[gentoo-commits] repo/gentoo:master commit in: sci-biology/seaview/

[David Seifert]

commit:     924e136387717515e0531c0a6657677f7edfdcb8
Author:     David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sun Jul 31 12:10:31 2016 +0000
Commit:     David Seifert <soap <AT> gentoo <DOT> org>
CommitDate: Sun Jul 31 12:20:39 2016 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=924e1363

sci-biology/seaview: version bump

* EAPI=6

Package-Manager: portage-2.3.0

 sci-biology/seaview/Manifest           |  1 +
 sci-biology/seaview/seaview-4.6.ebuild | 78 ++++++++++++++++++++++++++++++++++
 2 files changed, 79 insertions(+)

diff --git a/sci-biology/seaview/Manifest b/sci-biology/seaview/Manifest
index fc48e74..b33452a 100644
--- a/sci-biology/seaview/Manifest
+++ b/sci-biology/seaview/Manifest
@@ -1,2 +1,3 @@
 DIST seaview_4.3.5.tar.gz 309530 SHA256 38050d6792eb799d61e5e849f76971a9c7d45f467e5c04fbc4363062d8e7100d SHA512 b20c018da9a29d79fe0393fed5d29117729492ea8f36e72d4aeb98044a3de4a13331bd29e76ca552a08f6da764e57e69f9fb0325fc031551514d7a54b56c849a WHIRLPOOL 82fc7324bf1d934d69712629808d6b4178a5f2cdcf25351fb2fe2784f9cea0c1ec0aaaba7a3a08c84795108eb049394ceaab052af8cc0efbb0975064fa4e80e0
 DIST seaview_4.5.4.tar.gz 420608 SHA256 f4569ad7f1d8de2b141175b1122f036cb45f55f8e9e59e42d6026668e091e7ed SHA512 a8a2e49a13f87ae4279311068147169b1e17874e9ce5787003b854c7271efc7a128db6916bb883a9b7b0b90f855fe40d83c77e9fd9f5751464e04346b9923301 WHIRLPOOL c52f7ac9d7d4c85d7670bdb3a87c9ba94904b25e11583ad8abf3de9f43fa3967d64b96d447ebb5ebe614053c4de64828d1c3c5763c64dc269e78fb3c49151886
+DIST seaview_4.6.tar.gz 424258 SHA256 6826a41bf2980922add66857abe42e3e6a19f0d1bb13845252745db7740c37bc SHA512 e005d9dcc9e03c5636404e94f0059f7d4a9289fe77ecdab765e3ca2b59d826b8711a344f3824d079383a7ede0fe17b3b06694dfb7b709bb6a0a1e38cef6ee1d6 WHIRLPOOL 50375ee836de8de50556a69054baa841f27025d679ce65953aee55d69c89129246eef8896b5833b5874cbdcbc55900dd4e37d4814c4f0a90097cb8c37f0ef1ae

diff --git a/sci-biology/seaview/seaview-4.6.ebuild b/sci-biology/seaview/seaview-4.6.ebuild
new file mode 100644
index 0000000..b75b879
--- /dev/null
+++ b/sci-biology/seaview/seaview-4.6.ebuild
@@ -0,0 +1,78 @@
+# Copyright 1999-2016 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Id$
+
+EAPI=6
+
+inherit eutils toolchain-funcs
+
+DESCRIPTION="A graphical multiple sequence alignment editor"
+HOMEPAGE="http://pbil.univ-lyon1.fr/software/seaview.html"
+SRC_URI="ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/${PN}_${PV}.tar.gz"
+
+LICENSE="public-domain"
+SLOT="0"
+KEYWORDS="~amd64 ~x86"
+IUSE="+xft"
+
+RDEPEND="
+	sys-libs/zlib
+	x11-libs/fltk:1
+	x11-libs/libX11
+	xft? (
+		x11-libs/libXft
+		x11-libs/fltk:1[xft] )
+	sci-biology/clustalw:2
+	|| ( sci-libs/libmuscle sci-biology/muscle )
+	sci-biology/phyml"
+DEPEND="${RDEPEND}
+	virtual/pkgconfig"
+
+S="${WORKDIR}/${PN}"
+
+src_prepare() {
+	default
+
+	# respect CXXFLAGS (package uses them as CFLAGS)
+	sed \
+		-e "s:^CC.*:CC = $(tc-getCC):" \
+		-e "s:^CXX.*:CXX = $(tc-getCXX):" \
+		-e "s:\$(OPT):${CXXFLAGS}:" \
+		-e "s:^OPT:#OPT:" \
+		-e "s:^FLTK = .*$:FLTK = ${EPREFIX}/usr/include/fltk-1:" \
+		-e "s:^#IFLTK .*:IFLTK = $(fltk-config --use-images --cflags):" \
+		-e "s:^#LFLTK .*:LFLTK = $(fltk-config --use-images --ldflags):" \
+		-e "s:^USE_XFT:#USE_XFT:" \
+		-e "s:^#HELPFILE:HELPFILE:" \
+		-e "s:/usr/share/doc/seaview/seaview.htm:${EPREFIX}/usr/share/seaview/seaview.htm:" \
+		-e "s:^#PHYMLNAME:PHYMLNAME:" \
+		-e 's:-lXinerama::g' \
+		-e 's:-lpng::g' \
+		-e 's:-ljpeg::g' \
+		-e 's:-lfontconfig::g' \
+		-i Makefile || die "sed failed while editing Makefile"
+
+	if use xft; then
+		sed \
+			-e "s:^#USE_XFT .*:USE_XFT = -DUSE_XFT $($(tc-getPKG_CONFIG) --cflags xft):" \
+			-e "s:-lXft:$($(tc-getPKG_CONFIG) --libs xft):" \
+			-i Makefile || die "sed failed while editing Makefile to enable xft"
+	else
+		sed -i -e "s:-lXft::" Makefile || die
+	fi
+}
+
+src_install() {
+	dobin seaview
+
+	# /usr/share/seaview/seaview.html is hardcoded in the binary, see Makefile
+	insinto /usr/share/seaview
+	doins example.nxs seaview.html
+
+	insinto /usr/share/seaview/images
+	doins seaview.xpm
+
+	make_desktop_entry seaview Seaview
+
+	doman seaview.1
+}