| 1 |
weaver 08/12/31 00:28:51 |
| 2 |
|
| 3 |
Added: metadata.xml ChangeLog phrap-1.080812.ebuild |
| 4 |
Manifest |
| 5 |
Log: |
| 6 |
Import from Science overlay, bug 114094 |
| 7 |
(Portage version: 2.2_rc12/cvs/Linux 2.6.26-tuxonice i686) |
| 8 |
|
| 9 |
Revision Changes Path |
| 10 |
1.1 sci-biology/phrap/metadata.xml |
| 11 |
|
| 12 |
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/phrap/metadata.xml?rev=1.1&view=markup |
| 13 |
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/phrap/metadata.xml?rev=1.1&content-type=text/plain |
| 14 |
|
| 15 |
Index: metadata.xml |
| 16 |
=================================================================== |
| 17 |
<?xml version="1.0" encoding="UTF-8"?> |
| 18 |
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
| 19 |
<pkgmetadata> |
| 20 |
<maintainer> |
| 21 |
<email>weaver@g.o</email> |
| 22 |
<name>Andrey Kislyuk</name> |
| 23 |
</maintainer> |
| 24 |
<herd>sci-biology</herd> |
| 25 |
</pkgmetadata> |
| 26 |
|
| 27 |
|
| 28 |
|
| 29 |
1.1 sci-biology/phrap/ChangeLog |
| 30 |
|
| 31 |
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/phrap/ChangeLog?rev=1.1&view=markup |
| 32 |
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/phrap/ChangeLog?rev=1.1&content-type=text/plain |
| 33 |
|
| 34 |
Index: ChangeLog |
| 35 |
=================================================================== |
| 36 |
# ChangeLog for sci-biology/phrap |
| 37 |
# Copyright 1999-2008 Gentoo Foundation; Distributed under the GPL v2 |
| 38 |
# $Header: /var/cvsroot/gentoo-x86/sci-biology/phrap/ChangeLog,v 1.1 2008/12/31 00:28:51 weaver Exp $ |
| 39 |
|
| 40 |
*phrap-1.080812 (31 Dec 2008) |
| 41 |
|
| 42 |
31 Dec 2008; weaver <weaver@g.o> +metadata.xml, |
| 43 |
+phrap-1.080812.ebuild: |
| 44 |
Import from Science overlay, bug 114094. Thanks to Brady Catherman and Martin |
| 45 |
Mokrejs. |
| 46 |
|
| 47 |
|
| 48 |
|
| 49 |
|
| 50 |
1.1 sci-biology/phrap/phrap-1.080812.ebuild |
| 51 |
|
| 52 |
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/phrap/phrap-1.080812.ebuild?rev=1.1&view=markup |
| 53 |
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/phrap/phrap-1.080812.ebuild?rev=1.1&content-type=text/plain |
| 54 |
|
| 55 |
Index: phrap-1.080812.ebuild |
| 56 |
=================================================================== |
| 57 |
# Copyright 1999-2008 Gentoo Foundation |
| 58 |
# Distributed under the terms of the GNU General Public License v2 |
| 59 |
# $Header: /var/cvsroot/gentoo-x86/sci-biology/phrap/phrap-1.080812.ebuild,v 1.1 2008/12/31 00:28:51 weaver Exp $ |
| 60 |
|
| 61 |
DESCRIPTION="Phrap, swat, cross_match: Shotgun assembly and alignment utilities" |
| 62 |
HOMEPAGE="http://www.phrap.org/" |
| 63 |
SRC_URI="phrap-${PV}-distrib.tar.gz" |
| 64 |
|
| 65 |
LICENSE="phrap" |
| 66 |
SLOT="0" |
| 67 |
KEYWORDS="~x86" |
| 68 |
IUSE="" |
| 69 |
|
| 70 |
DEPEND="" |
| 71 |
RDEPEND="" |
| 72 |
|
| 73 |
S="${WORKDIR}" |
| 74 |
|
| 75 |
RESTRICT="fetch" |
| 76 |
|
| 77 |
pkg_nofetch() { |
| 78 |
einfo "Please visit http://www.phrap.org/phredphrapconsed.html and obtain the file" |
| 79 |
einfo "\"distrib.tar.gz\", then rename it to \"phrap-${PV}-distrib.tar.gz\"" |
| 80 |
einfo "and put it in ${DISTDIR}" |
| 81 |
} |
| 82 |
|
| 83 |
src_compile() { |
| 84 |
sed -i 's/CFLAGS=/#CFLAGS=/' makefile |
| 85 |
sed -i 's|#!/usr/local/bin/perl|#!/usr/bin/env perl|' phrapview |
| 86 |
emake || die "emake failed" |
| 87 |
} |
| 88 |
|
| 89 |
src_install() { |
| 90 |
dobin cluster cross_match loco phrap phrapview swat |
| 91 |
for i in {general,phrap,swat}.doc ; do |
| 92 |
newdoc ${i} ${i}.txt |
| 93 |
done |
| 94 |
} |
| 95 |
|
| 96 |
pkg_postinst() { |
| 97 |
elog If you are operating a non-commercial \(academic or government\) |
| 98 |
elog computer facility which provides access to several independent |
| 99 |
elog investigators, you are required by the licensing agreement to set the |
| 100 |
elog permissions on the executables and source code to allow execute but |
| 101 |
elog not read access, so that the programs may not be copied. |
| 102 |
elog |
| 103 |
elog Phrap documentation is installed in ${ROOT}/usr/share/doc/${P}. |
| 104 |
} |
| 105 |
|
| 106 |
|
| 107 |
|
| 108 |
1.1 sci-biology/phrap/Manifest |
| 109 |
|
| 110 |
file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/phrap/Manifest?rev=1.1&view=markup |
| 111 |
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/phrap/Manifest?rev=1.1&content-type=text/plain |
| 112 |
|
| 113 |
Index: Manifest |
| 114 |
=================================================================== |
| 115 |
DIST phrap-1.080812-distrib.tar.gz 317350 RMD160 9ac2e6209b4b681fd8099c49be5fbd511a5da1a8 SHA1 0f63613324dbce931c9b38b84d8ede314730dc87 SHA256 7025f3cb30e5a3305a13d150f39a85580ade0bbf8169b25db65cbe396e201052 |
| 116 |
EBUILD phrap-1.080812.ebuild 1336 RMD160 ee0bf5912ce91073e51d40f6d06cb6bb839fe5c2 SHA1 75eb3a6e9f2ec42e941fd6c7cfdb59f1a4df0742 SHA256 f387bf5272bdd91899822c11f14ad07b70ee6665d287baea75f8cf812ddd7406 |
| 117 |
MISC ChangeLog 324 RMD160 aace994b3db1a0e6324cdcdafe48aa6059beddfa SHA1 f989b23a9aa0dfe4bafc330a0f3bbbe5033f87e6 SHA256 e10c899e988bb75cb52b687aff947d43ca693903805b7553aee1630ab44203c1 |
| 118 |
MISC metadata.xml 259 RMD160 d9d81b67d635fabd81aef8ae0edf971211ae9072 SHA1 8e32f751c67ff891fa35405a2cf6fb33752d6eb1 SHA256 541c3fbcf299d9a8ccf4132ee61f9e53a5d737cefdaa6fdc77764d8d4c7f3110 |
Archives