[gentoo-commits] gentoo-x86 commit in sci-biology/allpaths: ChangeLog allpaths-3.1.ebuild

[Andrey Kislyuk (weaver)]

weaver      10/01/26 20:43:21

  Modified:             ChangeLog
  Added:                allpaths-3.1.ebuild
  Log:
  Version bump
  (Portage version: 2.2_rc30/cvs/Linux x86_64, RepoMan options: --force)

Revision  Changes    Path
1.6                  sci-biology/allpaths/ChangeLog

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/allpaths/ChangeLog?rev=1.6&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/allpaths/ChangeLog?rev=1.6&content-type=text/plain
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/allpaths/ChangeLog?r1=1.5&r2=1.6

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/allpaths/ChangeLog,v
retrieving revision 1.5
retrieving revision 1.6
diff -u -r1.5 -r1.6
--- ChangeLog	3 Jan 2010 14:08:56 -0000	1.5
+++ ChangeLog	26 Jan 2010 20:43:21 -0000	1.6
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/allpaths
 # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/allpaths/ChangeLog,v 1.5 2010/01/03 14:08:56 pacho Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/allpaths/ChangeLog,v 1.6 2010/01/26 20:43:21 weaver Exp $
+
+*allpaths-3.1 (26 Jan 2010)
+
+  26 Jan 2010; Andrey Kislyuk <weaver@g.o> +allpaths-3.1.ebuild:
+  Version bump
 
   03 Jan 2010; Pacho Ramos <pacho@g.o> allpaths-2.0.ebuild:
   amd64 stable, bug 290927



1.1                  sci-biology/allpaths/allpaths-3.1.ebuild

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/allpaths/allpaths-3.1.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/allpaths/allpaths-3.1.ebuild?rev=1.1&content-type=text/plain

Index: allpaths-3.1.ebuild
===================================================================
# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/allpaths/allpaths-3.1.ebuild,v 1.1 2010/01/26 20:43:21 weaver Exp $

EAPI="2"

inherit base

DESCRIPTION="De novo assembly of whole-genome shotgun microreads"
HOMEPAGE="http://www.broadinstitute.org/science/programs/genome-biology/crd"
SRC_URI="ftp://ftp.broad.mit.edu/pub/crd/ALLPATHS/Release-3-0/allpaths-${PV}.tgz
	ftp://ftp.broad.mit.edu/pub/crd/ALLPATHS/Release-3-0/AllPathsV3_Manual_r1.0.docx"

LICENSE="Whitehead-MIT"
SLOT="3"
IUSE=""
KEYWORDS="~amd64"

DEPEND=">=sys-devel/gcc-4.3.2"
RDEPEND=""

S="${WORKDIR}/AllPaths"

src_compile() {
	base_src_compile
	emake install_scripts || die
}

src_install() {
	exeinto /usr/share/${P}/bin
	find bin -type f -executable | xargs doexe || die
	echo "PATH=\"/usr/share/${P}/bin\"" > "${S}/99${P}"
	doenvd "${S}/99${P}" || die
	dosym /usr/share/${P}/bin/RunAllPaths3G /usr/bin/RunAllPaths3G || die
	insinto /usr/share/doc/${PF}
	doins "${DISTDIR}/AllPathsV3_Manual_r1.0.docx"
}