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| From: | "Andrey Kislyuk (weaver)" <weaver@g.o> |
|---|---|
| To: | gentoo-commits@l.g.o |
| Subject: | [gentoo-commits] gentoo-x86 commit in sci-biology/cufflinks: metadata.xml ChangeLog cufflinks-1.3.0.ebuild Manifest |
| Date: | Sun, 05 Feb 2012 03:57:06 |
| Message-Id: | 20120205035655.D442620034@flycatcher.gentoo.org |
| 1 | weaver 12/02/05 03:56:55 |
| 2 | |
| 3 | Added: metadata.xml ChangeLog cufflinks-1.3.0.ebuild |
| 4 | Manifest |
| 5 | Log: |
| 6 | New package, ebuild written by me |
| 7 | |
| 8 | (Portage version: 2.2.0_alpha74/cvs/Linux x86_64) |
| 9 | |
| 10 | Revision Changes Path |
| 11 | 1.1 sci-biology/cufflinks/metadata.xml |
| 12 | |
| 13 | file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/cufflinks/metadata.xml?rev=1.1&view=markup |
| 14 | plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/cufflinks/metadata.xml?rev=1.1&content-type=text/plain |
| 15 | |
| 16 | Index: metadata.xml |
| 17 | =================================================================== |
| 18 | <?xml version="1.0" encoding="UTF-8"?> |
| 19 | <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
| 20 | <pkgmetadata> |
| 21 | <maintainer> |
| 22 | <email>weaver@g.o</email> |
| 23 | <name>Andrey Kislyuk</name> |
| 24 | </maintainer> |
| 25 | <herd>sci-biology</herd> |
| 26 | </pkgmetadata> |
| 27 | |
| 28 | |
| 29 | |
| 30 | 1.1 sci-biology/cufflinks/ChangeLog |
| 31 | |
| 32 | file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/cufflinks/ChangeLog?rev=1.1&view=markup |
| 33 | plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/cufflinks/ChangeLog?rev=1.1&content-type=text/plain |
| 34 | |
| 35 | Index: ChangeLog |
| 36 | =================================================================== |
| 37 | # ChangeLog for sci-biology/cufflinks |
| 38 | # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 |
| 39 | # $Header: /var/cvsroot/gentoo-x86/sci-biology/cufflinks/ChangeLog,v 1.1 2012/02/05 03:56:55 weaver Exp $ |
| 40 | |
| 41 | *cufflinks-1.3.0 (05 Feb 2012) |
| 42 | |
| 43 | 05 Feb 2012; Andrey Kislyuk <weaver@g.o> +cufflinks-1.3.0.ebuild, |
| 44 | +metadata.xml: |
| 45 | New package, ebuild written by me |
| 46 | |
| 47 | |
| 48 | |
| 49 | |
| 50 | 1.1 sci-biology/cufflinks/cufflinks-1.3.0.ebuild |
| 51 | |
| 52 | file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/cufflinks/cufflinks-1.3.0.ebuild?rev=1.1&view=markup |
| 53 | plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/cufflinks/cufflinks-1.3.0.ebuild?rev=1.1&content-type=text/plain |
| 54 | |
| 55 | Index: cufflinks-1.3.0.ebuild |
| 56 | =================================================================== |
| 57 | # Copyright 1999-2012 Gentoo Foundation |
| 58 | # Distributed under the terms of the GNU General Public License v2 |
| 59 | # $Header: /var/cvsroot/gentoo-x86/sci-biology/cufflinks/cufflinks-1.3.0.ebuild,v 1.1 2012/02/05 03:56:55 weaver Exp $ |
| 60 | |
| 61 | EAPI=4 |
| 62 | |
| 63 | inherit flag-o-matic autotools |
| 64 | |
| 65 | DESCRIPTION="Transcript assembly, differential expression, and differential regulation for RNA-Seq" |
| 66 | HOMEPAGE="http://cufflinks.cbcb.umd.edu/" |
| 67 | SRC_URI="http://cufflinks.cbcb.umd.edu/downloads/${P}.tar.gz" |
| 68 | |
| 69 | LICENSE="Artistic" |
| 70 | SLOT="0" |
| 71 | IUSE="" |
| 72 | KEYWORDS="~amd64 ~x86" |
| 73 | |
| 74 | DEPEND="sci-biology/samtools |
| 75 | dev-libs/boost:1.46" |
| 76 | RDEPEND="${DEPEND}" |
| 77 | |
| 78 | MAKEOPTS="${MAKEOPTS} -j1" |
| 79 | |
| 80 | src_prepare() { |
| 81 | filter-ldflags -Wl,--as-needed |
| 82 | eautoreconf |
| 83 | } |
| 84 | |
| 85 | src_configure() { |
| 86 | econf \ |
| 87 | --with-boost-libdir="${EPREFIX}/usr/$(get_libdir)/boost-1_46" || die |
| 88 | } |
| 89 | |
| 90 | src_install() { |
| 91 | emake DESTDIR="${D}" install || die |
| 92 | dodoc README AUTHORS |
| 93 | } |
| 94 | |
| 95 | |
| 96 | |
| 97 | 1.1 sci-biology/cufflinks/Manifest |
| 98 | |
| 99 | file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/cufflinks/Manifest?rev=1.1&view=markup |
| 100 | plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/cufflinks/Manifest?rev=1.1&content-type=text/plain |
| 101 | |
| 102 | Index: Manifest |
| 103 | =================================================================== |
| 104 | DIST cufflinks-1.3.0.tar.gz 676660 RMD160 b497d7cfc12453024ac02da24a9eef8987ab3cab SHA1 fa93a7a33f0649793ec1d185cb7043fd0dc2018b SHA256 c1e194e30e6ba2e1cbbd35e5f92be59f9fdef95a12079b3141790efbbdbdfd86 |
| 105 | EBUILD cufflinks-1.3.0.ebuild 868 RMD160 1b4a437e6dafc811189419579c224d6f0c6ee957 SHA1 8339db10da39bebe7362241736d96a4547f6e08e SHA256 ccaf6c093fd0e0a8143969a8072d9deaf9229e8966d683b88fe796c73e741d7e |
| 106 | MISC ChangeLog 283 RMD160 374872f8ad14f9822fbd10f3c20762c29f993a8b SHA1 dd11b1b5698d3c46ddd6234c94e8e8bfd6583925 SHA256 3b766f518b852692cb7c589f76db2e15f115d070fe4479c4130319c456c29b7d |
| 107 | MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110 |