[gentoo-commits] gentoo-x86 commit in sci-chemistry/apbs: ChangeLog apbs-1.3-r2.ebuild

[Justin Lecher (jlec)]

jlec        12/01/04 17:25:25

  Modified:             ChangeLog
  Added:                apbs-1.3-r2.ebuild
  Log:
  Rewrite build, rely on pkg-config when possible, move to autotools-utils.eclass, handle static-libs correctly
  
  (Portage version: 2.2.0_alpha84/cvs/Linux x86_64)

Revision  Changes    Path
1.54                 sci-chemistry/apbs/ChangeLog

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/apbs/ChangeLog?rev=1.54&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/apbs/ChangeLog?rev=1.54&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/apbs/ChangeLog?r1=1.53&r2=1.54

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/apbs/ChangeLog,v
retrieving revision 1.53
retrieving revision 1.54
diff -u -r1.53 -r1.54
--- ChangeLog	13 Dec 2011 14:25:50 -0000	1.53
+++ ChangeLog	4 Jan 2012 17:25:25 -0000	1.54
@@ -1,6 +1,27 @@
 # ChangeLog for sci-chemistry/apbs
-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/apbs/ChangeLog,v 1.53 2011/12/13 14:25:50 jlec Exp $
+# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/apbs/ChangeLog,v 1.54 2012/01/04 17:25:25 jlec Exp $
+
+*apbs-1.3-r2 (04 Jan 2012)
+
+  04 Jan 2012; Justin Lecher <jlec@g.o> +apbs-1.3-r2.ebuild,
+  +files/apbs-1.3/0001-autoconf-2.68.patch,
+  +files/apbs-1.3/0002-python-linking.patch,
+  +files/apbs-1.3/0003-apbs-1.3-pkg-config-file.patch,
+  +files/apbs-1.3/0004-apbs-1.3-system-zlib.patch,
+  +files/apbs-1.3/0005-apbs-1.3-linking.patch,
+  +files/apbs-1.3/0006-apbs-1.3-clean-targets.patch,
+  +files/apbs-1.3/0007-apbs-1.3-configure.patch,
+  +files/apbs-1.3/0008-apbs-1.3-broken-test.patch,
+  +files/apbs-1.3/0009-apbs-1.3-use-pkg-config-for-zlib-detection.patch,
+  +files/apbs-1.3/0010-apbs-1.3-use-OPENMP_CFLAGS-instead-of-OPENMP_LIBS.patch,
+  +files/apbs-1.3/0011-apbs-1.3-shared-linking.patch,
+  +files/apbs-1.3/0012-apbs-1.3-python-linking-correction.patch,
+  +files/apbs-1.3/0013-apbs-1.3-tools-installation.patch,
+  +files/apbs-1.3/0014-apbs-1.3-pythonlib-fix.patch,
+  +files/apbs-1.3/0015-apbs-1.3-pythonlib-fix.patch:
+  Rewrite build, rely on pkg-config when possible, move to
+  autotools-utils.eclass, handle static-libs correctly
 
   13 Dec 2011; Justin Lecher <jlec@g.o> apbs-1.2.1b-r4.ebuild,
   apbs-1.3.ebuild, apbs-1.3-r1.ebuild:



1.1                  sci-chemistry/apbs/apbs-1.3-r2.ebuild

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/apbs/apbs-1.3-r2.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/apbs/apbs-1.3-r2.ebuild?rev=1.1&content-type=text/plain

Index: apbs-1.3-r2.ebuild
===================================================================
# Copyright 1999-2012 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/apbs/apbs-1.3-r2.ebuild,v 1.1 2012/01/04 17:25:25 jlec Exp $

EAPI=4

PYTHON_DEPEND="python? 2"

inherit autotools-utils eutils fortran-2 python toolchain-funcs versionator

MY_PV=$(get_version_component_range 1-3)
MY_P="${PN}-${MY_PV}"

DESCRIPTION="For evaluation of electrostatic properties of nanoscale biomolecular systems"
HOMEPAGE="http://apbs.sourceforge.net/"
SRC_URI="mirror://sourceforge/${PN}/${P}-source.tar.gz"

SLOT="0"
LICENSE="BSD"
KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux"
IUSE="arpack doc examples fetk mpi openmp python static-libs tools"
REQUIRED_USE="mpi? ( !python )"

DEPEND="
	dev-libs/maloc[mpi=]
	virtual/blas
	sys-libs/readline
	virtual/fortran
	arpack? ( sci-libs/arpack )
	tools? ( !sci-libs/gts )
	fetk? (
		sci-libs/fetk
		sci-libs/amd
		sci-libs/umfpack
		sci-libs/superlu )
	mpi? ( virtual/mpi )"
RDEPEND="${DEPEND}"

S="${WORKDIR}"/"${MY_P}-source"

AUTOTOOLS_IN_SOURCE_BUILD=1
MAKEOPTS+=" -j1"

pkg_setup() {
	fortran-2_pkg_setup
	use python && python_set_active_version 2 && python_pkg_setup
	if [[ -z ${MAXMEM} ]]; then
		einfo "You can specify the max amount of RAM used"
		einfo "by setting MAXMEM=\"your size in MB\""
	else
		einfo "Settings max memory usage to ${MAXMEM} MB"
	fi
}

# git clone ssh://woodpecker/home/jlec/apbs.git
PATCHES=( "${FILESDIR}"/${P}/00{01..15}* )

src_prepare() {
	rm -rf contrib/{blas,maloc,opal,zlib} || die
	find -name "._*" -delete || die
	touch apbs.pc.in || die

	autotools-utils_src_prepare

	sed \
		-e "s:GENTOO_PKG_NAME:${PN}:g" \
		-i Makefile.am || die "Cannot correct package name"
	sed \
		-e 's:libmaloc.a:libmaloc.so:g' \
		-e 's:-lblas::g' \
		-i configure.ac || die
	sed -e 's:opal::g' -i contrib/Makefile.am || die
	sed \
		-e 's:noinst_PROGRAMS:bin_PROGRAMS:g' \
		-i tools/*/Makefile.am || die
	eautoreconf
}

src_configure() {
	local myeconfargs=( --docdir="${EPREFIX}/usr/share/doc/${PF}" )
	use arpack && myeconfargs+=( --with-arpack="${EPREFIX}/usr/$(get_libdir)" )

	# check which mpi version is installed and tell configure
	if use mpi; then
		export CC="${EPREFIX}/usr/bin/mpicc"
		export F77="${EPREFIX}/usr/bin/mpif77"

		if has_version sys-cluster/mpich; then
	 		myeconfargs+=( --with-mpich="${EPREFIX}/usr" )
		elif has_version sys-cluster/mpich2; then
			myeconfargs+=( --with-mpich2="${EPREFIX}/usr" )
		elif has_version sys-cluster/openmpi; then
			myeconfargs+=( --with-openmpi="${EPREFIX}/usr" )
		fi
	fi || die "Failed to select proper mpi implementation"

	if use fetk; then
		myeconfargs+=( --with-fetk-include="${EPREFIX}/usr/include" --with-fetk-library="${EPREFIX}/usr/$(get_libdir)" )
	else
		myeconfargs+=( --disable-fetk )
	fi

	[[ -n ${MAXMEM} ]] && myeconfargs+=( --with-maxmem=${MAXMEM} )

	if use python; then
		myeconfargs+=( --enable-tools  )
	else
		myeconfargs+=( $(use_enable tools) )
	fi

	myeconfargs+=(
		--disable-maloc-rebuild
		--enable-shared
		$(use_enable openmp)
		$(use_enable python)
		)
	autotools-utils_src_configure
}

src_test() {
	export LC_NUMERIC=C
	cd examples && make test \
		|| die "Tests failed"
	grep -q 'FAILED' "${S}"/examples/TESTRESULTS.log && die "Tests failed"
}

src_install() {
	autotools-utils_src_install

	use doc && dohtml -r doc/*
	use examples && insinto /usr/share/${PN} && doins -r examples
	use tools && emake DESTDIR="${D}" install-tools

	if use python && ! use mpi; then
		insinto $(python_get_sitedir)/${PN}
		doins tools/manip/*.py
		doins tools/python/{*.py,*.pqr}
		doins tools/python/*/{*.py,*.so}
		python_clean_installation_image
	fi
}

pkg_postinst() {
	use python && python_mod_optimize ${PN}
}

pkg_postrm() {
	use python && python_mod_cleanup ${PN}
}