[gentoo-commits] gentoo-x86 commit in sci-biology/cutg: ChangeLog cutg-160.ebuild

[Olivier Fisette (ribosome)]

ribosome    08/08/27 14:52:03

  Modified:             ChangeLog
  Added:                cutg-160.ebuild
  Log:
  New upstream version.
  (Portage version: 2.1.4.4)

Revision  Changes    Path
1.50                 sci-biology/cutg/ChangeLog

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/cutg/ChangeLog?rev=1.50&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/cutg/ChangeLog?rev=1.50&content-type=text/plain
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/cutg/ChangeLog?r1=1.49&r2=1.50

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/cutg/ChangeLog,v
retrieving revision 1.49
retrieving revision 1.50
diff -u -r1.49 -r1.50
--- ChangeLog	10 Dec 2006 18:55:06 -0000	1.49
+++ ChangeLog	27 Aug 2008 14:52:03 -0000	1.50
@@ -1,6 +1,11 @@
 # ChangeLog for sci-biology/cutg
-# Copyright 2000-2006 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/ChangeLog,v 1.49 2006/12/10 18:55:06 ribosome Exp $
+# Copyright 2000-2008 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/ChangeLog,v 1.50 2008/08/27 14:52:03 ribosome Exp $
+
+*cutg-160 (27 Aug 2008)
+
+  27 Aug 2008; Olivier Fisette <ribosome@g.o> +cutg-160.ebuild:
+  New upstream version.
 
   10 Dec 2006; Olivier Fisette <ribosome@g.o> -cutg-150.ebuild:
   Pruned old version.



1.1                  sci-biology/cutg/cutg-160.ebuild

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/cutg/cutg-160.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/cutg/cutg-160.ebuild?rev=1.1&content-type=text/plain

Index: cutg-160.ebuild
===================================================================
# Copyright 1999-2008 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/cutg/cutg-160.ebuild,v 1.1 2008/08/27 14:52:03 ribosome Exp $

DESCRIPTION="Codon usage tables calculated from GenBank"
LICENSE="public-domain"
HOMEPAGE="http://www.kazusa.or.jp/codon/"
SRC_URI="mirror://gentoo/${P}.tar.bz2"

SLOT="0"
# Minimal build keeps only the indexed files (if applicable) and the
# documentation. The non-indexed database is not installed.
IUSE="emboss minimal"
KEYWORDS="~amd64 ~ppc ~ppc64 ~sparc ~x86"

DEPEND="emboss? ( sci-biology/emboss )"

src_compile() {
	if use emboss; then
		mkdir CODONS
		echo
		einfo "Indexing CUTG for usage with EMBOSS."
		EMBOSS_DATA="." cutgextract -auto -directory "${S}" || die \
			"Indexing CUTG failed."
		echo
	fi
}

src_install() {
	if ! use minimal; then
		mkdir -p "${D}"usr/share/${PN}
		mv *.codon *.spsum "${D}"/usr/share/${PN} || die \
			"Installing raw CUTG database failed."
	fi
	dodoc README CODON_LABEL SPSUM_LABEL || die \
			"Failed to install documentation."
	if use emboss; then
		mkdir -p "${D}"/usr/share/EMBOSS/data/CODONS
		cd CODONS
		for file in *; do
			mv ${file} "${D}"/usr/share/EMBOSS/data/CODONS || die \
				"Installing the EMBOSS-indexed database failed."
		done
	fi
}