[gentoo-commits] proj/sci:master commit in: sci-biology/cortex_var/

[Andrew Ammerlaan]

commit:     d71c56239475f71bc640d54a4e70f71335c9d637
Author:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
AuthorDate: Mon Feb  1 10:32:54 2021 +0000
Commit:     Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net>
CommitDate: Mon Feb  1 10:32:54 2021 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=d71c5623

sci-biology/cortex_var: fix sed calls

but still does not compile, needs a patch

Package-Manager: Portage-3.0.14, Repoman-3.0.2
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net>

 sci-biology/cortex_var/cortex_var-1.0.5.21.ebuild | 8 +++++---
 1 file changed, 5 insertions(+), 3 deletions(-)

diff --git a/sci-biology/cortex_var/cortex_var-1.0.5.21.ebuild b/sci-biology/cortex_var/cortex_var-1.0.5.21.ebuild
index 0e611a6c6..f5b86e25c 100644
--- a/sci-biology/cortex_var/cortex_var-1.0.5.21.ebuild
+++ b/sci-biology/cortex_var/cortex_var-1.0.5.21.ebuild
@@ -28,13 +28,15 @@ S="${WORKDIR}/CORTEX_release_v${PV}"
 
 src_prepare(){
 	default
-	sed -e "s/ -O3 / ${CFLAGS} /" Makefile || die
-	sed -e "s#libs/gsl-1.15#${EPREFIX}/usr/include/gsl#" Makefile || die
+	sed -i -e "s/ -O3 / ${CFLAGS} /" Makefile || die
+	sed -i -e "s#libs/gsl-1.15#${EPREFIX}/usr/include/gsl#" Makefile || die
 }
 
 src_compile(){
 	rm -rf libs/htslib libs/gsl-1.15 || die
-	emake NUM_COLS=1 MAXK=31 cortex_var || die
+	emake -C libs/string_buffer
+	emake STRING_BUF_PATH="${S}/libs/string_buffer" HTS_PATH="/usr/include/" -C libs/seq_file
+	emake NUM_COLS=1 MAXK=31 cortex_var
 }
 
 src_install(){