2/files/mpd.conf |
1322 |
deleted file mode 100644 |
1323 |
index 07dd98250..000000000 |
1324 |
--- a/sys-cluster/mpich2/files/mpd.conf |
1325 |
+++ /dev/null |
1326 |
@@ -1,2 +0,0 @@ |
1327 |
-secretword=test69hike |
1328 |
-MPD_SECRETWORD=test69hike |
1329 |
|
1330 |
diff --git a/sys-cluster/mpich2/files/mpich2-1.0.8-gforker-install-alt-fix.patch b/sys-cluster/mpich2/files/mpich2-1.0.8-gforker-install-alt-fix.patch |
1331 |
deleted file mode 100644 |
1332 |
index 00774049f..000000000 |
1333 |
--- a/sys-cluster/mpich2/files/mpich2-1.0.8-gforker-install-alt-fix.patch |
1334 |
+++ /dev/null |
1335 |
@@ -1,12 +0,0 @@ |
1336 |
---- mpich2-1.0.8/src/pm/gforker/Makefile.in-orig 2008-11-01 13:18:37.685990975 -0400 |
1337 |
-+++ mpich2-1.0.8/src/pm/gforker/Makefile.in 2008-11-01 13:19:03.584804978 -0400 |
1338 |
-@@ -176,6 +176,9 @@ |
1339 |
- |
1340 |
- # A special alternate installation target when using multiple process managers |
1341 |
- install-alt: mpiexec |
1342 |
-+ if [ ! -d ${DESTDIR}${exec_prefix} ] ; then $(MKDIR_P) ${DESTDIR}${exec_prefix} ; fi |
1343 |
-+ if [ ! -d ${DESTDIR}${prefix} ] ; then $(MKDIR_P) ${DESTDIR}${prefix} ; fi |
1344 |
-+ if [ ! -d ${DESTDIR}${bindir} ] ; then $(MKDIR_P) ${DESTDIR}${bindir} ; fi |
1345 |
- $(INSTALL_PROGRAM) $(INSTALL_STRIP_FLAG) mpiexec $(DESTDIR)${bindir}/mpiexec.gforker |
1346 |
- |
1347 |
- |
1348 |
|
1349 |
diff --git a/sys-cluster/mpich2/files/mpich2-1.0.8-mpdconf-env.patch b/sys-cluster/mpich2/files/mpich2-1.0.8-mpdconf-env.patch |
1350 |
deleted file mode 100644 |
1351 |
index af3bbb239..000000000 |
1352 |
--- a/sys-cluster/mpich2/files/mpich2-1.0.8-mpdconf-env.patch |
1353 |
+++ /dev/null |
1354 |
@@ -1,112 +0,0 @@ |
1355 |
-diff -urN a/mpich2-1.0.8/src/pm/mpd/Makefile.in b/mpich2-1.0.8/src/pm/mpd/Makefile.in |
1356 |
---- a/mpich2-1.0.8/src/pm/mpd/Makefile.in 2008-09-17 16:40:53.000000000 -0400 |
1357 |
-+++ b/mpich2-1.0.8/src/pm/mpd/Makefile.in 2009-04-01 16:38:02.236018295 -0400 |
1358 |
-@@ -74,7 +74,7 @@ |
1359 |
- $(C_LINK) -o mpdroot ${mpdroot_OBJECTS} $(LIBS) |
1360 |
- |
1361 |
- mpdroot.o: ${srcdir}/mpdroot.c ${srcdir}/mpdroot.h mpdconf.h |
1362 |
-- ${C_COMPILE} -c $< |
1363 |
-+ ${C_COMPILE} -DSYSCONFDIR=\"@sysconfdir@\" -c $< |
1364 |
- |
1365 |
- # The following lines provide the right libraries for all example programs |
1366 |
- .c: |
1367 |
-@@ -128,8 +128,11 @@ |
1368 |
- @echo "copying python files/links into " $(DESTDIR)${bindir} |
1369 |
- -@for cmd in ${PYTHON_SOURCE} ; do \ |
1370 |
- if [ ! -s $(srcdir)/$$cmd.py ] ; then continue ; fi ; \ |
1371 |
-- sed -e 's#/usr/bin/env python.*#/usr/bin/env ${PYTHON}#' ${srcdir}/$$cmd.py > $(DESTDIR)${bindir}/temp$$cmd.py ; \ |
1372 |
-- ${INSTALL} -m 755 $(DESTDIR)${bindir}/temp$$cmd.py $(DESTDIR)${bindir}/$$cmd.py; \ |
1373 |
-+ sed \ |
1374 |
-+ -e 's#/usr/bin/env python.*#/usr/bin/env ${PYTHON}#' \ |
1375 |
-+ -e 's,/etc/mpd.conf,@sysconfdir@/mpd.conf,g' \ |
1376 |
-+ ${srcdir}/$$cmd.py > $(DESTDIR)${bindir}/temp$$cmd.py ; \ |
1377 |
-+ ${INSTALL} -m 755 $(DESTDIR)${bindir}/temp$$cmd.py $(DESTDIR)${bindir}/$$cmd.py; \ |
1378 |
- ( rm -f $(DESTDIR)${bindir}/temp$$cmd.py >/dev/null 2>&1 || exit 0 ) ; \ |
1379 |
- done |
1380 |
- -@cd $(DESTDIR)${bindir} && rm -f mpd |
1381 |
-@@ -210,7 +213,7 @@ |
1382 |
- |
1383 |
- mpich2-mpdroot.o: ${srcdir}/mpdroot.c ${srcdir}/mpdroot.h mpdconf.h |
1384 |
- ${INSTALL} -m 644 ${srcdir}/mpdroot.c mpich2-mpdroot.c |
1385 |
-- ${C_COMPILE} -c mpich2-mpdroot.c |
1386 |
-+ ${C_COMPILE} -DSYSCONFDIR=\"@sysconfdir@\" -c mpich2-mpdroot.c |
1387 |
- rm -f mpich2-mpdroot.c |
1388 |
- |
1389 |
- # A special alternate installation target when using multiple process managers |
1390 |
-@@ -226,8 +229,11 @@ |
1391 |
- fi |
1392 |
- for cmd in ${PYTHON_SOURCE} ; do \ |
1393 |
- if [ ! -s $(srcdir)/$$cmd.py ] ; then continue ; fi ; \ |
1394 |
-- sed -e 's#/usr/bin/env python.*#/usr/bin/env ${PYTHON}#' ${srcdir}/$$cmd.py > $(DESTDIR)${bindir}/temp$$cmd.py ; \ |
1395 |
-- ${INSTALL} -m 755 $(DESTDIR)${bindir}/temp$$cmd.py $(DESTDIR)${bindir}/$$cmd.py; \ |
1396 |
-+ sed \ |
1397 |
-+ -e 's#/usr/bin/env python.*#/usr/bin/env ${PYTHON}#' \ |
1398 |
-+ -e 's,/etc/mpd.conf,@sysconfdir@/mpd.conf,g' \ |
1399 |
-+ ${srcdir}/$$cmd.py > $(DESTDIR)${bindir}/temp$$cmd.py ; \ |
1400 |
-+ ${INSTALL} -m 755 $(DESTDIR)${bindir}/temp$$cmd.py $(DESTDIR)${bindir}/$$cmd.py; \ |
1401 |
- ( rm -f $(DESTDIR)${bindir}/temp$$cmd.py >/dev/null 2>&1 || exit 0 ) ; \ |
1402 |
- done |
1403 |
- cd $(DESTDIR)${bindir} && rm -f mpd |
1404 |
-diff -urN a/mpich2-1.0.8/src/pm/mpd/mpdlib.py b/mpich2-1.0.8/src/pm/mpd/mpdlib.py |
1405 |
---- a/mpich2-1.0.8/src/pm/mpd/mpdlib.py 2007-11-08 18:47:44.000000000 -0500 |
1406 |
-+++ b/mpich2-1.0.8/src/pm/mpd/mpdlib.py 2009-04-01 16:35:08.899627072 -0400 |
1407 |
-@@ -1341,11 +1341,11 @@ |
1408 |
- if os.environ.has_key(k): |
1409 |
- self[('env',k)] = os.environ[k] |
1410 |
- def get_parms_from_rcfile(self,parmsToOverride,errIfMissingFile=0): |
1411 |
-- if os.environ.has_key('MPD_CONF_FILE'): |
1412 |
-+ if os.environ.has_key('MPD_CONF_FILE') and os.access(os.environ['MPD_CONF_FILE'], os.R_OK): |
1413 |
- parmsRCFilename = os.environ['MPD_CONF_FILE'] |
1414 |
- elif hasattr(os,'getuid') and os.getuid() == 0: # if ROOT |
1415 |
- parmsRCFilename = os.path.abspath('/etc/mpd.conf') |
1416 |
-- elif os.environ.has_key('HOME'): |
1417 |
-+ elif os.environ.has_key('HOME') and os.access(os.path.join(os.environ['HOME'],'.mpd.conf'), os.R_OK): |
1418 |
- parmsRCFilename = os.path.join(os.environ['HOME'],'.mpd.conf') |
1419 |
- elif os.environ.has_key('HOMEPATH'): # e.g. win32 |
1420 |
- parmsRCFilename = os.path.join(os.environ['HOMEPATH'],'.mpd.conf') |
1421 |
-diff -urN a/mpich2-1.0.8/src/pm/mpd/mpdroot.c b/mpich2-1.0.8/src/pm/mpd/mpdroot.c |
1422 |
---- a/mpich2-1.0.8/src/pm/mpd/mpdroot.c 2007-11-02 18:50:19.000000000 -0400 |
1423 |
-+++ b/mpich2-1.0.8/src/pm/mpd/mpdroot.c 2009-04-01 16:35:08.899627072 -0400 |
1424 |
-@@ -19,6 +19,7 @@ |
1425 |
- struct passwd *pwent; |
1426 |
- char input_line[NAME_LEN+1], secretword[NAME_LEN+1]; |
1427 |
- FILE *conf_file; |
1428 |
-+ char *mpdconf_path = NULL; |
1429 |
- |
1430 |
- if ((pwent = getpwuid(getuid())) == NULL) /* for real id */ |
1431 |
- { |
1432 |
-@@ -26,10 +27,32 @@ |
1433 |
- exit(-1); |
1434 |
- } |
1435 |
- |
1436 |
-- conf_file = fopen("/etc/mpd.conf","r"); |
1437 |
-+ /* |
1438 |
-+ * We look for a readable mpd.conf in the following order. |
1439 |
-+ * - MPD_CONF_FILE set in environment |
1440 |
-+ * - .mpd.conf in the user's home directory |
1441 |
-+ * - The system wide default in SYSCONFDIR/mpd.conf |
1442 |
-+ */ |
1443 |
-+ mpdconf_path = getenv("MPD_CONF_FILE"); |
1444 |
-+ if ( ! (mpdconf_path && access( mpdconf_path, R_OK ) == 0) ){ |
1445 |
-+ /* By far, the largest we'll need */ |
1446 |
-+ size_t mpdconf_path_len = strlen(pwent->pw_dir) \ |
1447 |
-+ + strlen(SYSCONFDIR) + strlen("/.mpd.conf"); |
1448 |
-+ |
1449 |
-+ mpdconf_path = (char*) malloc( sizeof(char) * mpdconf_path_len ); |
1450 |
-+ if ( ! mpdconf_path ){ |
1451 |
-+ fprintf( stderr, "%s: Failed to allocate a buffer for path to mpd.conf\n", argv[0]); |
1452 |
-+ exit(-1); |
1453 |
-+ } |
1454 |
-+ snprintf( mpdconf_path, mpdconf_path_len-1, "%s/.mpd.conf", pwent->pw_dir ); |
1455 |
-+ if ( access( mpdconf_path, R_OK ) != 0 ) |
1456 |
-+ snprintf( mpdconf_path, mpdconf_path_len-1, "%s/mpd.conf", SYSCONFDIR ); |
1457 |
-+ } |
1458 |
-+ conf_file = fopen( mpdconf_path, "r"); |
1459 |
-+ |
1460 |
- if (conf_file == NULL) |
1461 |
- { |
1462 |
-- printf("%s: open failed for root's mpd conf file",argv[0]); |
1463 |
-+ printf("%s: open failed for root's mpd conf file\n",argv[0]); |
1464 |
- exit(-1); |
1465 |
- } |
1466 |
- secretword[0] = '\0'; |
1467 |
|
1468 |
diff --git a/sys-cluster/mpich2/files/mpich2-1.0.8-pkgconfig.patch b/sys-cluster/mpich2/files/mpich2-1.0.8-pkgconfig.patch |
1469 |
deleted file mode 100644 |
1470 |
index 1d3a456bd..000000000 |
1471 |
--- a/sys-cluster/mpich2/files/mpich2-1.0.8-pkgconfig.patch |
1472 |
+++ /dev/null |
1473 |
@@ -1,17 +0,0 @@ |
1474 |
---- a/mpich2-1.0.8/src/pkgconfig/mpich2-ch3.pc.in 2008-11-04 20:36:38.931970012 -0500 |
1475 |
-+++ b/mpich2-1.0.8/src/pkgconfig/mpich2-ch3.pc.in 2009-02-11 21:39:00.279871039 -0500 |
1476 |
-@@ -1,8 +1,12 @@ |
1477 |
- # this gives access to the mpich2 header files |
1478 |
-+prefix=@prefix@ |
1479 |
-+exec_prefix=@exec_prefix@ |
1480 |
-+libdir=@libdir@ |
1481 |
-+includedir=@includedir@ |
1482 |
- |
1483 |
- Name: mpich2 |
1484 |
- Description: MPICH2 is an implementation of the Message-Passing Interface (MPI). The goals of MPICH2 are to provide an MPI implementation for important platforms, including clusters, SMPs, and massively parallel processors. It also provides a vehicle for MPI implementation research and for developing new and better parallel programming environments. |
1485 |
- Version: @VERSION@ |
1486 |
- Requires: |
1487 |
--Libs: -L@libdir@ -lmpich -lmpichcxx @LIBS@ |
1488 |
--Cflags: @CFLAGS@ -I@includedir@ -DMPICH_IGNORE_CXX_SEEK |
1489 |
-+Libs: -L${libdir} -lmpich -lmpichcxx @LIBS@ |
1490 |
-+Cflags: @CFLAGS@ -I${includedir} -DMPICH_IGNORE_CXX_SEEK |
1491 |
|
1492 |
diff --git a/sys-cluster/mpich2/files/mpich2-1.2.1-fix-missing-libs.patch b/sys-cluster/mpich2/files/mpich2-1.2.1-fix-missing-libs.patch |
1493 |
deleted file mode 100644 |
1494 |
index 1f2ba04cf..000000000 |
1495 |
--- a/sys-cluster/mpich2/files/mpich2-1.2.1-fix-missing-libs.patch |
1496 |
+++ /dev/null |
1497 |
@@ -1,33 +0,0 @@ |
1498 |
-From 94707148dc8c33a1d3245e1f0dd7e28542f91e75 Mon Sep 17 00:00:00 2001 |
1499 |
-From: Steve Arnold <nerdboy@g.o> |
1500 |
-Date: Wed, 4 Aug 2010 23:34:06 -0400 |
1501 |
-Subject: [PATCH] Added missing library references for the f90 and C++ shared libraries |
1502 |
- |
1503 |
-Backport of upstream r6848. Directly modifies the Makefile.in to avoid |
1504 |
-having to call simplemake to regenerate the entire build system. |
1505 |
- |
1506 |
-http://trac.mcs.anl.gov/projects/mpich2/changeset/6848 |
1507 |
---- |
1508 |
- Makefile.in | 4 ++-- |
1509 |
- 1 files changed, 2 insertions(+), 2 deletions(-) |
1510 |
- |
1511 |
-diff --git a/Makefile.in b/Makefile.in |
1512 |
-index cbe4a93..d12babb 100644 |
1513 |
---- a/Makefile.in |
1514 |
-+++ b/Makefile.in |
1515 |
-@@ -143,10 +143,10 @@ lib/libf${MPILIBNAME}.@SHLIB_EXT@: lib/libf${MPILIBNAME}.la |
1516 |
- (cd lib && $(CREATESHLIB) --mode=link -version-info "@ABIVERSION@" -o libf${MPILIBNAME}.la -rpath $(libdir) -L. -l$(MPILIBNAME) -ldflags "$(LDFLAGS)" $(LIBS)) |
1517 |
- # Build the shared library from the shared object files |
1518 |
- lib/lib${MPILIBNAME}f90.@SHLIB_EXT@: lib/lib${MPILIBNAME}f90.la |
1519 |
-- (cd lib && $(CREATESHLIB) --mode=link -version-info "@ABIVERSION@" -o lib${MPILIBNAME}f90.la -rpath $(libdir) -ldflags "$(LDFLAGS)" $(LIBS)) |
1520 |
-+ (cd lib && $(CREATESHLIB) --mode=link -version-info "@ABIVERSION@" -o lib${MPILIBNAME}f90.la -rpath $(libdir) -L. -l$(MPILIBNAME) -ldflags "$(LDFLAGS)" $(LIBS)) |
1521 |
- # Build the shared library from the shared object files |
1522 |
- lib/lib${MPICXXLIBNAME}.@SHLIB_EXT@: lib/lib${MPICXXLIBNAME}.la |
1523 |
-- (cd lib && $(CREATESHLIB) --mode=link -version-info "@ABIVERSION@" -o lib${MPICXXLIBNAME}.la -rpath $(libdir) -ldflags "$(LDFLAGS)" $(LIBS)) |
1524 |
-+ (cd lib && $(CREATESHLIB) --mode=link -version-info "@ABIVERSION@" -o lib${MPICXXLIBNAME}.la -rpath $(libdir) -L. -l$(MPILIBNAME) -ldflags "$(LDFLAGS)" $(LIBS)) |
1525 |
- |
1526 |
- # -------------------------------------------------------------------------- |
1527 |
- .libstamp0: |
1528 |
--- |
1529 |
-1.7.1 |
1530 |
- |
1531 |
|
1532 |
diff --git a/sys-cluster/mpich2/files/mpich2-1.3-libtvmpich2.so-respect-user-LDFLAGS.patch b/sys-cluster/mpich2/files/mpich2-1.3-libtvmpich2.so-respect-user-LDFLAGS.patch |
1533 |
deleted file mode 100644 |
1534 |
index 2a7ba2fb1..000000000 |
1535 |
--- a/sys-cluster/mpich2/files/mpich2-1.3-libtvmpich2.so-respect-user-LDFLAGS.patch |
1536 |
+++ /dev/null |
1537 |
@@ -1,25 +0,0 @@ |
1538 |
-From e51d6ec114dafc10a7eeeeb04c1dfdc7a7b7514c Mon Sep 17 00:00:00 2001 |
1539 |
-From: Justin Bronder <jsbronder@×××××.com> |
1540 |
-Date: Sat, 25 Sep 2010 12:04:35 -0400 |
1541 |
-Subject: [PATCH] debugger: make libtvmpich2.so respect user LDFLAGS |
1542 |
- |
1543 |
---- |
1544 |
- src/mpi/debugger/Makefile.in | 2 +- |
1545 |
- 1 files changed, 1 insertions(+), 1 deletions(-) |
1546 |
- |
1547 |
-diff --git a/src/mpi/debugger/Makefile.in b/src/mpi/debugger/Makefile.in |
1548 |
-index 834079f..8723e6f 100644 |
1549 |
---- a/src/mpi/debugger/Makefile.in |
1550 |
-+++ b/src/mpi/debugger/Makefile.in |
1551 |
-@@ -172,7 +172,7 @@ SOURCEFILES = $(SOURCES) |
1552 |
- # There is no static debugger interface library |
1553 |
- # Force a custom target |
1554 |
- ./libtvmpich2.@SHLIB_EXT@: ./libtvmpich2.la |
1555 |
-- (cd . && $(CREATESHLIB) -libtype=@DBG_SHLIB_TYPE@ --mode=link -cc="@CC_SHL_DBG@" -clink="@C_LINK_SHL_DBG@" -o libtvmpich2.la -rpath $(libdir) ) |
1556 |
-+ (cd . && $(CREATESHLIB) -libtype=@DBG_SHLIB_TYPE@ --mode=link -cc="@CC_SHL_DBG@" -clink="@C_LINK_SHL_DBG@" -o libtvmpich2.la -rpath $(libdir) -ldflags "$(LDFLAGS)" ) |
1557 |
- |
1558 |
- # |
1559 |
- # We need to make sure that dbginit is compiled with -g, so |
1560 |
--- |
1561 |
-1.7.2.2 |
1562 |
- |
1563 |
|
1564 |
diff --git a/sys-cluster/mpich2/files/mpich2-hvector.patch b/sys-cluster/mpich2/files/mpich2-hvector.patch |
1565 |
deleted file mode 100644 |
1566 |
index 9d67561e3..000000000 |
1567 |
--- a/sys-cluster/mpich2/files/mpich2-hvector.patch |
1568 |
+++ /dev/null |
1569 |
@@ -1,63 +0,0 @@ |
1570 |
---- src/binding/f90/buildiface 2011-12-06 09:57:04.000000000 +0100 |
1571 |
-+++ src/binding/f90/buildiface 2011-12-06 09:57:54.000000000 +0100 |
1572 |
-@@ -117,9 +117,13 @@ |
1573 |
- 'Type_hindexed-3' => 'int[]', |
1574 |
- 'Type_indexed-2' => 'int[]', |
1575 |
- 'Type_indexed-3' => 'int[]', |
1576 |
-+ 'Type_hvector-3' => 'int', |
1577 |
- 'Type_struct-2' => 'int[]', |
1578 |
- 'Type_struct-3' => 'int[]', |
1579 |
- 'Type_struct-4' => 'MPI_Datatype[]', |
1580 |
-+ 'Type_extent-2' => 'int', |
1581 |
-+ 'Type_lb-2' => 'int', |
1582 |
-+ 'Type_ub-2' => 'int', |
1583 |
- 'Waitall-2' => 'MPI_Request[]', |
1584 |
- 'Waitall-3' => 'MPI_Status[]', |
1585 |
- 'Waitany-2' => 'MPI_Request[]', |
1586 |
---- src/binding/f90/mpi_base.f90.in 2011-12-06 09:58:42.000000000 +0100 |
1587 |
-+++ src/binding/f90/mpi_base.f90.in 2011-12-06 10:00:30.000000000 +0100 |
1588 |
-@@ -15,9 +15,7 @@ |
1589 |
- END SUBROUTINE MPI_COMM_FREE_KEYVAL |
1590 |
- |
1591 |
- SUBROUTINE MPI_TYPE_EXTENT(v0,v1,ierror) |
1592 |
-- USE MPI_CONSTANTS,ONLY:MPI_ADDRESS_KIND |
1593 |
-- INTEGER v0 |
1594 |
-- INTEGER(KIND=MPI_ADDRESS_KIND) v1 |
1595 |
-+ INTEGER v0, v1 |
1596 |
- INTEGER ierror |
1597 |
- END SUBROUTINE MPI_TYPE_EXTENT |
1598 |
- |
1599 |
-@@ -114,9 +112,7 @@ |
1600 |
- END SUBROUTINE MPI_OP_COMMUTATIVE |
1601 |
- |
1602 |
- SUBROUTINE MPI_TYPE_LB(v0,v1,ierror) |
1603 |
-- USE MPI_CONSTANTS,ONLY:MPI_ADDRESS_KIND |
1604 |
-- INTEGER v0 |
1605 |
-- INTEGER(KIND=MPI_ADDRESS_KIND) v1 |
1606 |
-+ INTEGER v0, v1 |
1607 |
- INTEGER ierror |
1608 |
- END SUBROUTINE MPI_TYPE_LB |
1609 |
- |
1610 |
-@@ -562,9 +558,7 @@ |
1611 |
- END SUBROUTINE MPI_TYPE_CREATE_RESIZED |
1612 |
- |
1613 |
- SUBROUTINE MPI_TYPE_UB(v0,v1,ierror) |
1614 |
-- USE MPI_CONSTANTS,ONLY:MPI_ADDRESS_KIND |
1615 |
-- INTEGER v0 |
1616 |
-- INTEGER(KIND=MPI_ADDRESS_KIND) v1 |
1617 |
-+ INTEGER v0, v1 |
1618 |
- INTEGER ierror |
1619 |
- END SUBROUTINE MPI_TYPE_UB |
1620 |
- |
1621 |
-@@ -822,10 +816,7 @@ |
1622 |
- END SUBROUTINE MPI_GET_VERSION |
1623 |
- |
1624 |
- SUBROUTINE MPI_TYPE_HVECTOR(v0,v1,v2,v3,v4,ierror) |
1625 |
-- USE MPI_CONSTANTS,ONLY:MPI_ADDRESS_KIND |
1626 |
-- INTEGER v0, v1 |
1627 |
-- INTEGER(KIND=MPI_ADDRESS_KIND) v2 |
1628 |
-- INTEGER v3, v4 |
1629 |
-+ INTEGER v0, v1, v2, v3, v4 |
1630 |
- INTEGER ierror |
1631 |
- END SUBROUTINE MPI_TYPE_HVECTOR |
1632 |
- |
1633 |
|
1634 |
diff --git a/sys-cluster/mpich2/metadata.xml b/sys-cluster/mpich2/metadata.xml |
1635 |
deleted file mode 100644 |
1636 |
index 6cbe440fa..000000000 |
1637 |
--- a/sys-cluster/mpich2/metadata.xml |
1638 |
+++ /dev/null |
1639 |
@@ -1,21 +0,0 @@ |
1640 |
-<?xml version="1.0" encoding="UTF-8"?> |
1641 |
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
1642 |
-<pkgmetadata> |
1643 |
- <maintainer type="person"> |
1644 |
- <email>jsbronder@g.o</email> |
1645 |
- <name>Justin Bronder</name> |
1646 |
- </maintainer> |
1647 |
- <maintainer type="person"> |
1648 |
- <email>balaji@×××××××.gov</email> |
1649 |
- <name>Pavan Balaji</name> |
1650 |
- <description>Upstream Contact</description> |
1651 |
- </maintainer> |
1652 |
- <maintainer type="project"> |
1653 |
- <email>cluster@g.o</email> |
1654 |
- <name>Gentoo Cluster Project</name> |
1655 |
- </maintainer> |
1656 |
- <use> |
1657 |
- <flag name="mpi-threads">Enable MPI_THREAD_MULTIPLE</flag> |
1658 |
- <flag name="romio">Build the ROMIO MPI-IO component</flag> |
1659 |
- </use> |
1660 |
-</pkgmetadata> |
1661 |
|
1662 |
diff --git a/sys-cluster/mpich2/mpich2-1.5.ebuild b/sys-cluster/mpich2/mpich2-1.5.ebuild |
1663 |
deleted file mode 100644 |
1664 |
index 29288ffcc..000000000 |
1665 |
--- a/sys-cluster/mpich2/mpich2-1.5.ebuild |
1666 |
+++ /dev/null |
1667 |
@@ -1,127 +0,0 @@ |
1668 |
-# Copyright 1999-2014 Gentoo Foundation |
1669 |
-# Distributed under the terms of the GNU General Public License v2 |
1670 |
- |
1671 |
-EAPI=5 |
1672 |
- |
1673 |
-FORTRAN_NEEDED=fortran |
1674 |
- |
1675 |
-inherit fortran-2 mpi |
1676 |
- |
1677 |
-MY_PV=${PV/_/} |
1678 |
-DESCRIPTION="A high performance and portable MPI implementation" |
1679 |
-HOMEPAGE="http://www.mcs.anl.gov/research/projects/mpich2/index.php" |
1680 |
-SRC_URI="http://www.mcs.anl.gov/research/projects/mpich2/downloads/tarballs/${MY_PV}/${PN}-${MY_PV}.tar.gz" |
1681 |
- |
1682 |
-SLOT="0" |
1683 |
-LICENSE="mpich2" |
1684 |
-KEYWORDS="~amd64 ~x86" |
1685 |
-IUSE="+cxx doc fortran mpi-threads romio threads" |
1686 |
- |
1687 |
-COMMON_DEPEND=" |
1688 |
- dev-libs/libaio |
1689 |
- sys-apps/hwloc |
1690 |
- romio? ( net-fs/nfs-utils ) |
1691 |
- $(mpi_imp_deplist)" |
1692 |
- |
1693 |
-DEPEND="${COMMON_DEPEND} |
1694 |
- dev-lang/perl |
1695 |
- sys-devel/libtool" |
1696 |
- |
1697 |
-RDEPEND="${COMMON_DEPEND}" |
1698 |
- |
1699 |
-S="${WORKDIR}"/${PN}-${MY_PV} |
1700 |
- |
1701 |
-pkg_setup() { |
1702 |
- FORTRAN_STANDARD="77 90" |
1703 |
- fortran-2_pkg_setup |
1704 |
- MPI_ESELECT_FILE="eselect.mpi.mpich2" |
1705 |
- |
1706 |
- if use mpi-threads && ! use threads; then |
1707 |
- ewarn "mpi-threads requires threads, assuming that's what you want" |
1708 |
- fi |
1709 |
- |
1710 |
- if mpi_classed; then |
1711 |
- MPD_CONF_FILE_DIR=/etc/$(mpi_class) |
1712 |
- else |
1713 |
- MPD_CONF_FILE_DIR=/etc/${PN} |
1714 |
- fi |
1715 |
- |
1716 |
-} |
1717 |
- |
1718 |
-src_prepare() { |
1719 |
- # Using MPICH2LIB_LDFLAGS doesn't seem to full work. |
1720 |
- sed -i 's| *@WRAPPER_LDFLAGS@ *||' \ |
1721 |
- src/packaging/pkgconfig/mpich2.pc.in \ |
1722 |
- src/env/*.in \ |
1723 |
- || die |
1724 |
-} |
1725 |
- |
1726 |
-src_configure() { |
1727 |
- local c="--enable-shared" |
1728 |
- |
1729 |
- # The configure statements can be somewhat confusing, as they |
1730 |
- # don't all show up in the top level configure, however, they |
1731 |
- # are picked up in the children directories. |
1732 |
- |
1733 |
- if use mpi-threads; then |
1734 |
- # MPI-THREAD requries threading. |
1735 |
- c="${c} --with-thread-package=pthreads" |
1736 |
- c="${c} --enable-threads=runtime" |
1737 |
- else |
1738 |
- if use threads ; then |
1739 |
- c="${c} --with-thread-package=pthreads" |
1740 |
- else |
1741 |
- c="${c} --with-thread-package=none" |
1742 |
- fi |
1743 |
- c="${c} --enable-threads=single" |
1744 |
- fi |
1745 |
- |
1746 |
- if ! mpi_classed; then |
1747 |
- c="${c} --sysconfdir=${EPREFIX}/etc/${PN}" |
1748 |
- c="${c} --docdir=${EPREFIX}/usr/share/doc/${PF}" |
1749 |
- else |
1750 |
- c="${c} --docdir=$(mpi_root)/usr/share/doc/${PF}" |
1751 |
- fi |
1752 |
- |
1753 |
- export MPICH2LIB_CFLAGS=${CFLAGS} |
1754 |
- export MPICH2LIB_CPPFLAGS=${CPPFLAGS} |
1755 |
- export MPICH2LIB_CXXFLAGS=${CXXFLAGS} |
1756 |
- export MPICH2LIB_FFLAGS=${FFLAGS} |
1757 |
- export MPICH2LIB_FCFLAGS=${FCFLAGS} |
1758 |
- export MPICH2LIB_LDFLAGS=${LDFLAGS} |
1759 |
- unset CFLAGS CPPFLAGS CXXFLAGS FFLAGS FCFLAGS LDFLAGS |
1760 |
- |
1761 |
- econf $(mpi_econf_args) ${c} \ |
1762 |
- --with-pm=hydra \ |
1763 |
- --disable-mpe \ |
1764 |
- --disable-fast \ |
1765 |
- --enable-smpcoll \ |
1766 |
- --enable-versioning \ |
1767 |
- $(use_enable romio) \ |
1768 |
- $(use_enable cxx) \ |
1769 |
- $(use_enable fortran f77) \ |
1770 |
- $(use_enable fortran fc) |
1771 |
-} |
1772 |
- |
1773 |
-src_test() { |
1774 |
- emake -j1 check |
1775 |
-} |
1776 |
- |
1777 |
-src_install() { |
1778 |
- local d=$(echo ${ED}/$(mpi_root)/ | sed 's,///*,/,g') |
1779 |
- |
1780 |
- default |
1781 |
- |
1782 |
- mpi_dodir /usr/share/doc/${PF} |
1783 |
- mpi_dodoc COPYRIGHT README{,.envvar} CHANGES RELEASE_NOTES |
1784 |
- mpi_newdoc src/pm/hydra/README README.hydra |
1785 |
- if use romio; then |
1786 |
- mpi_newdoc src/mpi/romio/README README.romio |
1787 |
- fi |
1788 |
- |
1789 |
- if ! use doc; then |
1790 |
- rm -rf "${d}"usr/share/doc/${PF}/www* |
1791 |
- fi |
1792 |
- |
1793 |
- mpi_imp_add_eselect |
1794 |
-} |
1795 |
|
1796 |
diff --git a/sys-cluster/mvapich2/files/eselect.mpi.mvapich2 b/sys-cluster/mvapich2/files/eselect.mpi.mvapich2 |
1797 |
deleted file mode 100644 |
1798 |
index d1d2131a1..000000000 |
1799 |
--- a/sys-cluster/mvapich2/files/eselect.mpi.mvapich2 |
1800 |
+++ /dev/null |
1801 |
@@ -1,8 +0,0 @@ |
1802 |
-MPI_CC=@ROOT@/usr/bin/mpicc |
1803 |
-MPI_CXX=@ROOT@/usr/bin/mpic++ |
1804 |
-MPI_F77=@ROOT@/usr/bin/mpif77 |
1805 |
-MPI_F90=@ROOT@/usr/bin/mpif90 |
1806 |
-MPI_BUILT_WITH=@BUILT_WITH@ |
1807 |
-PATH=@ROOT@/usr/bin |
1808 |
-MANPATH=@ROOT@/usr/share/man |
1809 |
-LD_LIBRARY_PATH=@ROOT@/usr/@LIBDIR@ |
1810 |
|
1811 |
diff --git a/sys-cluster/mvapich2/metadata.xml b/sys-cluster/mvapich2/metadata.xml |
1812 |
deleted file mode 100644 |
1813 |
index 50e4975c9..000000000 |
1814 |
--- a/sys-cluster/mvapich2/metadata.xml |
1815 |
+++ /dev/null |
1816 |
@@ -1,16 +0,0 @@ |
1817 |
-<?xml version="1.0" encoding="UTF-8"?> |
1818 |
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
1819 |
-<pkgmetadata> |
1820 |
- <maintainer type="project"> |
1821 |
- <email>cluster@g.o</email> |
1822 |
- <name>Gentoo Cluster Project</name> |
1823 |
- </maintainer> |
1824 |
- <longdescription> |
1825 |
-MVAPICH2 MPI-over-infiniband package auto-configured for OpenIB. |
1826 |
-</longdescription> |
1827 |
- <use> |
1828 |
- <flag name="large-cluster">Automatically generated description for large-cluster</flag> |
1829 |
- <flag name="medium-cluster">Automatically generated description for medium-cluster</flag> |
1830 |
- <flag name="romio">Automatically generated description for romio</flag> |
1831 |
- </use> |
1832 |
-</pkgmetadata> |
1833 |
|
1834 |
diff --git a/sys-cluster/mvapich2/mvapich2-1.6-r1.ebuild b/sys-cluster/mvapich2/mvapich2-1.6-r1.ebuild |
1835 |
deleted file mode 100644 |
1836 |
index 8ed791509..000000000 |
1837 |
--- a/sys-cluster/mvapich2/mvapich2-1.6-r1.ebuild |
1838 |
+++ /dev/null |
1839 |
@@ -1,145 +0,0 @@ |
1840 |
-# Copyright 1999-2015 Gentoo Foundation |
1841 |
-# Distributed under the terms of the GNU General Public License v2 |
1842 |
- |
1843 |
-EAPI=5 |
1844 |
- |
1845 |
-inherit flag-o-matic fortran-2 mpi |
1846 |
- |
1847 |
-DESCRIPTION="MVAPICH2 MPI-over-infiniband package auto-configured for OpenIB" |
1848 |
-HOMEPAGE="http://mvapich.cse.ohio-state.edu/" |
1849 |
-SRC_URI="${HOMEPAGE}/download/mvapich2/mvapich2-${PV/_/-}.tgz" |
1850 |
- |
1851 |
-SLOT="0" |
1852 |
-LICENSE="BSD" |
1853 |
-KEYWORDS="~amd64 ~x86" |
1854 |
-IUSE="debug fortran large-cluster medium-cluster romio threads" |
1855 |
- |
1856 |
-RDEPEND=" |
1857 |
- sys-fabric/libibverbs:= |
1858 |
- sys-fabric/libibumad:= |
1859 |
- sys-fabric/libibmad:= |
1860 |
- sys-fabric/librdmacm:= |
1861 |
- " |
1862 |
-DEPEND="${RDEPEND}" |
1863 |
- |
1864 |
-S="${WORKDIR}/mvapich2-${PV/_/-}" |
1865 |
- |
1866 |
-pkg_setup() { |
1867 |
- fortran-2_pkg_setup |
1868 |
- MPI_ESELECT_FILE="eselect.mpi.mvapich2" |
1869 |
- |
1870 |
- if [ -z "${MVAPICH_HCA_TYPE}" ]; then |
1871 |
- elog "${PN} needs to know which HCA it should optimize for. This is" |
1872 |
- elog "passed to the ebuild with the variable, \${MVAPICH_HCA_TYPE}." |
1873 |
- elog "Please choose one of: _MLX_PCI_EX_SDR_, _MLX_PCI_EX_DDR_," |
1874 |
- elog "_MLX_PCI_X, _PATH_HT_, or _IBM_EHCA_." |
1875 |
- elog "See make.mvapich2.detect in ${S} for more information." |
1876 |
- die "MVAPICH_HCA_TYPE undefined" |
1877 |
- fi |
1878 |
- |
1879 |
- case ${ARCH} in |
1880 |
- amd64) |
1881 |
- if grep Intel /proc/cpuinfo &>/dev/null; then |
1882 |
- BUILD_ARCH=-D_EM64T_ |
1883 |
- else |
1884 |
- BUILD_ARCH=-D_X86_64_ |
1885 |
- fi |
1886 |
- ;; |
1887 |
- x86) |
1888 |
- BUILD_ARCH=-D_IA32_ |
1889 |
- ;; |
1890 |
- ia64) |
1891 |
- BUILD_ARCH=-D_IA64_ |
1892 |
- ;; |
1893 |
- ppc64) |
1894 |
- BUILD_ARCH=-D_PPC64_ |
1895 |
- ;; |
1896 |
- *) |
1897 |
- die "unsupported architecture: ${ARCH}" |
1898 |
- ;; |
1899 |
- esac |
1900 |
-} |
1901 |
- |
1902 |
-src_prepare() { |
1903 |
- einfo "Disabling examples" |
1904 |
- # Examples are always compiled with the default 'all' target. This |
1905 |
- # causes problems when we don't build support for everything, including |
1906 |
- # threads, mpe2, etc. So we're not going to build them. |
1907 |
- sed -i 's:.*cd examples && ${MAKE} all.*::' Makefile.in || die |
1908 |
-} |
1909 |
- |
1910 |
-src_configure() { |
1911 |
- local c="--with-device=osu_ch3:mrail |
1912 |
- --with-rdma=gen2 |
1913 |
- --with-pm=mpd |
1914 |
- $(use_enable romio) |
1915 |
- --with-mpe=no" |
1916 |
- |
1917 |
- # TODO Shared libs should build with this, but they don't |
1918 |
- # --enable-shared=gcc" |
1919 |
- |
1920 |
- local enable_srq |
1921 |
- local vcluster=-D_SMALL_CLUSTER |
1922 |
- |
1923 |
- use large-cluster && vcluster=-D_LARGE_CLUSTER |
1924 |
- use medium-cluster && vcluster=-D_MEDIUM_CLUSTER |
1925 |
- [ "${MVAPICH_HCA_TYPE}" == "_MLX_PCI_X_" ] && enable_srq="-DSRQ" |
1926 |
- |
1927 |
- append-ldflags "-lrdmacm" |
1928 |
- append-flags "-DADAPTIVE_RDMA_FAST_PATH -DRDMA_CM" |
1929 |
- append-ldflags "-libverbs -libumad -libmad" |
1930 |
- |
1931 |
- append-flags "${BUILD_ARCH} -DUSE_INLINE -D_SMP_ -D_GNU_SOURCE" |
1932 |
- append-flags "${enable_srq} -DUSE_HEADER_CACHING -DLAZY_MEM_UNREGISTER" |
1933 |
- append-flags "-DONE_SIDED -D${MVAPICH_HCA_TYPE} ${vcluster}" |
1934 |
- append-flags "-DMPID_USE_SEQUENCE_NUMBERS -DUSE_MPD_RING" |
1935 |
- |
1936 |
- use debug && c="${c} --enable-g=all --enable-debuginfo" |
1937 |
- |
1938 |
- if use threads; then |
1939 |
- c="${c} --enable-threads=multiple --with-thread-package=pthreads" |
1940 |
- append-flags "-pthread" |
1941 |
- else |
1942 |
- c="${c} --with-thread-package=none" |
1943 |
- fi |
1944 |
- |
1945 |
- # enable f90 support for appropriate compilers |
1946 |
- if use fortran; then |
1947 |
- case "$(tc-getFC)" in |
1948 |
- gfortran|ifort|f95) |
1949 |
- c="${c} --enable-f77 --enable-f90";; |
1950 |
- g77|f77|f2c) |
1951 |
- c="${c} --enable-f77 --disable-f90";; |
1952 |
- esac |
1953 |
- else |
1954 |
- c="${c} --disable-f77 --disable-f90" |
1955 |
- fi |
1956 |
- |
1957 |
- sed -i \ |
1958 |
- -e 's/ ${exec_prefix}/ ${DESTDIR}${exec_prefix}/' \ |
1959 |
- -e 's/ ${libdir}/ ${DESTDIR}${libdir}/' \ |
1960 |
- ${S/-beta2/}/Makefile.in || die |
1961 |
- sed -i '/bindir/s/ ${bindir}/ ${DESTDIR}${bindir}/' ${S/-beta2/}/src/pm/mpd/Makefile.in || die |
1962 |
- cd ${S/-beta2/} || die |
1963 |
- |
1964 |
- ! mpi_classed && c="${c} --sysconfdir=/etc/${PN}" |
1965 |
- econf $(mpi_econf_args) ${c} |
1966 |
-} |
1967 |
- |
1968 |
-src_install() { |
1969 |
- emake DESTDIR="${D}" |
1970 |
- mpi_dodoc CHANGES_MPICH2 COPYRIGHT COPYRIGHT_MVAPICH2 LICENSE.TXT \ |
1971 |
- README* RELEASE_NOTES* |
1972 |
- mpi_imp_add_eselect |
1973 |
-} |
1974 |
- |
1975 |
-pkg_postinst() { |
1976 |
- einfo "To allow normal users to use infiniband, it is necessary to" |
1977 |
- einfo "increase the system limits on locked memory." |
1978 |
- einfo "You must increase the kernel.shmmax sysctl value, and increase" |
1979 |
- einfo "the memlock limits in /etc/security/limits.conf. i.e.:" |
1980 |
- echo |
1981 |
- einfo "echo 'kernel.shmmax = 512000000' >> /etc/sysctl.conf" |
1982 |
- einfo "echo 512000000 > /proc/sys/kernel/shmmax" |
1983 |
- einfo "echo -e '* soft memlock 500000\n* hard memlock 500000' > /etc/security/limits.conf" |
1984 |
-} |
1985 |
|
1986 |
diff --git a/sys-cluster/openmpi/files/eselect.mpi.openmpi b/sys-cluster/openmpi/files/eselect.mpi.openmpi |
1987 |
deleted file mode 100644 |
1988 |
index c1a9373f3..000000000 |
1989 |
--- a/sys-cluster/openmpi/files/eselect.mpi.openmpi |
1990 |
+++ /dev/null |
1991 |
@@ -1,8 +0,0 @@ |
1992 |
-MPI_CC=@ROOT@usr/bin/mpicc |
1993 |
-MPI_CXX=@ROOT@usr/bin/mpic++ |
1994 |
-MPI_F77=@ROOT@usr/bin/mpif77 |
1995 |
-MPI_FC=@ROOT@usr/bin/mpif90 |
1996 |
-CLASS_BASE_MPI_IMP=@BASE_IMP@ |
1997 |
-PATH=@ROOT@usr/bin |
1998 |
-MANPATH=@ROOT@usr/share/man |
1999 |
-LD_LIBRARY_PATH=@ROOT@usr/@LIBDIR@ |
2000 |
|
2001 |
diff --git a/sys-cluster/openmpi/files/hooks-disable-malloc-override-inside-of-Gentoo-sandb.patch b/sys-cluster/openmpi/files/hooks-disable-malloc-override-inside-of-Gentoo-sandb.patch |
2002 |
deleted file mode 100644 |
2003 |
index 197430aee..000000000 |
2004 |
--- a/sys-cluster/openmpi/files/hooks-disable-malloc-override-inside-of-Gentoo-sandb.patch |
2005 |
+++ /dev/null |
2006 |
@@ -1,42 +0,0 @@ |
2007 |
-From 3bd5897c7ca8ab61fb024957aeae891e204b3e3f Mon Sep 17 00:00:00 2001 |
2008 |
-From: Justin Bronder <jsbronder@×××××.com> |
2009 |
-Date: Mon, 1 Jul 2013 20:37:17 -0400 |
2010 |
-Subject: [PATCH] hooks: disable malloc override inside of Gentoo sandbox |
2011 |
- |
2012 |
-As described in the comments in the source, Gentoo's own version of |
2013 |
-fakeroot, sandbox, also runs into hangs when malloc is overridden. |
2014 |
-Sandbox environments can easily be detected by looking for SANDBOX_PID |
2015 |
-in the environment. When detected, employ the same fix used for |
2016 |
-fakeroot. |
2017 |
- |
2018 |
-See https://bugs.gentoo.org/show_bug.cgi?id=462602 |
2019 |
---- |
2020 |
- opal/mca/memory/linux/hooks.c | 11 +++++++++-- |
2021 |
- 1 file changed, 9 insertions(+), 2 deletions(-) |
2022 |
- |
2023 |
-diff --git a/opal/mca/memory/linux/hooks.c b/opal/mca/memory/linux/hooks.c |
2024 |
-index 6a1646f..5ded08c 100644 |
2025 |
---- a/opal/mca/memory/linux/hooks.c |
2026 |
-+++ b/opal/mca/memory/linux/hooks.c |
2027 |
-@@ -747,9 +747,16 @@ static void opal_memory_linux_malloc_init_hook(void) |
2028 |
- "fakeroot" build environment that allocates memory during |
2029 |
- stat() (see http://bugs.debian.org/531522). It may not be |
2030 |
- necessary any more since we're using access(), not stat(). But |
2031 |
-- we'll leave the check, anyway. */ |
2032 |
-+ we'll leave the check, anyway. |
2033 |
-+ |
2034 |
-+ This is also an issue when using Gentoo's version of 'fakeroot', |
2035 |
-+ sandbox v2.5. Sandbox environments can also be detected fairly |
2036 |
-+ easily by looking for SANDBOX_ON. |
2037 |
-+ */ |
2038 |
-+ |
2039 |
- if (getenv("FAKEROOTKEY") != NULL || |
2040 |
-- getenv("FAKED_MODE") != NULL) { |
2041 |
-+ getenv("FAKED_MODE") != NULL || |
2042 |
-+ getenv("SANDBOX_ON") != NULL ) { |
2043 |
- return; |
2044 |
- } |
2045 |
- |
2046 |
--- |
2047 |
-1.8.1.5 |
2048 |
- |
2049 |
|
2050 |
diff --git a/sys-cluster/openmpi/files/openmpi-ltdl.patch b/sys-cluster/openmpi/files/openmpi-ltdl.patch |
2051 |
deleted file mode 100644 |
2052 |
index a288ea272..000000000 |
2053 |
--- a/sys-cluster/openmpi/files/openmpi-ltdl.patch |
2054 |
+++ /dev/null |
2055 |
@@ -1,78 +0,0 @@ |
2056 |
-diff -up openmpi-1.6.3/ompi/debuggers/dlopen_test.c.ltdl openmpi-1.6.3/ompi/debuggers/dlopen_test.c |
2057 |
---- openmpi-1.6.3/ompi/debuggers/dlopen_test.c.ltdl 2012-04-03 08:30:25.000000000 -0600 |
2058 |
-+++ openmpi-1.6.3/ompi/debuggers/dlopen_test.c 2012-11-02 14:50:12.613702426 -0600 |
2059 |
-@@ -13,7 +13,17 @@ |
2060 |
- #include <string.h> |
2061 |
- #include <stdlib.h> |
2062 |
- |
2063 |
--#include "opal/libltdl/ltdl.h" |
2064 |
-+#if OPAL_WANT_LIBLTDL |
2065 |
-+ #ifndef __WINDOWS__ |
2066 |
-+ #if OPAL_LIBLTDL_INTERNAL |
2067 |
-+ #include "opal/libltdl/ltdl.h" |
2068 |
-+ #else |
2069 |
-+ #include "ltdl.h" |
2070 |
-+ #endif |
2071 |
-+ #else |
2072 |
-+ #include "ltdl.h" |
2073 |
-+ #endif |
2074 |
-+#endif |
2075 |
- |
2076 |
- static int do_test(void); |
2077 |
- |
2078 |
-diff -up openmpi-1.6.3/ompi/debuggers/Makefile.am.ltdl openmpi-1.6.3/ompi/debuggers/Makefile.am |
2079 |
---- openmpi-1.6.3/ompi/debuggers/Makefile.am.ltdl 2012-04-03 08:30:25.000000000 -0600 |
2080 |
-+++ openmpi-1.6.3/ompi/debuggers/Makefile.am 2012-11-02 15:04:53.636926260 -0600 |
2081 |
-@@ -47,7 +47,7 @@ headers = \ |
2082 |
- |
2083 |
- dlopen_test_SOURCES = dlopen_test.c |
2084 |
- dlopen_test_CPPFLAGS = -I$(top_srcdir)/opal/libltdl |
2085 |
--dlopen_test_LDADD = $(top_builddir)/opal/libltdl/libltdlc.la |
2086 |
-+dlopen_test_LDADD = $(LIBLTDL) |
2087 |
- |
2088 |
- predefined_gap_test_SOURCES = predefined_gap_test.c |
2089 |
- predefined_gap_test_LDFLAGS = $(WRAPPER_EXTRA_LDFLAGS) |
2090 |
-diff -up openmpi-1.6.3/test/support/components.c.ltdl openmpi-1.6.3/test/support/components.c |
2091 |
---- openmpi-1.6.3/test/support/components.c.ltdl 2012-04-03 08:29:44.000000000 -0600 |
2092 |
-+++ openmpi-1.6.3/test/support/components.c 2012-11-02 14:50:29.204705380 -0600 |
2093 |
-@@ -24,7 +24,17 @@ |
2094 |
- |
2095 |
- #include "opal/constants.h" |
2096 |
- #include "opal/mca/mca.h" |
2097 |
--#include "opal/libltdl/ltdl.h" |
2098 |
-+#if OPAL_WANT_LIBLTDL |
2099 |
-+ #ifndef __WINDOWS__ |
2100 |
-+ #if OPAL_LIBLTDL_INTERNAL |
2101 |
-+ #include "opal/libltdl/ltdl.h" |
2102 |
-+ #else |
2103 |
-+ #include "ltdl.h" |
2104 |
-+ #endif |
2105 |
-+ #else |
2106 |
-+ #include "ltdl.h" |
2107 |
-+ #endif |
2108 |
-+#endif |
2109 |
- |
2110 |
- #include "components.h" |
2111 |
- |
2112 |
-diff -up openmpi-1.6.3/test/support/components.h.ltdl openmpi-1.6.3/test/support/components.h |
2113 |
---- openmpi-1.6.3/test/support/components.h.ltdl 2012-04-03 08:29:44.000000000 -0600 |
2114 |
-+++ openmpi-1.6.3/test/support/components.h 2012-11-02 14:50:22.409703519 -0600 |
2115 |
-@@ -20,7 +20,17 @@ |
2116 |
- #ifndef OMPI_SUPPORT_COMPONENTS_H |
2117 |
- #define OMPI_SUPPORT_COMPONENTS_H |
2118 |
- |
2119 |
--#include "opal/libltdl/ltdl.h" |
2120 |
-+#if OPAL_WANT_LIBLTDL |
2121 |
-+ #ifndef __WINDOWS__ |
2122 |
-+ #if OPAL_LIBLTDL_INTERNAL |
2123 |
-+ #include "opal/libltdl/ltdl.h" |
2124 |
-+ #else |
2125 |
-+ #include "ltdl.h" |
2126 |
-+ #endif |
2127 |
-+ #else |
2128 |
-+ #include "ltdl.h" |
2129 |
-+ #endif |
2130 |
-+#endif |
2131 |
- #include "opal/mca/mca.h" |
2132 |
- |
2133 |
- BEGIN_C_DECLS |
2134 |
|
2135 |
diff --git a/sys-cluster/openmpi/files/openmpi-r24328.patch b/sys-cluster/openmpi/files/openmpi-r24328.patch |
2136 |
deleted file mode 100644 |
2137 |
index bbd689d3a..000000000 |
2138 |
--- a/sys-cluster/openmpi/files/openmpi-r24328.patch |
2139 |
+++ /dev/null |
2140 |
@@ -1,54 +0,0 @@ |
2141 |
-From cf054cd92dfac55f3920e805d01c11dcfc2cd4fa Mon Sep 17 00:00:00 2001 |
2142 |
-From: jsquyres <jsquyres@×××××.com> |
2143 |
-Date: Mon, 28 Mar 2011 12:44:06 -0400 |
2144 |
-Subject: [PATCH] Fix some fairly-important typos (!) |
2145 |
- |
2146 |
-Upstream commit r24328. |
2147 |
---- |
2148 |
- test/datatype/ddt_lib.c | 2 +- |
2149 |
- test/datatype/ddt_raw.c | 2 +- |
2150 |
- test/datatype/opal_ddt_lib.c | 2 +- |
2151 |
- 3 files changed, 3 insertions(+), 3 deletions(-) |
2152 |
- |
2153 |
-diff --git a/test/datatype/ddt_lib.c b/test/datatype/ddt_lib.c |
2154 |
-index 015419d..c349384 100644 |
2155 |
---- a/test/datatype/ddt_lib.c |
2156 |
-+++ b/test/datatype/ddt_lib.c |
2157 |
-@@ -209,7 +209,7 @@ int mpich_typeub2( void ) |
2158 |
- |
2159 |
- int mpich_typeub3( void ) |
2160 |
- { |
2161 |
-- int blocklen[2], err = 0, idisp[3]; |
2162 |
-+ int blocklen[3], err = 0, idisp[3]; |
2163 |
- size_t sz; |
2164 |
- MPI_Aint disp[3], lb, ub, ex; |
2165 |
- ompi_datatype_t *types[3], *dt1, *dt2, *dt3, *dt4, *dt5; |
2166 |
-diff --git a/test/datatype/ddt_raw.c b/test/datatype/ddt_raw.c |
2167 |
-index eea9004..7effe65 100644 |
2168 |
---- a/test/datatype/ddt_raw.c |
2169 |
-+++ b/test/datatype/ddt_raw.c |
2170 |
-@@ -45,7 +45,7 @@ static int test_upper( unsigned int length ) |
2171 |
- { |
2172 |
- ompi_datatype_t *pdt; |
2173 |
- opal_convertor_t * pConv; |
2174 |
-- int rc; |
2175 |
-+ int rc = OMPI_SUCCESS; |
2176 |
- unsigned int i, iov_count, split_chunk, total_length; |
2177 |
- size_t max_data; |
2178 |
- struct iovec iov[5]; |
2179 |
-diff --git a/test/datatype/opal_ddt_lib.c b/test/datatype/opal_ddt_lib.c |
2180 |
-index e05bb06..dffd86c 100644 |
2181 |
---- a/test/datatype/opal_ddt_lib.c |
2182 |
-+++ b/test/datatype/opal_ddt_lib.c |
2183 |
-@@ -759,7 +759,7 @@ int mpich_typeub2( void ) |
2184 |
- |
2185 |
- int mpich_typeub3( void ) |
2186 |
- { |
2187 |
-- int blocklen[2], err = 0, idisp[3]; |
2188 |
-+ int blocklen[3], err = 0, idisp[3]; |
2189 |
- size_t sz; |
2190 |
- OPAL_PTRDIFF_TYPE disp[3], lb, ub, ex; |
2191 |
- opal_datatype_t *types[3], *dt1, *dt2, *dt3, *dt4, *dt5; |
2192 |
--- |
2193 |
-1.7.3.4 |
2194 |
- |
2195 |
|
2196 |
diff --git a/sys-cluster/openmpi/metadata.xml b/sys-cluster/openmpi/metadata.xml |
2197 |
deleted file mode 100644 |
2198 |
index 08b693bf5..000000000 |
2199 |
--- a/sys-cluster/openmpi/metadata.xml |
2200 |
+++ /dev/null |
2201 |
@@ -1,21 +0,0 @@ |
2202 |
-<?xml version="1.0" encoding="UTF-8"?> |
2203 |
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
2204 |
-<pkgmetadata> |
2205 |
- <maintainer type="person"> |
2206 |
- <email>jsbronder@g.o</email> |
2207 |
- </maintainer> |
2208 |
- <maintainer type="project"> |
2209 |
- <email>cluster@g.o</email> |
2210 |
- <name>Gentoo Cluster Project</name> |
2211 |
- </maintainer> |
2212 |
- <use> |
2213 |
- <flag name="cma">Enable the CMA (Cross Memory Attach) MCA</flag> |
2214 |
- <flag name="cuda">Add GPU direct support</flag> |
2215 |
- <flag name="heterogeneous">Enable features required for heterogeneous |
2216 |
-platform support</flag> |
2217 |
- <flag name="romio">Build the ROMIO MPI-IO component</flag> |
2218 |
- <flag name="mpi-threads">Enable MPI_THREAD_MULTIPLE</flag> |
2219 |
- <flag name="numa">Enable numactl to allow binding processes to CPUs</flag> |
2220 |
- <flag name="vt">Enable bundled VampirTrace support</flag> |
2221 |
- </use> |
2222 |
-</pkgmetadata> |
2223 |
|
2224 |
diff --git a/sys-cluster/openmpi/openmpi-1.10.7.ebuild b/sys-cluster/openmpi/openmpi-1.10.7.ebuild |
2225 |
deleted file mode 100644 |
2226 |
index de982dc42..000000000 |
2227 |
--- a/sys-cluster/openmpi/openmpi-1.10.7.ebuild |
2228 |
+++ /dev/null |
2229 |
@@ -1,194 +0,0 @@ |
2230 |
-# Copyright 1999-2018 Gentoo Foundation |
2231 |
-# Distributed under the terms of the GNU General Public License v2 |
2232 |
- |
2233 |
-EAPI=6 |
2234 |
- |
2235 |
-FORTRAN_NEEDED=fortran |
2236 |
- |
2237 |
-inherit cuda flag-o-matic fortran-2 java-pkg-opt-2 toolchain-funcs versionator multilib-minimal mpi |
2238 |
- |
2239 |
-MY_P=${P/-mpi} |
2240 |
-S=${WORKDIR}/${MY_P} |
2241 |
- |
2242 |
-IUSE_OPENMPI_FABRICS=" |
2243 |
- openmpi_fabrics_ofed |
2244 |
- openmpi_fabrics_knem |
2245 |
- openmpi_fabrics_psm" |
2246 |
- |
2247 |
-IUSE_OPENMPI_RM=" |
2248 |
- openmpi_rm_pbs |
2249 |
- openmpi_rm_slurm" |
2250 |
- |
2251 |
-IUSE_OPENMPI_OFED_FEATURES=" |
2252 |
- openmpi_ofed_features_control-hdr-padding |
2253 |
- openmpi_ofed_features_connectx-xrc |
2254 |
- openmpi_ofed_features_udcm |
2255 |
- openmpi_ofed_features_rdmacm |
2256 |
- openmpi_ofed_features_dynamic-sl |
2257 |
- openmpi_ofed_features_failover" |
2258 |
- |
2259 |
-DESCRIPTION="A high-performance message passing library (MPI)" |
2260 |
-HOMEPAGE="http://www.open-mpi.org" |
2261 |
-SRC_URI="http://www.open-mpi.org/software/ompi/v$(get_version_component_range 1-2)/downloads/${MY_P}.tar.bz2" |
2262 |
-LICENSE="BSD" |
2263 |
-SLOT="0" |
2264 |
-KEYWORDS="~amd64 ~x86 ~amd64-linux" |
2265 |
-IUSE="cma cuda +cxx elibc_FreeBSD fortran heterogeneous ipv6 java mpi-threads numa romio threads vt |
2266 |
- ${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}" |
2267 |
- |
2268 |
-REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs ) |
2269 |
- openmpi_rm_pbs? ( !openmpi_rm_slurm ) |
2270 |
- openmpi_fabrics_psm? ( openmpi_fabrics_ofed ) |
2271 |
- openmpi_ofed_features_control-hdr-padding? ( openmpi_fabrics_ofed ) |
2272 |
- openmpi_ofed_features_connectx-xrc? ( openmpi_fabrics_ofed ) |
2273 |
- openmpi_ofed_features_udcm? ( openmpi_fabrics_ofed ) |
2274 |
- openmpi_ofed_features_rdmacm? ( openmpi_fabrics_ofed ) |
2275 |
- openmpi_ofed_features_dynamic-sl? ( openmpi_fabrics_ofed ) |
2276 |
- openmpi_ofed_features_failover? ( openmpi_fabrics_ofed )" |
2277 |
- |
2278 |
-MPI_UNCLASSED_DEP_STR=" |
2279 |
- !sys-cluster/pmix |
2280 |
- vt? ( |
2281 |
- !dev-libs/libotf |
2282 |
- !app-text/lcdf-typetools |
2283 |
- )" |
2284 |
- |
2285 |
-CDEPEND=" |
2286 |
- >=dev-libs/libevent-2.0.21[${MULTILIB_USEDEP}] |
2287 |
- dev-libs/libltdl:0[${MULTILIB_USEDEP}] |
2288 |
- <sys-apps/hwloc-2[${MULTILIB_USEDEP},numa?] |
2289 |
- >=sys-libs/zlib-1.2.8-r1[${MULTILIB_USEDEP}] |
2290 |
- cuda? ( >=dev-util/nvidia-cuda-toolkit-6.5.19-r1 ) |
2291 |
- elibc_FreeBSD? ( dev-libs/libexecinfo ) |
2292 |
- openmpi_fabrics_ofed? ( sys-fabric/ofed:* ) |
2293 |
- openmpi_fabrics_knem? ( sys-cluster/knem ) |
2294 |
- openmpi_fabrics_psm? ( sys-fabric/infinipath-psm:* ) |
2295 |
- openmpi_rm_pbs? ( sys-cluster/torque ) |
2296 |
- openmpi_rm_slurm? ( sys-cluster/slurm ) |
2297 |
- openmpi_ofed_features_rdmacm? ( sys-fabric/librdmacm:* ) |
2298 |
- $(mpi_imp_deplist)" |
2299 |
- |
2300 |
-RDEPEND="${CDEPEND} |
2301 |
- java? ( >=virtual/jre-1.6 )" |
2302 |
- |
2303 |
-DEPEND="${CDEPEND} |
2304 |
- java? ( >=virtual/jdk-1.6 )" |
2305 |
- |
2306 |
-MULTILIB_WRAPPED_HEADERS=( |
2307 |
- /usr/include/mpi.h |
2308 |
- /usr/include/openmpi/ompi/mpi/java/mpiJava.h |
2309 |
-) |
2310 |
- |
2311 |
-pkg_setup() { |
2312 |
- fortran-2_pkg_setup |
2313 |
- java-pkg-opt-2_pkg_setup |
2314 |
- MPI_ESELECT_FILE="eselect.mpi.openmpi" |
2315 |
- |
2316 |
- if use mpi-threads; then |
2317 |
- ewarn |
2318 |
- ewarn "WARNING: use of MPI_THREAD_MULTIPLE is still disabled by" |
2319 |
- ewarn "default and officially unsupported by upstream." |
2320 |
- ewarn "You may stop now and set USE=-mpi-threads" |
2321 |
- ewarn |
2322 |
- fi |
2323 |
- |
2324 |
- elog |
2325 |
- elog "OpenMPI has an overwhelming count of configuration options." |
2326 |
- elog "Don't forget the EXTRA_ECONF environment variable can let you" |
2327 |
- elog "specify configure options if you find them necessary." |
2328 |
- elog |
2329 |
-} |
2330 |
- |
2331 |
-src_prepare() { |
2332 |
- default |
2333 |
- |
2334 |
- # Necessary for scalibility, see |
2335 |
- # http://www.open-mpi.org/community/lists/users/2008/09/6514.php |
2336 |
- if use threads; then |
2337 |
- echo 'oob_tcp_listen_mode = listen_thread' \ |
2338 |
- >> opal/etc/openmpi-mca-params.conf || die |
2339 |
- fi |
2340 |
-} |
2341 |
- |
2342 |
-multilib_src_configure() { |
2343 |
- if use java; then |
2344 |
- # We must always build with the right -source and -target |
2345 |
- # flags. Passing flags to javac isn't explicitly supported here |
2346 |
- # but we can cheat by overriding the configure test for javac. |
2347 |
- export ac_cv_path_JAVAC="$(java-pkg_get-javac) $(java-pkg_javac-args)" |
2348 |
- fi |
2349 |
- |
2350 |
- ECONF_SOURCE=${S} econf $(mpi_econf_args) \ |
2351 |
- --sysconfdir="${EPREFIX}/etc/${PN}" \ |
2352 |
- --enable-pretty-print-stacktrace \ |
2353 |
- --enable-orterun-prefix-by-default \ |
2354 |
- --with-hwloc="${EPREFIX}/usr" \ |
2355 |
- --with-libltdl="${EPREFIX}/usr" \ |
2356 |
- --enable-mpi-fortran=$(usex fortran all no) \ |
2357 |
- $(usex !vt --enable-contrib-no-build=vt "") \ |
2358 |
- $(use_enable cxx mpi-cxx) \ |
2359 |
- $(use_with cma) \ |
2360 |
- $(use_with cuda cuda "${EPREFIX}"/opt/cuda) \ |
2361 |
- $(use_enable romio io-romio) \ |
2362 |
- $(use_enable heterogeneous) \ |
2363 |
- $(use_enable ipv6) \ |
2364 |
- $(multilib_native_use_enable java) \ |
2365 |
- $(multilib_native_use_enable java mpi-java) \ |
2366 |
- $(multilib_native_use_enable mpi-threads mpi-thread-multiple) \ |
2367 |
- $(multilib_native_use_with openmpi_fabrics_ofed verbs "${EPREFIX}"/usr) \ |
2368 |
- $(multilib_native_use_with openmpi_fabrics_knem knem "${EPREFIX}"/usr) \ |
2369 |
- $(multilib_native_use_with openmpi_fabrics_psm psm "${EPREFIX}"/usr) \ |
2370 |
- $(multilib_native_use_enable openmpi_ofed_features_control-hdr-padding openib-control-hdr-padding) \ |
2371 |
- $(multilib_native_use_enable openmpi_ofed_features_connectx-xrc openib-connectx-xrc) \ |
2372 |
- $(multilib_native_use_enable openmpi_ofed_features_rdmacm openib-rdmacm) \ |
2373 |
- $(multilib_native_use_enable openmpi_ofed_features_udcm openib-udcm) \ |
2374 |
- $(multilib_native_use_enable openmpi_ofed_features_dynamic-sl openib-dynamic-sl) \ |
2375 |
- $(multilib_native_use_enable openmpi_ofed_features_failover btl-openib-failover) \ |
2376 |
- $(multilib_native_use_with openmpi_rm_pbs tm) \ |
2377 |
- $(multilib_native_use_with openmpi_rm_slurm slurm) |
2378 |
-} |
2379 |
- |
2380 |
-multilib_src_test() { |
2381 |
- # Doesn't work with the default src_test as the dry run (-n) fails. |
2382 |
- emake -j1 check |
2383 |
-} |
2384 |
- |
2385 |
-multilib_src_install() { |
2386 |
- default |
2387 |
- |
2388 |
- # fortran header cannot be wrapped (bug #540508), workaround part 1 |
2389 |
- if multilib_is_native_abi && use fortran; then |
2390 |
- mkdir "${T}"/fortran || die |
2391 |
- mv "${ED}"/$(mpi_root)/usr/include/mpif* "${T}"/fortran || die |
2392 |
- else |
2393 |
- # some fortran files get installed unconditionally |
2394 |
- rm "${ED}"/$(mpi_root)/usr/include/mpif* "${ED}"usr/bin/mpif* || die |
2395 |
- fi |
2396 |
-} |
2397 |
- |
2398 |
-multilib_src_install_all() { |
2399 |
- # From USE=vt see #359917 |
2400 |
- rm -rf "${ED}"/$(mpi_root)/usr/share/libtool &> /dev/null |
2401 |
- |
2402 |
- # fortran header cannot be wrapped (bug #540508), workaround part 2 |
2403 |
- if use fortran; then |
2404 |
- mv "${T}"/fortran/mpif* "${ED}"/$(mpi_root)/usr/include || die |
2405 |
- fi |
2406 |
- |
2407 |
- # Avoid collisions with libevent |
2408 |
- rm -rf "${ED}"/$(mpi_root)/usr/include/event2 &> /dev/null || die |
2409 |
- |
2410 |
- # Remove la files, no static libs are installed and we have pkg-config |
2411 |
- find "${ED}" -name '*.la' -delete || die |
2412 |
- |
2413 |
- if use java; then |
2414 |
- local mpi_jar="${ED}"/$(mpi_root)/usr/$(get_libdir)/mpi.jar |
2415 |
- java-pkg_dojar "${mpi_jar}" |
2416 |
- # We don't want to install the jar file twice |
2417 |
- # so let's clean after ourselves. |
2418 |
- rm "${mpi_jar}" || die |
2419 |
- fi |
2420 |
- |
2421 |
- mpi_dodoc README AUTHORS NEWS VERSION |
2422 |
- mpi_imp_add_eselect |
2423 |
-} |
2424 |
|
2425 |
diff --git a/sys-cluster/openmpi/openmpi-1.8.8.ebuild b/sys-cluster/openmpi/openmpi-1.8.8.ebuild |
2426 |
deleted file mode 100644 |
2427 |
index b7fa7fabd..000000000 |
2428 |
--- a/sys-cluster/openmpi/openmpi-1.8.8.ebuild |
2429 |
+++ /dev/null |
2430 |
@@ -1,180 +0,0 @@ |
2431 |
-# Copyright 1999-2018 Gentoo Foundation |
2432 |
-# Distributed under the terms of the GNU General Public License v2 |
2433 |
- |
2434 |
-EAPI=5 |
2435 |
- |
2436 |
-FORTRAN_NEEDED=fortran |
2437 |
- |
2438 |
-inherit cuda eutils flag-o-matic fortran-2 java-pkg-opt-2 multilib mpi toolchain-funcs versionator |
2439 |
- |
2440 |
-MY_P=${P/-mpi} |
2441 |
-S=${WORKDIR}/${MY_P} |
2442 |
- |
2443 |
-IUSE_OPENMPI_FABRICS=" |
2444 |
- openmpi_fabrics_ofed |
2445 |
- openmpi_fabrics_knem |
2446 |
- openmpi_fabrics_open-mx |
2447 |
- openmpi_fabrics_psm" |
2448 |
- |
2449 |
-IUSE_OPENMPI_RM=" |
2450 |
- openmpi_rm_pbs |
2451 |
- openmpi_rm_slurm" |
2452 |
- |
2453 |
-IUSE_OPENMPI_OFED_FEATURES=" |
2454 |
- openmpi_ofed_features_control-hdr-padding |
2455 |
- openmpi_ofed_features_connectx-xrc |
2456 |
- openmpi_ofed_features_udcm |
2457 |
- openmpi_ofed_features_rdmacm |
2458 |
- openmpi_ofed_features_dynamic-sl |
2459 |
- openmpi_ofed_features_failover" |
2460 |
- |
2461 |
-DESCRIPTION="A high-performance message passing library (MPI)" |
2462 |
-HOMEPAGE="http://www.open-mpi.org" |
2463 |
-SRC_URI="http://www.open-mpi.org/software/ompi/v$(get_version_component_range 1-2)/downloads/${MY_P}.tar.bz2" |
2464 |
-LICENSE="BSD" |
2465 |
-SLOT="0" |
2466 |
-KEYWORDS="~amd64 ~x86 ~amd64-linux" |
2467 |
-IUSE="cma cuda +cxx elibc_FreeBSD fortran heterogeneous ipv6 java mpi-threads numa romio threads vt |
2468 |
- ${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}" |
2469 |
- |
2470 |
-REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs ) |
2471 |
- openmpi_rm_pbs? ( !openmpi_rm_slurm ) |
2472 |
- openmpi_fabrics_psm? ( openmpi_fabrics_ofed ) |
2473 |
- openmpi_ofed_features_control-hdr-padding? ( openmpi_fabrics_ofed ) |
2474 |
- openmpi_ofed_features_connectx-xrc? ( openmpi_fabrics_ofed ) |
2475 |
- openmpi_ofed_features_udcm? ( openmpi_fabrics_ofed ) |
2476 |
- openmpi_ofed_features_rdmacm? ( openmpi_fabrics_ofed ) |
2477 |
- openmpi_ofed_features_dynamic-sl? ( openmpi_fabrics_ofed ) |
2478 |
- openmpi_ofed_features_failover? ( openmpi_fabrics_ofed )" |
2479 |
- |
2480 |
-MPI_UNCLASSED_DEP_STR=" |
2481 |
- !sys-cluster/pmix |
2482 |
- vt? ( |
2483 |
- !dev-libs/libotf |
2484 |
- !app-text/lcdf-typetools |
2485 |
- )" |
2486 |
- |
2487 |
-RDEPEND=" |
2488 |
- dev-libs/libevent |
2489 |
- dev-libs/libltdl:0 |
2490 |
- <sys-apps/hwloc-2[numa?] |
2491 |
- sys-libs/zlib |
2492 |
- cuda? ( dev-util/nvidia-cuda-toolkit ) |
2493 |
- elibc_FreeBSD? ( dev-libs/libexecinfo ) |
2494 |
- java? ( >=virtual/jre-1.6:* ) |
2495 |
- openmpi_fabrics_ofed? ( sys-fabric/ofed:* ) |
2496 |
- openmpi_fabrics_knem? ( sys-cluster/knem ) |
2497 |
- openmpi_fabrics_open-mx? ( sys-cluster/open-mx ) |
2498 |
- openmpi_fabrics_psm? ( sys-fabric/infinipath-psm:* ) |
2499 |
- openmpi_rm_pbs? ( sys-cluster/torque ) |
2500 |
- openmpi_rm_slurm? ( sys-cluster/slurm ) |
2501 |
- openmpi_ofed_features_rdmacm? ( sys-fabric/librdmacm:* ) |
2502 |
- $(mpi_imp_deplist)" |
2503 |
-DEPEND="${RDEPEND} |
2504 |
- java? ( >=virtual/jdk-1.6 )" |
2505 |
- |
2506 |
-pkg_setup() { |
2507 |
- fortran-2_pkg_setup |
2508 |
- java-pkg-opt-2_pkg_setup |
2509 |
- MPI_ESELECT_FILE="eselect.mpi.openmpi" |
2510 |
- |
2511 |
- if use mpi-threads; then |
2512 |
- echo |
2513 |
- ewarn "WARNING: use of MPI_THREAD_MULTIPLE is still disabled by" |
2514 |
- ewarn "default and officially unsupported by upstream." |
2515 |
- ewarn "You may stop now and set USE=-mpi-threads" |
2516 |
- echo |
2517 |
- fi |
2518 |
- |
2519 |
- echo |
2520 |
- elog "OpenMPI has an overwhelming count of configuration options." |
2521 |
- elog "Don't forget the EXTRA_ECONF environment variable can let you" |
2522 |
- elog "specify configure options if you find them necessary." |
2523 |
- echo |
2524 |
-} |
2525 |
- |
2526 |
-src_prepare() { |
2527 |
- # Necessary for scalibility, see |
2528 |
- # http://www.open-mpi.org/community/lists/users/2008/09/6514.php |
2529 |
- if use threads; then |
2530 |
- echo 'oob_tcp_listen_mode = listen_thread' \ |
2531 |
- >> opal/etc/openmpi-mca-params.conf |
2532 |
- fi |
2533 |
-} |
2534 |
- |
2535 |
-src_configure() { |
2536 |
- local myconf=( |
2537 |
- --sysconfdir="${EPREFIX}/etc/${PN}" |
2538 |
- --enable-pretty-print-stacktrace |
2539 |
- --enable-orterun-prefix-by-default |
2540 |
- --with-hwloc="${EPREFIX}/usr" |
2541 |
- --with-libltdl="${EPREFIX}/usr" |
2542 |
- ) |
2543 |
- |
2544 |
- if use fortran; then |
2545 |
- myconf+=(--enable-mpi-fortran=all) |
2546 |
- else |
2547 |
- myconf+=(--enable-mpi-fortran=no) |
2548 |
- fi |
2549 |
- |
2550 |
- if use java; then |
2551 |
- # We must always build with the right -source and -target |
2552 |
- # flags. Passing flags to javac isn't explicitly supported here |
2553 |
- # but we can cheat by overriding the configure test for javac. |
2554 |
- export ac_cv_path_JAVAC="$(java-pkg_get-javac) $(java-pkg_javac-args)" |
2555 |
- fi |
2556 |
- |
2557 |
- ! use vt && myconf+=(--enable-contrib-no-build=vt) |
2558 |
- |
2559 |
- econf $(mpi_econf_args) "${myconf[@]}" \ |
2560 |
- $(use_enable cxx mpi-cxx) \ |
2561 |
- $(use_with cma) \ |
2562 |
- $(use_with cuda cuda "${EPREFIX}"/opt/cuda) \ |
2563 |
- $(use_enable romio io-romio) \ |
2564 |
- $(use_enable heterogeneous) \ |
2565 |
- $(use_enable ipv6) \ |
2566 |
- $(use_enable java) \ |
2567 |
- $(use_enable java mpi-java) \ |
2568 |
- $(use_enable mpi-threads mpi-thread-multiple) \ |
2569 |
- $(use_with openmpi_fabrics_ofed verbs "${EPREFIX}"/usr) \ |
2570 |
- $(use_with openmpi_fabrics_knem knem "${EPREFIX}"/usr) \ |
2571 |
- $(use_with openmpi_fabrics_open-mx mx "${EPREFIX}"/usr) \ |
2572 |
- $(use_with openmpi_fabrics_psm psm "${EPREFIX}"/usr) \ |
2573 |
- $(use_enable openmpi_ofed_features_control-hdr-padding openib-control-hdr-padding) \ |
2574 |
- $(use_enable openmpi_ofed_features_connectx-xrc openib-connectx-xrc) \ |
2575 |
- $(use_enable openmpi_ofed_features_rdmacm openib-rdmacm) \ |
2576 |
- $(use_enable openmpi_ofed_features_udcm openib-udcm) \ |
2577 |
- $(use_enable openmpi_ofed_features_dynamic-sl openib-dynamic-sl) \ |
2578 |
- $(use_enable openmpi_ofed_features_failover btl-openib-failover) \ |
2579 |
- $(use_with openmpi_rm_pbs tm) \ |
2580 |
- $(use_with openmpi_rm_slurm slurm) |
2581 |
-} |
2582 |
- |
2583 |
-src_install () { |
2584 |
- default |
2585 |
- |
2586 |
- # From USE=vt see #359917 |
2587 |
- rm "${ED}"/$(mpi_root)/usr/share/libtool &> /dev/null |
2588 |
- |
2589 |
- # Avoid collisions with libevent |
2590 |
- rm -rf "${ED}"/$(mpi_root)/usr/include/event2 &> /dev/null |
2591 |
- |
2592 |
- # Remove la files, no static libs are installed and we have pkg-config |
2593 |
- find "${ED}"/$(mpi_root)/usr/$(get_libdir)/ -type f -name '*.la' -delete |
2594 |
- |
2595 |
- if use java; then |
2596 |
- local mpi_jar="${ED}"/$(mpi_root)/usr/$(get_libdir)/mpi.jar |
2597 |
- java-pkg_dojar "${mpi_jar}" |
2598 |
- # We don't want to install the jar file twice |
2599 |
- # so let's clean after ourselves. |
2600 |
- rm "${mpi_jar}" || die |
2601 |
- fi |
2602 |
- |
2603 |
- mpi_dodoc README AUTHORS NEWS VERSION |
2604 |
- mpi_imp_add_eselect |
2605 |
-} |
2606 |
- |
2607 |
-src_test() { |
2608 |
- # Doesn't work with the default src_test as the dry run (-n) fails. |
2609 |
- emake -j1 check |
2610 |
-} |
2611 |
|
2612 |
diff --git a/sys-cluster/openmpi/openmpi-2.0.4.ebuild b/sys-cluster/openmpi/openmpi-2.0.4.ebuild |
2613 |
deleted file mode 100644 |
2614 |
index bfd34c9b0..000000000 |
2615 |
--- a/sys-cluster/openmpi/openmpi-2.0.4.ebuild |
2616 |
+++ /dev/null |
2617 |
@@ -1,177 +0,0 @@ |
2618 |
-# Copyright 1999-2018 Gentoo Foundation |
2619 |
-# Distributed under the terms of the GNU General Public License v2 |
2620 |
- |
2621 |
-EAPI=6 |
2622 |
- |
2623 |
-FORTRAN_NEEDED=fortran |
2624 |
- |
2625 |
-inherit cuda flag-o-matic fortran-2 java-pkg-opt-2 toolchain-funcs versionator multilib-minimal mpi |
2626 |
- |
2627 |
-MY_P=${P/-mpi} |
2628 |
-S=${WORKDIR}/${MY_P} |
2629 |
- |
2630 |
-IUSE_OPENMPI_FABRICS=" |
2631 |
- openmpi_fabrics_ofed |
2632 |
- openmpi_fabrics_knem |
2633 |
- openmpi_fabrics_psm" |
2634 |
- |
2635 |
-IUSE_OPENMPI_RM=" |
2636 |
- openmpi_rm_pbs |
2637 |
- openmpi_rm_slurm" |
2638 |
- |
2639 |
-IUSE_OPENMPI_OFED_FEATURES=" |
2640 |
- openmpi_ofed_features_control-hdr-padding |
2641 |
- openmpi_ofed_features_connectx-xrc |
2642 |
- openmpi_ofed_features_udcm |
2643 |
- openmpi_ofed_features_rdmacm |
2644 |
- openmpi_ofed_features_dynamic-sl |
2645 |
- openmpi_ofed_features_failover" |
2646 |
- |
2647 |
-DESCRIPTION="A high-performance message passing library (MPI)" |
2648 |
-HOMEPAGE="http://www.open-mpi.org" |
2649 |
-SRC_URI="http://www.open-mpi.org/software/ompi/v$(get_version_component_range 1-2)/downloads/${MY_P}.tar.bz2" |
2650 |
-LICENSE="BSD" |
2651 |
-SLOT="0" |
2652 |
-KEYWORDS="~amd64 ~x86 ~amd64-linux" |
2653 |
-IUSE="cma cuda cxx elibc_FreeBSD fortran heterogeneous ipv6 java mpi-threads numa romio threads |
2654 |
- ${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}" |
2655 |
- |
2656 |
-REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs ) |
2657 |
- openmpi_rm_pbs? ( !openmpi_rm_slurm ) |
2658 |
- openmpi_fabrics_psm? ( openmpi_fabrics_ofed ) |
2659 |
- openmpi_ofed_features_control-hdr-padding? ( openmpi_fabrics_ofed ) |
2660 |
- openmpi_ofed_features_connectx-xrc? ( openmpi_fabrics_ofed ) |
2661 |
- openmpi_ofed_features_udcm? ( openmpi_fabrics_ofed ) |
2662 |
- openmpi_ofed_features_rdmacm? ( openmpi_fabrics_ofed ) |
2663 |
- openmpi_ofed_features_dynamic-sl? ( openmpi_fabrics_ofed ) |
2664 |
- openmpi_ofed_features_failover? ( openmpi_fabrics_ofed )" |
2665 |
- |
2666 |
-MPI_UNCLASSED_DEP_STR=" |
2667 |
- !sys-cluster/pmix |
2668 |
-" |
2669 |
- |
2670 |
-CDEPEND=" |
2671 |
- >=dev-libs/libevent-2.0.22[${MULTILIB_USEDEP},threads] |
2672 |
- dev-libs/libltdl:0[${MULTILIB_USEDEP}] |
2673 |
- <sys-apps/hwloc-2[${MULTILIB_USEDEP},numa?] |
2674 |
- >=sys-libs/zlib-1.2.8-r1[${MULTILIB_USEDEP}] |
2675 |
- cuda? ( >=dev-util/nvidia-cuda-toolkit-6.5.19-r1 ) |
2676 |
- elibc_FreeBSD? ( dev-libs/libexecinfo ) |
2677 |
- openmpi_fabrics_ofed? ( sys-fabric/ofed:* ) |
2678 |
- openmpi_fabrics_knem? ( sys-cluster/knem ) |
2679 |
- openmpi_fabrics_psm? ( sys-fabric/infinipath-psm:* ) |
2680 |
- openmpi_rm_pbs? ( sys-cluster/torque ) |
2681 |
- openmpi_rm_slurm? ( sys-cluster/slurm ) |
2682 |
- openmpi_ofed_features_rdmacm? ( sys-fabric/librdmacm:* ) |
2683 |
- $(mpi_imp_deplist)" |
2684 |
- |
2685 |
-RDEPEND="${CDEPEND} |
2686 |
- java? ( >=virtual/jre-1.6 )" |
2687 |
- |
2688 |
-DEPEND="${CDEPEND} |
2689 |
- java? ( >=virtual/jdk-1.6 )" |
2690 |
- |
2691 |
-MULTILIB_WRAPPED_HEADERS=( |
2692 |
- /usr/include/mpi.h |
2693 |
- /usr/include/openmpi/ompi/mpi/java/mpiJava.h |
2694 |
-) |
2695 |
- |
2696 |
-pkg_setup() { |
2697 |
- fortran-2_pkg_setup |
2698 |
- java-pkg-opt-2_pkg_setup |
2699 |
- MPI_ESELECT_FILE="eselect.mpi.openmpi" |
2700 |
- |
2701 |
- elog |
2702 |
- elog "OpenMPI has an overwhelming count of configuration options." |
2703 |
- elog "Don't forget the EXTRA_ECONF environment variable can let you" |
2704 |
- elog "specify configure options if you find them necessary." |
2705 |
- elog |
2706 |
-} |
2707 |
- |
2708 |
-src_prepare() { |
2709 |
- default |
2710 |
- |
2711 |
- # Necessary for scalibility, see |
2712 |
- # http://www.open-mpi.org/community/lists/users/2008/09/6514.php |
2713 |
- if use threads; then |
2714 |
- echo 'oob_tcp_listen_mode = listen_thread' \ |
2715 |
- >> opal/etc/openmpi-mca-params.conf || die |
2716 |
- fi |
2717 |
-} |
2718 |
- |
2719 |
-multilib_src_configure() { |
2720 |
- if use java; then |
2721 |
- # We must always build with the right -source and -target |
2722 |
- # flags. Passing flags to javac isn't explicitly supported here |
2723 |
- # but we can cheat by overriding the configure test for javac. |
2724 |
- export ac_cv_path_JAVAC="$(java-pkg_get-javac) $(java-pkg_javac-args)" |
2725 |
- fi |
2726 |
- |
2727 |
- ECONF_SOURCE=${S} econf $(mpi_econf_args) \ |
2728 |
- --sysconfdir="${EPREFIX}/etc/${PN}" \ |
2729 |
- --enable-pretty-print-stacktrace \ |
2730 |
- --enable-orterun-prefix-by-default \ |
2731 |
- --with-hwloc="${EPREFIX}/usr" \ |
2732 |
- --with-libltdl="${EPREFIX}/usr" \ |
2733 |
- --with-libevent="${EPREFIX}/usr" \ |
2734 |
- --enable-mpi-fortran=$(usex fortran all no) \ |
2735 |
- $(use_enable cxx mpi-cxx) \ |
2736 |
- $(use_with cma) \ |
2737 |
- $(use_with cuda cuda "${EPREFIX}"/opt/cuda) \ |
2738 |
- $(use_enable romio io-romio) \ |
2739 |
- $(use_enable heterogeneous) \ |
2740 |
- $(use_enable ipv6) \ |
2741 |
- $(multilib_native_use_enable java) \ |
2742 |
- $(multilib_native_use_enable java mpi-java) \ |
2743 |
- $(multilib_native_use_enable mpi-threads mpi-thread-multiple) \ |
2744 |
- $(multilib_native_use_with openmpi_fabrics_ofed verbs "${EPREFIX}"/usr) \ |
2745 |
- $(multilib_native_use_with openmpi_fabrics_knem knem "${EPREFIX}"/usr) \ |
2746 |
- $(multilib_native_use_with openmpi_fabrics_psm psm "${EPREFIX}"/usr) \ |
2747 |
- $(multilib_native_use_enable openmpi_ofed_features_control-hdr-padding openib-control-hdr-padding) \ |
2748 |
- $(multilib_native_use_enable openmpi_ofed_features_connectx-xrc openib-connectx-xrc) \ |
2749 |
- $(multilib_native_use_enable openmpi_ofed_features_rdmacm openib-rdmacm) \ |
2750 |
- $(multilib_native_use_enable openmpi_ofed_features_udcm openib-udcm) \ |
2751 |
- $(multilib_native_use_enable openmpi_ofed_features_dynamic-sl openib-dynamic-sl) \ |
2752 |
- $(multilib_native_use_enable openmpi_ofed_features_failover btl-openib-failover) \ |
2753 |
- $(multilib_native_use_with openmpi_rm_pbs tm) \ |
2754 |
- $(multilib_native_use_with openmpi_rm_slurm slurm) |
2755 |
-} |
2756 |
- |
2757 |
-multilib_src_test() { |
2758 |
- # Doesn't work with the default src_test as the dry run (-n) fails. |
2759 |
- emake -j1 check |
2760 |
-} |
2761 |
- |
2762 |
-multilib_src_install() { |
2763 |
- default |
2764 |
- |
2765 |
- # fortran header cannot be wrapped (bug #540508), workaround part 1 |
2766 |
- if multilib_is_native_abi && use fortran; then |
2767 |
- mkdir "${T}"/fortran || die |
2768 |
- mv "${ED}"/$(mpi_root)/usr/include/mpif* "${T}"/fortran || die |
2769 |
- else |
2770 |
- # some fortran files get installed unconditionally |
2771 |
- rm "${ED}"/$(mpi_root)/usr/include/mpif* "${ED}"usr/bin/mpif* || die |
2772 |
- fi |
2773 |
-} |
2774 |
- |
2775 |
-multilib_src_install_all() { |
2776 |
- # fortran header cannot be wrapped (bug #540508), workaround part 2 |
2777 |
- if use fortran; then |
2778 |
- mv "${T}"/fortran/mpif* "${ED}"/$(mpi_root)/usr/include || die |
2779 |
- fi |
2780 |
- |
2781 |
- # Remove la files, no static libs are installed and we have pkg-config |
2782 |
- find "${ED}" -name '*.la' -delete || die |
2783 |
- |
2784 |
- if use java; then |
2785 |
- local mpi_jar="${ED}"/$(mpi_root)/usr/$(get_libdir)/mpi.jar |
2786 |
- java-pkg_dojar "${mpi_jar}" |
2787 |
- # We don't want to install the jar file twice |
2788 |
- # so let's clean after ourselves. |
2789 |
- rm "${mpi_jar}" || die |
2790 |
- fi |
2791 |
- |
2792 |
- mpi_dodoc README AUTHORS NEWS VERSION |
2793 |
- mpi_imp_add_eselect |
2794 |
-} |
2795 |
|
2796 |
diff --git a/sys-cluster/openmpi/openmpi-2.1.6.ebuild b/sys-cluster/openmpi/openmpi-2.1.6.ebuild |
2797 |
deleted file mode 100644 |
2798 |
index f616b2844..000000000 |
2799 |
--- a/sys-cluster/openmpi/openmpi-2.1.6.ebuild |
2800 |
+++ /dev/null |
2801 |
@@ -1,176 +0,0 @@ |
2802 |
-# Copyright 1999-2019 Gentoo Authors |
2803 |
-# Distributed under the terms of the GNU General Public License v2 |
2804 |
- |
2805 |
-EAPI=6 |
2806 |
- |
2807 |
-FORTRAN_NEEDED=fortran |
2808 |
- |
2809 |
-inherit cuda flag-o-matic fortran-2 java-pkg-opt-2 toolchain-funcs versionator multilib-minimal mpi |
2810 |
- |
2811 |
-MY_P=${P/-mpi} |
2812 |
-S=${WORKDIR}/${MY_P} |
2813 |
- |
2814 |
-IUSE_OPENMPI_FABRICS=" |
2815 |
- openmpi_fabrics_ofed |
2816 |
- openmpi_fabrics_knem |
2817 |
- openmpi_fabrics_psm" |
2818 |
- |
2819 |
-IUSE_OPENMPI_RM=" |
2820 |
- openmpi_rm_pbs |
2821 |
- openmpi_rm_slurm" |
2822 |
- |
2823 |
-IUSE_OPENMPI_OFED_FEATURES=" |
2824 |
- openmpi_ofed_features_control-hdr-padding |
2825 |
- openmpi_ofed_features_udcm |
2826 |
- openmpi_ofed_features_rdmacm |
2827 |
- openmpi_ofed_features_dynamic-sl" |
2828 |
- |
2829 |
-DESCRIPTION="A high-performance message passing library (MPI)" |
2830 |
-HOMEPAGE="http://www.open-mpi.org" |
2831 |
-SRC_URI="http://www.open-mpi.org/software/ompi/v$(get_version_component_range 1-2)/downloads/${MY_P}.tar.bz2" |
2832 |
-LICENSE="BSD" |
2833 |
-SLOT="0" |
2834 |
-KEYWORDS="~amd64 ~x86 ~amd64-linux" |
2835 |
-IUSE="cma cuda cxx elibc_FreeBSD fortran heterogeneous ipv6 java mpi-threads numa romio threads |
2836 |
- ${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}" |
2837 |
- |
2838 |
-REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs ) |
2839 |
- openmpi_rm_pbs? ( !openmpi_rm_slurm ) |
2840 |
- openmpi_fabrics_psm? ( openmpi_fabrics_ofed ) |
2841 |
- openmpi_ofed_features_control-hdr-padding? ( openmpi_fabrics_ofed ) |
2842 |
- openmpi_ofed_features_udcm? ( openmpi_fabrics_ofed ) |
2843 |
- openmpi_ofed_features_rdmacm? ( openmpi_fabrics_ofed ) |
2844 |
- openmpi_ofed_features_dynamic-sl? ( openmpi_fabrics_ofed )" |
2845 |
- |
2846 |
-MPI_UNCLASSED_DEP_STR=" |
2847 |
- !sys-cluster/pmix |
2848 |
-" |
2849 |
- |
2850 |
-CDEPEND=" |
2851 |
- >=dev-libs/libevent-2.0.22[${MULTILIB_USEDEP},threads] |
2852 |
- dev-libs/libltdl:0[${MULTILIB_USEDEP}] |
2853 |
- <sys-apps/hwloc-2[${MULTILIB_USEDEP},numa?] |
2854 |
- >=sys-libs/zlib-1.2.8-r1[${MULTILIB_USEDEP}] |
2855 |
- cuda? ( >=dev-util/nvidia-cuda-toolkit-6.5.19-r1 ) |
2856 |
- elibc_FreeBSD? ( dev-libs/libexecinfo ) |
2857 |
- openmpi_fabrics_ofed? ( sys-fabric/ofed:* ) |
2858 |
- openmpi_fabrics_knem? ( sys-cluster/knem ) |
2859 |
- openmpi_fabrics_psm? ( sys-fabric/infinipath-psm:* ) |
2860 |
- openmpi_rm_pbs? ( sys-cluster/torque ) |
2861 |
- openmpi_rm_slurm? ( sys-cluster/slurm ) |
2862 |
- openmpi_ofed_features_rdmacm? ( sys-fabric/librdmacm:* ) |
2863 |
- $(mpi_imp_deplist)" |
2864 |
- |
2865 |
-RDEPEND="${CDEPEND} |
2866 |
- java? ( >=virtual/jre-1.6 )" |
2867 |
- |
2868 |
-DEPEND="${CDEPEND} |
2869 |
- java? ( >=virtual/jdk-1.6 )" |
2870 |
- |
2871 |
-MULTILIB_WRAPPED_HEADERS=( |
2872 |
- /usr/include/mpi.h |
2873 |
- /usr/include/openmpi/ompi/mpi/java/mpiJava.h |
2874 |
-) |
2875 |
- |
2876 |
-pkg_setup() { |
2877 |
- fortran-2_pkg_setup |
2878 |
- java-pkg-opt-2_pkg_setup |
2879 |
- MPI_ESELECT_FILE="eselect.mpi.openmpi" |
2880 |
- |
2881 |
- elog |
2882 |
- elog "OpenMPI has an overwhelming count of configuration options." |
2883 |
- elog "Don't forget the EXTRA_ECONF environment variable can let you" |
2884 |
- elog "specify configure options if you find them necessary." |
2885 |
- elog |
2886 |
-} |
2887 |
- |
2888 |
-src_prepare() { |
2889 |
- default |
2890 |
- |
2891 |
- # Necessary for scalibility, see |
2892 |
- # http://www.open-mpi.org/community/lists/users/2008/09/6514.php |
2893 |
- if use threads; then |
2894 |
- echo 'oob_tcp_listen_mode = listen_thread' \ |
2895 |
- >> opal/etc/openmpi-mca-params.conf || die |
2896 |
- fi |
2897 |
-} |
2898 |
- |
2899 |
-multilib_src_configure() { |
2900 |
- if use java; then |
2901 |
- # We must always build with the right -source and -target |
2902 |
- # flags. Passing flags to javac isn't explicitly supported here |
2903 |
- # but we can cheat by overriding the configure test for javac. |
2904 |
- export ac_cv_path_JAVAC="$(java-pkg_get-javac) $(java-pkg_javac-args)" |
2905 |
- fi |
2906 |
- |
2907 |
- ECONF_SOURCE=${S} econf $(mpi_econf_args) \ |
2908 |
- --sysconfdir="${EPREFIX}/etc/${PN}" \ |
2909 |
- --enable-pretty-print-stacktrace \ |
2910 |
- --enable-orterun-prefix-by-default \ |
2911 |
- --with-hwloc="${EPREFIX}/usr" \ |
2912 |
- --with-libltdl="${EPREFIX}/usr" \ |
2913 |
- --with-libevent="${EPREFIX}/usr" \ |
2914 |
- --enable-mpi-fortran=$(usex fortran all no) \ |
2915 |
- $(use_enable cxx mpi-cxx) \ |
2916 |
- $(use_with cma) \ |
2917 |
- $(use_with cuda cuda "${EPREFIX}"/opt/cuda) \ |
2918 |
- $(use_enable romio io-romio) \ |
2919 |
- $(use_enable heterogeneous) \ |
2920 |
- $(use_enable ipv6) \ |
2921 |
- $(multilib_native_use_enable java) \ |
2922 |
- $(multilib_native_use_enable java mpi-java) \ |
2923 |
- $(multilib_native_use_enable mpi-threads mpi-thread-multiple) \ |
2924 |
- $(multilib_native_use_with openmpi_fabrics_ofed verbs "${EPREFIX}"/usr) \ |
2925 |
- $(multilib_native_use_with openmpi_fabrics_knem knem "${EPREFIX}"/usr) \ |
2926 |
- $(multilib_native_use_with openmpi_fabrics_psm psm "${EPREFIX}"/usr) \ |
2927 |
- $(multilib_native_use_enable openmpi_ofed_features_control-hdr-padding openib-control-hdr-padding) \ |
2928 |
- $(multilib_native_use_enable openmpi_ofed_features_rdmacm openib-rdmacm) \ |
2929 |
- $(multilib_native_use_enable openmpi_ofed_features_udcm openib-udcm) \ |
2930 |
- $(multilib_native_use_enable openmpi_ofed_features_dynamic-sl openib-dynamic-sl) \ |
2931 |
- $(multilib_native_use_with openmpi_rm_pbs tm) \ |
2932 |
- $(multilib_native_use_with openmpi_rm_slurm slurm) |
2933 |
-} |
2934 |
- |
2935 |
-multilib_src_test() { |
2936 |
- # Doesn't work with the default src_test as the dry run (-n) fails. |
2937 |
- emake -j1 check |
2938 |
-} |
2939 |
- |
2940 |
-multilib_src_install() { |
2941 |
- default |
2942 |
- |
2943 |
- # fortran header cannot be wrapped (bug #540508), workaround part 1 |
2944 |
- if multilib_is_native_abi && use fortran; then |
2945 |
- mkdir "${T}"/fortran || die |
2946 |
- mv "${ED}"/$(mpi_root)/usr/include/mpif* "${T}"/fortran || die |
2947 |
- else |
2948 |
- # some fortran files get installed unconditionally |
2949 |
- rm \ |
2950 |
- "${ED}"/$(mpi_root)/usr/include/mpif* \ |
2951 |
- "${ED}"/$(mpi_root)/usr/bin/mpif* \ |
2952 |
- "${ED}"/$(mpi_root)/usr/bin/oshfort \ |
2953 |
- "${ED}"/$(mpi_root)/usr/bin/shmemfort \ |
2954 |
- || die |
2955 |
- fi |
2956 |
-} |
2957 |
- |
2958 |
-multilib_src_install_all() { |
2959 |
- # fortran header cannot be wrapped (bug #540508), workaround part 2 |
2960 |
- if use fortran; then |
2961 |
- mv "${T}"/fortran/mpif* "${ED}"/$(mpi_root)/usr/include || die |
2962 |
- fi |
2963 |
- |
2964 |
- # Remove la files, no static libs are installed and we have pkg-config |
2965 |
- find "${ED}" -name '*.la' -delete || die |
2966 |
- |
2967 |
- if use java; then |
2968 |
- local mpi_jar="${ED}"/$(mpi_root)/usr/$(get_libdir)/mpi.jar |
2969 |
- java-pkg_dojar "${mpi_jar}" |
2970 |
- # We don't want to install the jar file twice |
2971 |
- # so let's clean after ourselves. |
2972 |
- rm "${mpi_jar}" || die |
2973 |
- fi |
2974 |
- |
2975 |
- mpi_dodoc README AUTHORS NEWS VERSION |
2976 |
- mpi_imp_add_eselect |
2977 |
-} |
2978 |
|
2979 |
diff --git a/sys-cluster/openmpi/openmpi-3.0.4.ebuild b/sys-cluster/openmpi/openmpi-3.0.4.ebuild |
2980 |
deleted file mode 100644 |
2981 |
index bcb60baa5..000000000 |
2982 |
--- a/sys-cluster/openmpi/openmpi-3.0.4.ebuild |
2983 |
+++ /dev/null |
2984 |
@@ -1,173 +0,0 @@ |
2985 |
-# Copyright 1999-2019 Gentoo Authors |
2986 |
-# Distributed under the terms of the GNU General Public License v2 |
2987 |
- |
2988 |
-EAPI=6 |
2989 |
- |
2990 |
-FORTRAN_NEEDED=fortran |
2991 |
- |
2992 |
-inherit cuda flag-o-matic fortran-2 java-pkg-opt-2 toolchain-funcs versionator multilib-minimal mpi |
2993 |
- |
2994 |
-MY_P=${P/-mpi} |
2995 |
-S=${WORKDIR}/${MY_P} |
2996 |
- |
2997 |
-IUSE_OPENMPI_FABRICS=" |
2998 |
- openmpi_fabrics_ofed |
2999 |
- openmpi_fabrics_knem |
3000 |
- openmpi_fabrics_psm" |
3001 |
- |
3002 |
-IUSE_OPENMPI_RM=" |
3003 |
- openmpi_rm_pbs |
3004 |
- openmpi_rm_slurm" |
3005 |
- |
3006 |
-IUSE_OPENMPI_OFED_FEATURES=" |
3007 |
- openmpi_ofed_features_control-hdr-padding |
3008 |
- openmpi_ofed_features_udcm |
3009 |
- openmpi_ofed_features_rdmacm |
3010 |
- openmpi_ofed_features_dynamic-sl" |
3011 |
- |
3012 |
-DESCRIPTION="A high-performance message passing library (MPI)" |
3013 |
-HOMEPAGE="http://www.open-mpi.org" |
3014 |
-SRC_URI="http://www.open-mpi.org/software/ompi/v$(get_version_component_range 1-2)/downloads/${MY_P}.tar.bz2" |
3015 |
-LICENSE="BSD" |
3016 |
-SLOT="0" |
3017 |
-KEYWORDS="~amd64 ~x86 ~amd64-linux" |
3018 |
-IUSE="cma cuda cxx elibc_FreeBSD fortran heterogeneous ipv6 java numa romio |
3019 |
- ${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}" |
3020 |
- |
3021 |
-REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs ) |
3022 |
- openmpi_rm_pbs? ( !openmpi_rm_slurm ) |
3023 |
- openmpi_fabrics_psm? ( openmpi_fabrics_ofed ) |
3024 |
- openmpi_ofed_features_control-hdr-padding? ( openmpi_fabrics_ofed ) |
3025 |
- openmpi_ofed_features_udcm? ( openmpi_fabrics_ofed ) |
3026 |
- openmpi_ofed_features_rdmacm? ( openmpi_fabrics_ofed ) |
3027 |
- openmpi_ofed_features_dynamic-sl? ( openmpi_fabrics_ofed )" |
3028 |
- |
3029 |
-MPI_UNCLASSED_DEP_STR=" |
3030 |
- !sys-cluster/pmix |
3031 |
-" |
3032 |
- |
3033 |
-CDEPEND=" |
3034 |
- >=dev-libs/libevent-2.0.22[${MULTILIB_USEDEP},threads] |
3035 |
- dev-libs/libltdl:0[${MULTILIB_USEDEP}] |
3036 |
- <sys-apps/hwloc-2[${MULTILIB_USEDEP},numa?] |
3037 |
- >=sys-libs/zlib-1.2.8-r1[${MULTILIB_USEDEP}] |
3038 |
- cuda? ( >=dev-util/nvidia-cuda-toolkit-6.5.19-r1 ) |
3039 |
- elibc_FreeBSD? ( dev-libs/libexecinfo ) |
3040 |
- openmpi_fabrics_ofed? ( sys-fabric/ofed:* ) |
3041 |
- openmpi_fabrics_knem? ( sys-cluster/knem ) |
3042 |
- openmpi_fabrics_psm? ( sys-fabric/infinipath-psm:* ) |
3043 |
- openmpi_rm_pbs? ( sys-cluster/torque ) |
3044 |
- openmpi_rm_slurm? ( sys-cluster/slurm ) |
3045 |
- openmpi_ofed_features_rdmacm? ( sys-fabric/librdmacm:* ) |
3046 |
- $(mpi_imp_deplist)" |
3047 |
- |
3048 |
-RDEPEND="${CDEPEND} |
3049 |
- java? ( >=virtual/jre-1.6 )" |
3050 |
- |
3051 |
-DEPEND="${CDEPEND} |
3052 |
- java? ( >=virtual/jdk-1.6 )" |
3053 |
- |
3054 |
-MULTILIB_WRAPPED_HEADERS=( |
3055 |
- /usr/include/mpi.h |
3056 |
- /usr/include/openmpi/ompi/mpi/java/mpiJava.h |
3057 |
-) |
3058 |
- |
3059 |
-pkg_setup() { |
3060 |
- fortran-2_pkg_setup |
3061 |
- java-pkg-opt-2_pkg_setup |
3062 |
- MPI_ESELECT_FILE="eselect.mpi.openmpi" |
3063 |
- |
3064 |
- elog |
3065 |
- elog "OpenMPI has an overwhelming count of configuration options." |
3066 |
- elog "Don't forget the EXTRA_ECONF environment variable can let you" |
3067 |
- elog "specify configure options if you find them necessary." |
3068 |
- elog |
3069 |
-} |
3070 |
- |
3071 |
-src_prepare() { |
3072 |
- default |
3073 |
- |
3074 |
- # Necessary for scalibility, see |
3075 |
- # http://www.open-mpi.org/community/lists/users/2008/09/6514.php |
3076 |
- echo 'oob_tcp_listen_mode = listen_thread' \ |
3077 |
- >> opal/etc/openmpi-mca-params.conf || die |
3078 |
-} |
3079 |
- |
3080 |
-multilib_src_configure() { |
3081 |
- if use java; then |
3082 |
- # We must always build with the right -source and -target |
3083 |
- # flags. Passing flags to javac isn't explicitly supported here |
3084 |
- # but we can cheat by overriding the configure test for javac. |
3085 |
- export ac_cv_path_JAVAC="$(java-pkg_get-javac) $(java-pkg_javac-args)" |
3086 |
- fi |
3087 |
- |
3088 |
- ECONF_SOURCE=${S} econf $(mpi_econf_args) \ |
3089 |
- --sysconfdir="${EPREFIX}/etc/${PN}" \ |
3090 |
- --enable-pretty-print-stacktrace \ |
3091 |
- --enable-orterun-prefix-by-default \ |
3092 |
- --with-hwloc="${EPREFIX}/usr" \ |
3093 |
- --with-libltdl="${EPREFIX}/usr" \ |
3094 |
- --with-libevent="${EPREFIX}/usr" \ |
3095 |
- --enable-mpi-fortran=$(usex fortran all no) \ |
3096 |
- $(use_enable cxx mpi-cxx) \ |
3097 |
- $(use_with cma) \ |
3098 |
- $(use_with cuda cuda "${EPREFIX}"/opt/cuda) \ |
3099 |
- $(use_enable romio io-romio) \ |
3100 |
- $(use_enable heterogeneous) \ |
3101 |
- $(use_enable ipv6) \ |
3102 |
- $(multilib_native_use_enable java) \ |
3103 |
- $(multilib_native_use_enable java mpi-java) \ |
3104 |
- $(multilib_native_use_with openmpi_fabrics_ofed verbs "${EPREFIX}"/usr) \ |
3105 |
- $(multilib_native_use_with openmpi_fabrics_knem knem "${EPREFIX}"/usr) \ |
3106 |
- $(multilib_native_use_with openmpi_fabrics_psm psm "${EPREFIX}"/usr) \ |
3107 |
- $(multilib_native_use_enable openmpi_ofed_features_control-hdr-padding openib-control-hdr-padding) \ |
3108 |
- $(multilib_native_use_enable openmpi_ofed_features_rdmacm openib-rdmacm) \ |
3109 |
- $(multilib_native_use_enable openmpi_ofed_features_udcm openib-udcm) \ |
3110 |
- $(multilib_native_use_enable openmpi_ofed_features_dynamic-sl openib-dynamic-sl) \ |
3111 |
- $(multilib_native_use_with openmpi_rm_pbs tm) \ |
3112 |
- $(multilib_native_use_with openmpi_rm_slurm slurm) |
3113 |
-} |
3114 |
- |
3115 |
-multilib_src_test() { |
3116 |
- # Doesn't work with the default src_test as the dry run (-n) fails. |
3117 |
- emake -j1 check |
3118 |
-} |
3119 |
- |
3120 |
-multilib_src_install() { |
3121 |
- default |
3122 |
- |
3123 |
- # fortran header cannot be wrapped (bug #540508), workaround part 1 |
3124 |
- if multilib_is_native_abi && use fortran; then |
3125 |
- mkdir "${T}"/fortran || die |
3126 |
- mv "${ED}"/$(mpi_root)/usr/include/mpif* "${T}"/fortran || die |
3127 |
- else |
3128 |
- # some fortran files get installed unconditionally |
3129 |
- rm \ |
3130 |
- "${ED}"/$(mpi_root)/usr/include/mpif* \ |
3131 |
- "${ED}"/$(mpi_root)/usr/bin/mpif* \ |
3132 |
- "${ED}"/$(mpi_root)/usr/bin/oshfort \ |
3133 |
- "${ED}"/$(mpi_root)/usr/bin/shmemfort \ |
3134 |
- || die |
3135 |
- fi |
3136 |
-} |
3137 |
- |
3138 |
-multilib_src_install_all() { |
3139 |
- # fortran header cannot be wrapped (bug #540508), workaround part 2 |
3140 |
- if use fortran; then |
3141 |
- mv "${T}"/fortran/mpif* "${ED}"/$(mpi_root)/usr/include || die |
3142 |
- fi |
3143 |
- |
3144 |
- # Remove la files, no static libs are installed and we have pkg-config |
3145 |
- find "${ED}" -name '*.la' -delete || die |
3146 |
- |
3147 |
- if use java; then |
3148 |
- local mpi_jar="${ED}"/$(mpi_root)/usr/$(get_libdir)/mpi.jar |
3149 |
- java-pkg_dojar "${mpi_jar}" |
3150 |
- # We don't want to install the jar file twice |
3151 |
- # so let's clean after ourselves. |
3152 |
- rm "${mpi_jar}" || die |
3153 |
- fi |
3154 |
- |
3155 |
- mpi_dodoc README AUTHORS NEWS VERSION |
3156 |
- mpi_imp_add_eselect |
3157 |
-} |
3158 |
|
3159 |
diff --git a/sys-cluster/openmpi/openmpi-3.1.4.ebuild b/sys-cluster/openmpi/openmpi-3.1.4.ebuild |
3160 |
deleted file mode 100644 |
3161 |
index bcb60baa5..000000000 |
3162 |
--- a/sys-cluster/openmpi/openmpi-3.1.4.ebuild |
3163 |
+++ /dev/null |
3164 |
@@ -1,173 +0,0 @@ |
3165 |
-# Copyright 1999-2019 Gentoo Authors |
3166 |
-# Distributed under the terms of the GNU General Public License v2 |
3167 |
- |
3168 |
-EAPI=6 |
3169 |
- |
3170 |
-FORTRAN_NEEDED=fortran |
3171 |
- |
3172 |
-inherit cuda flag-o-matic fortran-2 java-pkg-opt-2 toolchain-funcs versionator multilib-minimal mpi |
3173 |
- |
3174 |
-MY_P=${P/-mpi} |
3175 |
-S=${WORKDIR}/${MY_P} |
3176 |
- |
3177 |
-IUSE_OPENMPI_FABRICS=" |
3178 |
- openmpi_fabrics_ofed |
3179 |
- openmpi_fabrics_knem |
3180 |
- openmpi_fabrics_psm" |
3181 |
- |
3182 |
-IUSE_OPENMPI_RM=" |
3183 |
- openmpi_rm_pbs |
3184 |
- openmpi_rm_slurm" |
3185 |
- |
3186 |
-IUSE_OPENMPI_OFED_FEATURES=" |
3187 |
- openmpi_ofed_features_control-hdr-padding |
3188 |
- openmpi_ofed_features_udcm |
3189 |
- openmpi_ofed_features_rdmacm |
3190 |
- openmpi_ofed_features_dynamic-sl" |
3191 |
- |
3192 |
-DESCRIPTION="A high-performance message passing library (MPI)" |
3193 |
-HOMEPAGE="http://www.open-mpi.org" |
3194 |
-SRC_URI="http://www.open-mpi.org/software/ompi/v$(get_version_component_range 1-2)/downloads/${MY_P}.tar.bz2" |
3195 |
-LICENSE="BSD" |
3196 |
-SLOT="0" |
3197 |
-KEYWORDS="~amd64 ~x86 ~amd64-linux" |
3198 |
-IUSE="cma cuda cxx elibc_FreeBSD fortran heterogeneous ipv6 java numa romio |
3199 |
- ${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}" |
3200 |
- |
3201 |
-REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs ) |
3202 |
- openmpi_rm_pbs? ( !openmpi_rm_slurm ) |
3203 |
- openmpi_fabrics_psm? ( openmpi_fabrics_ofed ) |
3204 |
- openmpi_ofed_features_control-hdr-padding? ( openmpi_fabrics_ofed ) |
3205 |
- openmpi_ofed_features_udcm? ( openmpi_fabrics_ofed ) |
3206 |
- openmpi_ofed_features_rdmacm? ( openmpi_fabrics_ofed ) |
3207 |
- openmpi_ofed_features_dynamic-sl? ( openmpi_fabrics_ofed )" |
3208 |
- |
3209 |
-MPI_UNCLASSED_DEP_STR=" |
3210 |
- !sys-cluster/pmix |
3211 |
-" |
3212 |
- |
3213 |
-CDEPEND=" |
3214 |
- >=dev-libs/libevent-2.0.22[${MULTILIB_USEDEP},threads] |
3215 |
- dev-libs/libltdl:0[${MULTILIB_USEDEP}] |
3216 |
- <sys-apps/hwloc-2[${MULTILIB_USEDEP},numa?] |
3217 |
- >=sys-libs/zlib-1.2.8-r1[${MULTILIB_USEDEP}] |
3218 |
- cuda? ( >=dev-util/nvidia-cuda-toolkit-6.5.19-r1 ) |
3219 |
- elibc_FreeBSD? ( dev-libs/libexecinfo ) |
3220 |
- openmpi_fabrics_ofed? ( sys-fabric/ofed:* ) |
3221 |
- openmpi_fabrics_knem? ( sys-cluster/knem ) |
3222 |
- openmpi_fabrics_psm? ( sys-fabric/infinipath-psm:* ) |
3223 |
- openmpi_rm_pbs? ( sys-cluster/torque ) |
3224 |
- openmpi_rm_slurm? ( sys-cluster/slurm ) |
3225 |
- openmpi_ofed_features_rdmacm? ( sys-fabric/librdmacm:* ) |
3226 |
- $(mpi_imp_deplist)" |
3227 |
- |
3228 |
-RDEPEND="${CDEPEND} |
3229 |
- java? ( >=virtual/jre-1.6 )" |
3230 |
- |
3231 |
-DEPEND="${CDEPEND} |
3232 |
- java? ( >=virtual/jdk-1.6 )" |
3233 |
- |
3234 |
-MULTILIB_WRAPPED_HEADERS=( |
3235 |
- /usr/include/mpi.h |
3236 |
- /usr/include/openmpi/ompi/mpi/java/mpiJava.h |
3237 |
-) |
3238 |
- |
3239 |
-pkg_setup() { |
3240 |
- fortran-2_pkg_setup |
3241 |
- java-pkg-opt-2_pkg_setup |
3242 |
- MPI_ESELECT_FILE="eselect.mpi.openmpi" |
3243 |
- |
3244 |
- elog |
3245 |
- elog "OpenMPI has an overwhelming count of configuration options." |
3246 |
- elog "Don't forget the EXTRA_ECONF environment variable can let you" |
3247 |
- elog "specify configure options if you find them necessary." |
3248 |
- elog |
3249 |
-} |
3250 |
- |
3251 |
-src_prepare() { |
3252 |
- default |
3253 |
- |
3254 |
- # Necessary for scalibility, see |
3255 |
- # http://www.open-mpi.org/community/lists/users/2008/09/6514.php |
3256 |
- echo 'oob_tcp_listen_mode = listen_thread' \ |
3257 |
- >> opal/etc/openmpi-mca-params.conf || die |
3258 |
-} |
3259 |
- |
3260 |
-multilib_src_configure() { |
3261 |
- if use java; then |
3262 |
- # We must always build with the right -source and -target |
3263 |
- # flags. Passing flags to javac isn't explicitly supported here |
3264 |
- # but we can cheat by overriding the configure test for javac. |
3265 |
- export ac_cv_path_JAVAC="$(java-pkg_get-javac) $(java-pkg_javac-args)" |
3266 |
- fi |
3267 |
- |
3268 |
- ECONF_SOURCE=${S} econf $(mpi_econf_args) \ |
3269 |
- --sysconfdir="${EPREFIX}/etc/${PN}" \ |
3270 |
- --enable-pretty-print-stacktrace \ |
3271 |
- --enable-orterun-prefix-by-default \ |
3272 |
- --with-hwloc="${EPREFIX}/usr" \ |
3273 |
- --with-libltdl="${EPREFIX}/usr" \ |
3274 |
- --with-libevent="${EPREFIX}/usr" \ |
3275 |
- --enable-mpi-fortran=$(usex fortran all no) \ |
3276 |
- $(use_enable cxx mpi-cxx) \ |
3277 |
- $(use_with cma) \ |
3278 |
- $(use_with cuda cuda "${EPREFIX}"/opt/cuda) \ |
3279 |
- $(use_enable romio io-romio) \ |
3280 |
- $(use_enable heterogeneous) \ |
3281 |
- $(use_enable ipv6) \ |
3282 |
- $(multilib_native_use_enable java) \ |
3283 |
- $(multilib_native_use_enable java mpi-java) \ |
3284 |
- $(multilib_native_use_with openmpi_fabrics_ofed verbs "${EPREFIX}"/usr) \ |
3285 |
- $(multilib_native_use_with openmpi_fabrics_knem knem "${EPREFIX}"/usr) \ |
3286 |
- $(multilib_native_use_with openmpi_fabrics_psm psm "${EPREFIX}"/usr) \ |
3287 |
- $(multilib_native_use_enable openmpi_ofed_features_control-hdr-padding openib-control-hdr-padding) \ |
3288 |
- $(multilib_native_use_enable openmpi_ofed_features_rdmacm openib-rdmacm) \ |
3289 |
- $(multilib_native_use_enable openmpi_ofed_features_udcm openib-udcm) \ |
3290 |
- $(multilib_native_use_enable openmpi_ofed_features_dynamic-sl openib-dynamic-sl) \ |
3291 |
- $(multilib_native_use_with openmpi_rm_pbs tm) \ |
3292 |
- $(multilib_native_use_with openmpi_rm_slurm slurm) |
3293 |
-} |
3294 |
- |
3295 |
-multilib_src_test() { |
3296 |
- # Doesn't work with the default src_test as the dry run (-n) fails. |
3297 |
- emake -j1 check |
3298 |
-} |
3299 |
- |
3300 |
-multilib_src_install() { |
3301 |
- default |
3302 |
- |
3303 |
- # fortran header cannot be wrapped (bug #540508), workaround part 1 |
3304 |
- if multilib_is_native_abi && use fortran; then |
3305 |
- mkdir "${T}"/fortran || die |
3306 |
- mv "${ED}"/$(mpi_root)/usr/include/mpif* "${T}"/fortran || die |
3307 |
- else |
3308 |
- # some fortran files get installed unconditionally |
3309 |
- rm \ |
3310 |
- "${ED}"/$(mpi_root)/usr/include/mpif* \ |
3311 |
- "${ED}"/$(mpi_root)/usr/bin/mpif* \ |
3312 |
- "${ED}"/$(mpi_root)/usr/bin/oshfort \ |
3313 |
- "${ED}"/$(mpi_root)/usr/bin/shmemfort \ |
3314 |
- || die |
3315 |
- fi |
3316 |
-} |
3317 |
- |
3318 |
-multilib_src_install_all() { |
3319 |
- # fortran header cannot be wrapped (bug #540508), workaround part 2 |
3320 |
- if use fortran; then |
3321 |
- mv "${T}"/fortran/mpif* "${ED}"/$(mpi_root)/usr/include || die |
3322 |
- fi |
3323 |
- |
3324 |
- # Remove la files, no static libs are installed and we have pkg-config |
3325 |
- find "${ED}" -name '*.la' -delete || die |
3326 |
- |
3327 |
- if use java; then |
3328 |
- local mpi_jar="${ED}"/$(mpi_root)/usr/$(get_libdir)/mpi.jar |
3329 |
- java-pkg_dojar "${mpi_jar}" |
3330 |
- # We don't want to install the jar file twice |
3331 |
- # so let's clean after ourselves. |
3332 |
- rm "${mpi_jar}" || die |
3333 |
- fi |
3334 |
- |
3335 |
- mpi_dodoc README AUTHORS NEWS VERSION |
3336 |
- mpi_imp_add_eselect |
3337 |
-} |
3338 |
|
3339 |
diff --git a/sys-cluster/openmpi/openmpi-4.0.1-r2.ebuild b/sys-cluster/openmpi/openmpi-4.0.1-r2.ebuild |
3340 |
deleted file mode 100644 |
3341 |
index 489306f51..000000000 |
3342 |
--- a/sys-cluster/openmpi/openmpi-4.0.1-r2.ebuild |
3343 |
+++ /dev/null |
3344 |
@@ -1,172 +0,0 @@ |
3345 |
-# Copyright 1999-2019 Gentoo Authors |
3346 |
-# Distributed under the terms of the GNU General Public License v2 |
3347 |
- |
3348 |
-EAPI=6 |
3349 |
- |
3350 |
-FORTRAN_NEEDED=fortran |
3351 |
- |
3352 |
-inherit cuda eapi7-ver flag-o-matic fortran-2 java-pkg-opt-2 toolchain-funcs multilib multilib-minimal mpi |
3353 |
- |
3354 |
-MY_P=${P/-mpi} |
3355 |
-S=${WORKDIR}/${MY_P} |
3356 |
- |
3357 |
-IUSE_OPENMPI_FABRICS=" |
3358 |
- openmpi_fabrics_ofed |
3359 |
- openmpi_fabrics_knem |
3360 |
- openmpi_fabrics_psm" |
3361 |
- |
3362 |
-IUSE_OPENMPI_RM=" |
3363 |
- openmpi_rm_pbs |
3364 |
- openmpi_rm_slurm" |
3365 |
- |
3366 |
-IUSE_OPENMPI_OFED_FEATURES=" |
3367 |
- openmpi_ofed_features_control-hdr-padding |
3368 |
- openmpi_ofed_features_udcm |
3369 |
- openmpi_ofed_features_rdmacm |
3370 |
- openmpi_ofed_features_dynamic-sl" |
3371 |
- |
3372 |
-DESCRIPTION="A high-performance message passing library (MPI)" |
3373 |
-HOMEPAGE="http://www.open-mpi.org" |
3374 |
-SRC_URI="http://www.open-mpi.org/software/ompi/v$(ver_cut 1-2)/downloads/${MY_P}.tar.bz2" |
3375 |
-LICENSE="BSD" |
3376 |
-SLOT="0" |
3377 |
-KEYWORDS="~amd64 ~x86 ~amd64-linux" |
3378 |
-IUSE="cma cuda cxx elibc_FreeBSD fortran heterogeneous ipv6 java romio |
3379 |
- ${IUSE_OPENMPI_FABRICS} ${IUSE_OPENMPI_RM} ${IUSE_OPENMPI_OFED_FEATURES}" |
3380 |
- |
3381 |
-REQUIRED_USE="openmpi_rm_slurm? ( !openmpi_rm_pbs ) |
3382 |
- openmpi_rm_pbs? ( !openmpi_rm_slurm ) |
3383 |
- openmpi_fabrics_psm? ( openmpi_fabrics_ofed ) |
3384 |
- openmpi_ofed_features_control-hdr-padding? ( openmpi_fabrics_ofed ) |
3385 |
- openmpi_ofed_features_udcm? ( openmpi_fabrics_ofed ) |
3386 |
- openmpi_ofed_features_rdmacm? ( openmpi_fabrics_ofed ) |
3387 |
- openmpi_ofed_features_dynamic-sl? ( openmpi_fabrics_ofed )" |
3388 |
- |
3389 |
-MPI_UNCLASSED_DEP_STR=" |
3390 |
- !sys-cluster/pmix |
3391 |
-" |
3392 |
- |
3393 |
-CDEPEND=" |
3394 |
- >=dev-libs/libevent-2.0.22:=[${MULTILIB_USEDEP},threads] |
3395 |
- dev-libs/libltdl:0[${MULTILIB_USEDEP}] |
3396 |
- >=sys-apps/hwloc-2.0.2[${MULTILIB_USEDEP}] |
3397 |
- >=sys-libs/zlib-1.2.8-r1[${MULTILIB_USEDEP}] |
3398 |
- cuda? ( >=dev-util/nvidia-cuda-toolkit-6.5.19-r1:= ) |
3399 |
- elibc_FreeBSD? ( dev-libs/libexecinfo ) |
3400 |
- openmpi_fabrics_ofed? ( sys-fabric/ofed:* ) |
3401 |
- openmpi_fabrics_knem? ( sys-cluster/knem ) |
3402 |
- openmpi_fabrics_psm? ( sys-fabric/infinipath-psm:* ) |
3403 |
- openmpi_rm_pbs? ( sys-cluster/torque ) |
3404 |
- openmpi_rm_slurm? ( sys-cluster/slurm ) |
3405 |
- openmpi_ofed_features_rdmacm? ( sys-fabric/librdmacm:* ) |
3406 |
- $(mpi_imp_deplist)" |
3407 |
- |
3408 |
-RDEPEND="${CDEPEND} |
3409 |
- java? ( >=virtual/jre-1.6 )" |
3410 |
- |
3411 |
-DEPEND="${CDEPEND} |
3412 |
- java? ( >=virtual/jdk-1.6 )" |
3413 |
- |
3414 |
-MULTILIB_WRAPPED_HEADERS=( |
3415 |
- /usr/include/mpi.h |
3416 |
- /usr/include/openmpi/ompi/mpi/java/mpiJava.h |
3417 |
-) |
3418 |
- |
3419 |
-pkg_setup() { |
3420 |
- fortran-2_pkg_setup |
3421 |
- java-pkg-opt-2_pkg_setup |
3422 |
- MPI_ESELECT_FILE="eselect.mpi.openmpi" |
3423 |
- |
3424 |
- elog |
3425 |
- elog "OpenMPI has an overwhelming count of configuration options." |
3426 |
- elog "Don't forget the EXTRA_ECONF environment variable can let you" |
3427 |
- elog "specify configure options if you find them necessary." |
3428 |
- elog |
3429 |
-} |
3430 |
- |
3431 |
-src_prepare() { |
3432 |
- default |
3433 |
- |
3434 |
- # Necessary for scalibility, see |
3435 |
- # http://www.open-mpi.org/community/lists/users/2008/09/6514.php |
3436 |
- echo 'oob_tcp_listen_mode = listen_thread' \ |
3437 |
- >> opal/etc/openmpi-mca-params.conf || die |
3438 |
-} |
3439 |
- |
3440 |
-multilib_src_configure() { |
3441 |
- if use java; then |
3442 |
- # We must always build with the right -source and -target |
3443 |
- # flags. Passing flags to javac isn't explicitly supported here |
3444 |
- # but we can cheat by overriding the configure test for javac. |
3445 |
- export ac_cv_path_JAVAC="$(java-pkg_get-javac) $(java-pkg_javac-args)" |
3446 |
- fi |
3447 |
- |
3448 |
- ECONF_SOURCE=${S} econf $(mpi_econf_args) \ |
3449 |
- --sysconfdir="${EPREFIX}/etc/${PN}" \ |
3450 |
- --enable-pretty-print-stacktrace \ |
3451 |
- --enable-orterun-prefix-by-default \ |
3452 |
- --with-hwloc="${EPREFIX}/usr" \ |
3453 |
- --with-hwloc-libdir="${EPREFIX}/usr/$(get_libdir)" \ |
3454 |
- --with-libltdl="${EPREFIX}/usr" \ |
3455 |
- --with-libevent="${EPREFIX}/usr" \ |
3456 |
- --with-libevent-libdir="${EPREFIX}/usr/$(get_libdir)" \ |
3457 |
- --enable-mpi-fortran=$(usex fortran all no) \ |
3458 |
- $(use_enable cxx mpi-cxx) \ |
3459 |
- $(use_with cma) \ |
3460 |
- $(multilib_native_use_with cuda cuda "${EPREFIX}"/opt/cuda) \ |
3461 |
- $(use_enable romio io-romio) \ |
3462 |
- $(use_enable heterogeneous) \ |
3463 |
- $(use_enable ipv6) \ |
3464 |
- $(multilib_native_use_enable java mpi-java) \ |
3465 |
- $(multilib_native_use_with openmpi_fabrics_ofed verbs "${EPREFIX}"/usr) \ |
3466 |
- $(multilib_native_use_with openmpi_fabrics_knem knem "${EPREFIX}"/usr) \ |
3467 |
- $(multilib_native_use_with openmpi_fabrics_psm psm "${EPREFIX}"/usr) \ |
3468 |
- $(multilib_native_use_enable openmpi_ofed_features_control-hdr-padding openib-control-hdr-padding) \ |
3469 |
- $(multilib_native_use_enable openmpi_ofed_features_rdmacm openib-rdmacm) \ |
3470 |
- $(multilib_native_use_enable openmpi_ofed_features_udcm openib-udcm) \ |
3471 |
- $(multilib_native_use_enable openmpi_ofed_features_dynamic-sl openib-dynamic-sl) \ |
3472 |
- $(multilib_native_use_with openmpi_rm_pbs tm) \ |
3473 |
- $(multilib_native_use_with openmpi_rm_slurm slurm) |
3474 |
-} |
3475 |
- |
3476 |
-multilib_src_test() { |
3477 |
- # Doesn't work with the default src_test as the dry run (-n) fails. |
3478 |
- emake -j1 check |
3479 |
-} |
3480 |
- |
3481 |
-multilib_src_install() { |
3482 |
- default |
3483 |
- |
3484 |
- # fortran header cannot be wrapped (bug #540508), workaround part 1 |
3485 |
- if multilib_is_native_abi && use fortran; then |
3486 |
- mkdir "${T}"/fortran || die |
3487 |
- mv "${ED}"/$(mpi_root)/usr/include/mpif* "${T}"/fortran || die |
3488 |
- else |
3489 |
- # some fortran files get installed unconditionally |
3490 |
- rm \ |
3491 |
- "${ED}"/$(mpi_root)/usr/include/mpif* \ |
3492 |
- "${ED}"/$(mpi_root)/usr/bin/mpif* \ |
3493 |
- || die |
3494 |
- fi |
3495 |
-} |
3496 |
- |
3497 |
-multilib_src_install_all() { |
3498 |
- # fortran header cannot be wrapped (bug #540508), workaround part 2 |
3499 |
- if use fortran; then |
3500 |
- mv "${T}"/fortran/mpif* "${ED}"/$(mpi_root)/usr/include || die |
3501 |
- fi |
3502 |
- |
3503 |
- # Remove la files, no static libs are installed and we have pkg-config |
3504 |
- find "${ED}" -name '*.la' -delete || die |
3505 |
- |
3506 |
- if use java; then |
3507 |
- local mpi_jar="${ED}"/$(mpi_root)/usr/$(get_libdir)/mpi.jar |
3508 |
- java-pkg_dojar "${mpi_jar}" |
3509 |
- # We don't want to install the jar file twice |
3510 |
- # so let's clean after ourselves. |
3511 |
- rm "${mpi_jar}" || die |
3512 |
- fi |
3513 |
- |
3514 |
- mpi_dodoc README AUTHORS NEWS VERSION |
3515 |
- mpi_imp_add_eselect |
3516 |
-} |