[gentoo-commits] proj/sci:master commit in: sci-biology/minimap2/

[Martin Mokrejs]

commit:     6def45a03309ee5cee96b1b4988ab8c874d4f6df
Author:     Martin Mokrejs <mmokrejs <AT> gmail <DOT> com>
AuthorDate: Tue Nov 30 11:54:26 2021 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Tue Nov 30 11:54:26 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=6def45a0

sci-biology/minimap2: version bump

Respect CFLAGS although the Makefile compiles different routines
for SSE4.1 processors. The options appear later on the commandline
so should override eventual CFLAGS -mtune and -march values.

Package-Manager: Portage-3.0.28, Repoman-3.0.3
Signed-off-by: Martin Mokrejs <mmokrejs <AT> gmail.com>

 .../minimap2/{minimap2-2.17.ebuild => minimap2-2.23.ebuild}        | 7 +++++++
 1 file changed, 7 insertions(+)

diff --git a/sci-biology/minimap2/minimap2-2.17.ebuild b/sci-biology/minimap2/minimap2-2.23.ebuild
similarity index 76%
rename from sci-biology/minimap2/minimap2-2.17.ebuild
rename to sci-biology/minimap2/minimap2-2.23.ebuild
index e4f51e1d9..9f335e99c 100644
--- a/sci-biology/minimap2/minimap2-2.17.ebuild
+++ b/sci-biology/minimap2/minimap2-2.23.ebuild
@@ -3,6 +3,8 @@
 
 EAPI=7
 
+inherit toolchain-funcs
+
 DESCRIPTION="splice-aware sequence aligner"
 HOMEPAGE="https://github.com/lh3/minimap2"
 SRC_URI="https://github.com/lh3/${PN}/releases/download/v${PV}/${P}.tar.bz2"
@@ -15,6 +17,11 @@ DEPEND=""
 RDEPEND="${DEPEND}"
 BDEPEND=""
 
+src_prepare(){
+	sed -e 's/-O2 //' -e 's/^CFLAGS=/CFLAGS+=/' -i Makefile || die
+	eapply_user
+}
+
 src_install(){
 	dobin "${PN}"
 }