[gentoo-commits] repo/gentoo:master commit in: sci-biology/beast-mcmc/ - gentoo-commits

From:	James Le Cuirot <chewi@g.o>
To:	gentoo-commits@l.g.o
Subject:	[gentoo-commits] repo/gentoo:master commit in: sci-biology/beast-mcmc/
Date:	Tue, 29 Sep 2015 21:20:32
Message-Id:	`1443561592.e0e9910db038c8293a0c817be7300ef6be338ffa.chewi@gentoo`

1

commit:     e0e9910db038c8293a0c817be7300ef6be338ffa

2

Author:     William L. Thomson Jr <wlt <AT> o-sinc <DOT> com>

3

AuthorDate: Fri Sep 18 00:14:54 2015 +0000

4

Commit:     James Le Cuirot <chewi <AT> gentoo <DOT> org>

5

CommitDate: Tue Sep 29 21:19:52 2015 +0000

6

URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=e0e9910d

7

8

sci-biology/beast-mcmc: Updated dev-java/jdom slot from 1.0 -> 0 for v1

9

10

Also removed old version.

11

12

 sci-biology/beast-mcmc/Manifest                    |  1 -

13

 sci-biology/beast-mcmc/beast-mcmc-1.5.2.ebuild     | 82 ----------------------

14

 ...cmc-1.7.5.ebuild => beast-mcmc-1.7.5-r1.ebuild} |  6 +-

15

 sci-biology/beast-mcmc/beast-mcmc-9999.ebuild      |  6 +-

16

 4 files changed, 6 insertions(+), 89 deletions(-)

17

18

diff --git a/sci-biology/beast-mcmc/Manifest b/sci-biology/beast-mcmc/Manifest

19

index 7fd843d..56293f2 100644

20

--- a/sci-biology/beast-mcmc/Manifest

21

+++ b/sci-biology/beast-mcmc/Manifest

22

@@ -1,2 +1 @@

23

-DIST beast-mcmc-1.5.2.tar.bz2 38834702 SHA256 f7312c6a7a14f6b32e9701a6386ff87728574460b7861880aa2cb87290756ea1 SHA512 8549db6cb49d64eb3a97fa6478bdbabfecd44ccc6236c474a1961ec5d6fc8326072fb961035df70982a9f1c08a36572529a07b88e2d33a43fa0fd5c07df3a414 WHIRLPOOL 595f606640daa32c79373c9003ddbc1f80dcbbf01e9e9c18191328b80eb50b45ac70032027dd1efb0e256d78b88bfe1742151a16f6f333938099943a7b2cd16a

24

 DIST beast-mcmc-1.7.5.tar.xz 40516312 SHA256 905248cbf07513a0d11375656391d86e310d28f07b6fe78de6b9768eb2548f4f SHA512 9b2ab98fdc5a173e8d9fc74d27cdfd8105e9685fdcbe69a373666e77b6865b74fdd87dfa404fc4ab5bea927728d5b6b35fabd5e376a66e5f014e978952797937 WHIRLPOOL 2daded22cfd59b3b44908ce27f4ef61178f5d174de02080a7e94ba311462f482e381556d4b81bc053e33e1c4bb193d172f2c23f331659b3548f7900d3fc297d5

25

26

diff --git a/sci-biology/beast-mcmc/beast-mcmc-1.5.2.ebuild b/sci-biology/beast-mcmc/beast-mcmc-1.5.2.ebuild

27

deleted file mode 100644

28

index e356691..0000000

29

--- a/sci-biology/beast-mcmc/beast-mcmc-1.5.2.ebuild

30

+++ /dev/null

31

@@ -1,82 +0,0 @@

32

-# Copyright 1999-2009 Gentoo Foundation

33

-# Distributed under the terms of the GNU General Public License v2

34

-# $Id$

35

-

36

-EAPI="2"

37

-

38

-ESVN_REPO_URI="https://beast-mcmc.googlecode.com/svn/trunk/"

39

-

40

-WANT_ANT_TASKS="ant-junit4"

41

-EANT_GENTOO_CLASSPATH="colt,jdom-1.0,itext,junit-4,jebl,matrix-toolkits-java,commons-math-2,jdom-jaxen-1.0"

42

-JAVA_ANT_REWRITE_CLASSPATH="true"

43

-JAVA_ANT_ENCODING="latin1"

44

-JAVA_PKG_BSFIX_NAME="build.xml build_BEAST_MCMC.xml build_coalsim.xml build_development.xml build_pathogen.xml build_release.xml build_treestat.xml build_vcs.xml"

45

-

46

-#inherit java-pkg-2 java-ant-2 eutils subversion

47

-inherit java-pkg-2 java-ant-2 eutils

48

-

49

-DESCRIPTION="Bayesian MCMC of Evolution & Phylogenetics using Molecular Sequences"

50

-HOMEPAGE="https://github.com/beast-dev/beast-mcmc"

51

-#SRC_URI=""

52

-SRC_URI="mirror://gentoo/${P}.tar.bz2"

53

-

54

-LICENSE="LGPL-3"

55

-SLOT="0"

56

-KEYWORDS="~amd64 ~x86"

57

-IUSE=""

58

-

59

-# TODO: sys-cluster/mpijava

60

-COMMON_DEPS="dev-java/colt:0

61

-	dev-java/jdom:1.0

62

-	dev-java/itext:0

63

-	dev-java/junit:4

64

-	dev-java/jebl:0

65

-	dev-java/matrix-toolkits-java

66

-	dev-java/commons-math:2

67

-	dev-java/jdom-jaxen:1.0"

68

-DEPEND=">=virtual/jdk-1.5

69

-	${COMMON_DEPS}"

70

-RDEPEND=">=virtual/jre-1.5

71

-	${COMMON_DEPS}"

72

-

73

-S="${WORKDIR}/beast_release_${PV//./_}"

74

-

75

-src_prepare() {

76

-	sed -i '/BEAST_LIB/ s|$BEAST|/usr/share/beast|' "${S}"/scripts/* || die

77

-	cd lib

78

-	rm -v colt.jar junit-*.jar itext-*.jar jdom.jar jebl.jar mtj.jar commons-math-*.jar || die

79

-	java-pkg_jar-from jdom-1.0

80

-	java-pkg_jar-from colt

81

-	java-pkg_jar-from itext

82

-	java-pkg_jar-from jebl

83

-	java-pkg_jar-from matrix-toolkits-java

84

-	java-pkg_jar-from commons-math-1

85

-	java-pkg-2_src_prepare

86

-}

87

-

88

-src_compile() {

89

-	eant dist_all_BEAST -f build_BEAST_MCMC.xml \

90

-		-Dgentoo.classpath=$(java-pkg_getjars ${EANT_GENTOO_CLASSPATH}):$(for i in lib/*.jar; do echo -n "$i:"; done) || die

91

-	eant dist -f build_pathogen.xml \

92

-		-Dgentoo.classpath=$(java-pkg_getjars ${EANT_GENTOO_CLASSPATH}):$(for i in lib/*.jar; do echo -n "$i:"; done) || die

93

-}

94

-

95

-src_install() {

96

-	java-pkg_dojar build/dist/*.jar dist/*.jar

97

-

98

-	java-pkg_dolauncher beauti --jar beauti.jar --java_args '-Xms64m -Xmx256m'

99

-#	java-pkg_dolauncher beauti --main dr.app.beauti.BeautiApp --java_args '-Xms64m -Xmx256m'

100

-	java-pkg_dolauncher beast --main dr.app.beast.BeastMain --java_args '-Xms64m -Xmx256m'

101

-	java-pkg_dolauncher loganalyser --main dr.app.tools.LogAnalyser --java_args '-Xms64m -Xmx256m'

102

-	java-pkg_dolauncher logcombiner --main dr.app.tools.LogCombiner --java_args '-Xms64m -Xmx256m'

103

-	java-pkg_dolauncher treeannotator --main dr.app.tools.TreeAnnotator --java_args '-Xms64m -Xmx256m'

104

-

105

-	insinto /usr/share/${PN}

106

-	doins -r examples || die

107

-	dodoc NOTIFY doc/*.pdf

108

-}

109

-

110

-src_test() {

111

-	eant junit -f build_BEAST_MCMC.xml \

112

-		-Dgentoo.classpath=$(java-pkg_getjars ${EANT_GENTOO_CLASSPATH}):$(for i in lib/*.jar; do echo -n "$i:"; done) || die

113

-}

114

115

diff --git a/sci-biology/beast-mcmc/beast-mcmc-1.7.5.ebuild b/sci-biology/beast-mcmc/beast-mcmc-1.7.5-r1.ebuild

116

similarity index 94%

117

rename from sci-biology/beast-mcmc/beast-mcmc-1.7.5.ebuild

118

rename to sci-biology/beast-mcmc/beast-mcmc-1.7.5-r1.ebuild

119

index 5a66f59..8e59912 100644

120

--- a/sci-biology/beast-mcmc/beast-mcmc-1.7.5.ebuild

121

+++ b/sci-biology/beast-mcmc/beast-mcmc-1.7.5-r1.ebuild

122

@@ -7,7 +7,7 @@ EAPI=5

123

 ESVN_REPO_URI="https://beast-mcmc.googlecode.com/svn/trunk/"

124

125

 WANT_ANT_TASKS="ant-junit4"

126

-EANT_GENTOO_CLASSPATH="colt,jdom-1.0,itext,junit-4,jebl,matrix-toolkits-java,commons-math-2,jdom-jaxen-1.0"

127

+EANT_GENTOO_CLASSPATH="colt,jdom,itext,junit-4,jebl,matrix-toolkits-java,commons-math-2,jdom-jaxen-1.0"

128

 JAVA_ANT_REWRITE_CLASSPATH="true"

129

 JAVA_ANT_ENCODING="latin1"

130

 JAVA_PKG_BSFIX_NAME="build.xml build_BEAST_MCMC.xml build_coalsim.xml build_development.xml build_pathogen.xml build_release.xml build_treestat.xml build_vcs.xml"

131

@@ -30,7 +30,7 @@ IUSE=""

132

 # TODO: sys-cluster/mpijava

133

 COMMON_DEPS="

134

 	dev-java/colt:0

135

-	dev-java/jdom:1.0

136

+	dev-java/jdom:0

137

 	dev-java/itext:0

138

 	dev-java/junit:4

139

 	dev-java/jebl:0

140

@@ -49,7 +49,7 @@ src_prepare() {

141

 	cd lib

142

 	rm -v colt.jar junit-*.jar itext-*.jar jdom.jar mtj.jar commons-math-*.jar || die

143

 	#rm -v colt.jar junit-*.jar itext-*.jar jdom.jar jebl.jar mtj.jar commons-math-*.jar || die

144

-	java-pkg_jar-from jdom-1.0

145

+	java-pkg_jar-from jdom

146

 	java-pkg_jar-from colt

147

 	java-pkg_jar-from itext

148

 #	java-pkg_jar-from jebl

149

150

diff --git a/sci-biology/beast-mcmc/beast-mcmc-9999.ebuild b/sci-biology/beast-mcmc/beast-mcmc-9999.ebuild

151

index 768799c..7bb1f0f 100644

152

--- a/sci-biology/beast-mcmc/beast-mcmc-9999.ebuild

153

+++ b/sci-biology/beast-mcmc/beast-mcmc-9999.ebuild

154

@@ -7,7 +7,7 @@ EAPI="2"

155

 ESVN_REPO_URI="https://beast-mcmc.googlecode.com/svn/trunk/"

156

157

 WANT_ANT_TASKS="ant-junit4"

158

-EANT_GENTOO_CLASSPATH="colt,jdom-1.0,itext,junit-4,jebl,matrix-toolkits-java,commons-math-2,jdom-jaxen-1.0"

159

+EANT_GENTOO_CLASSPATH="colt,jdom,itext,junit-4,jebl,matrix-toolkits-java,commons-math-2,jdom-jaxen-1.0"

160

 JAVA_ANT_REWRITE_CLASSPATH="true"

161

 JAVA_ANT_ENCODING="latin1"

162

 JAVA_PKG_BSFIX_NAME="build.xml build_BEAST_MCMC.xml build_coalsim.xml build_development.xml build_pathogen.xml build_release.xml build_treestat.xml build_vcs.xml"

163

@@ -26,7 +26,7 @@ IUSE=""

164

165

 # TODO: sys-cluster/mpijava

166

 COMMON_DEPS="dev-java/colt:0

167

-	dev-java/jdom:1.0

168

+	dev-java/jdom:0

169

 	dev-java/itext:0

170

 	dev-java/junit:4

171

 	dev-java/jebl:0

172

@@ -44,7 +44,7 @@ src_prepare() {

173

 	sed -i '/BEAST_LIB/ s|$BEAST|/usr/share/beast|' "${S}"/scripts/* || die

174

 	cd lib

175

 	rm -v colt.jar junit-*.jar itext-*.jar jdom.jar jebl.jar mtj.jar commons-math-*.jar || die

176

-	java-pkg_jar-from jdom-1.0

177

+	java-pkg_jar-from jdom

178

 	java-pkg_jar-from colt

179

 	java-pkg_jar-from itext

180

 	java-pkg_jar-from jebl

1	commit: e0e9910db038c8293a0c817be7300ef6be338ffa
2	Author: William L. Thomson Jr <wlt <AT> o-sinc <DOT> com>
3	AuthorDate: Fri Sep 18 00:14:54 2015 +0000
4	Commit: James Le Cuirot <chewi <AT> gentoo <DOT> org>
5	CommitDate: Tue Sep 29 21:19:52 2015 +0000
6	URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=e0e9910d
7
8	sci-biology/beast-mcmc: Updated dev-java/jdom slot from 1.0 -> 0 for v1
9
10	Also removed old version.
11
12	sci-biology/beast-mcmc/Manifest \| 1 -
13	sci-biology/beast-mcmc/beast-mcmc-1.5.2.ebuild \| 82 ----------------------
14	...cmc-1.7.5.ebuild => beast-mcmc-1.7.5-r1.ebuild} \| 6 +-
15	sci-biology/beast-mcmc/beast-mcmc-9999.ebuild \| 6 +-
16	4 files changed, 6 insertions(+), 89 deletions(-)
17
18	diff --git a/sci-biology/beast-mcmc/Manifest b/sci-biology/beast-mcmc/Manifest
19	index 7fd843d..56293f2 100644
20	--- a/sci-biology/beast-mcmc/Manifest
21	+++ b/sci-biology/beast-mcmc/Manifest
22	@@ -1,2 +1 @@
23	-DIST beast-mcmc-1.5.2.tar.bz2 38834702 SHA256 f7312c6a7a14f6b32e9701a6386ff87728574460b7861880aa2cb87290756ea1 SHA512 8549db6cb49d64eb3a97fa6478bdbabfecd44ccc6236c474a1961ec5d6fc8326072fb961035df70982a9f1c08a36572529a07b88e2d33a43fa0fd5c07df3a414 WHIRLPOOL 595f606640daa32c79373c9003ddbc1f80dcbbf01e9e9c18191328b80eb50b45ac70032027dd1efb0e256d78b88bfe1742151a16f6f333938099943a7b2cd16a
24	DIST beast-mcmc-1.7.5.tar.xz 40516312 SHA256 905248cbf07513a0d11375656391d86e310d28f07b6fe78de6b9768eb2548f4f SHA512 9b2ab98fdc5a173e8d9fc74d27cdfd8105e9685fdcbe69a373666e77b6865b74fdd87dfa404fc4ab5bea927728d5b6b35fabd5e376a66e5f014e978952797937 WHIRLPOOL 2daded22cfd59b3b44908ce27f4ef61178f5d174de02080a7e94ba311462f482e381556d4b81bc053e33e1c4bb193d172f2c23f331659b3548f7900d3fc297d5
25
26	diff --git a/sci-biology/beast-mcmc/beast-mcmc-1.5.2.ebuild b/sci-biology/beast-mcmc/beast-mcmc-1.5.2.ebuild
27	deleted file mode 100644
28	index e356691..0000000
29	--- a/sci-biology/beast-mcmc/beast-mcmc-1.5.2.ebuild
30	+++ /dev/null
31	@@ -1,82 +0,0 @@
32	-# Copyright 1999-2009 Gentoo Foundation
33	-# Distributed under the terms of the GNU General Public License v2
34	-# $Id$
35	-
36	-EAPI="2"
37	-
38	-ESVN_REPO_URI="https://beast-mcmc.googlecode.com/svn/trunk/"
39	-
40	-WANT_ANT_TASKS="ant-junit4"
41	-EANT_GENTOO_CLASSPATH="colt,jdom-1.0,itext,junit-4,jebl,matrix-toolkits-java,commons-math-2,jdom-jaxen-1.0"
42	-JAVA_ANT_REWRITE_CLASSPATH="true"
43	-JAVA_ANT_ENCODING="latin1"
44	-JAVA_PKG_BSFIX_NAME="build.xml build_BEAST_MCMC.xml build_coalsim.xml build_development.xml build_pathogen.xml build_release.xml build_treestat.xml build_vcs.xml"
45	-
46	-#inherit java-pkg-2 java-ant-2 eutils subversion
47	-inherit java-pkg-2 java-ant-2 eutils
48	-
49	-DESCRIPTION="Bayesian MCMC of Evolution & Phylogenetics using Molecular Sequences"
50	-HOMEPAGE="https://github.com/beast-dev/beast-mcmc"
51	-#SRC_URI=""
52	-SRC_URI="mirror://gentoo/${P}.tar.bz2"
53	-
54	-LICENSE="LGPL-3"
55	-SLOT="0"
56	-KEYWORDS="~amd64 ~x86"
57	-IUSE=""
58	-
59	-# TODO: sys-cluster/mpijava
60	-COMMON_DEPS="dev-java/colt:0
61	- dev-java/jdom:1.0
62	- dev-java/itext:0
63	- dev-java/junit:4
64	- dev-java/jebl:0
65	- dev-java/matrix-toolkits-java
66	- dev-java/commons-math:2
67	- dev-java/jdom-jaxen:1.0"
68	-DEPEND=">=virtual/jdk-1.5
69	- ${COMMON_DEPS}"
70	-RDEPEND=">=virtual/jre-1.5
71	- ${COMMON_DEPS}"
72	-
73	-S="${WORKDIR}/beast_release_${PV//./_}"
74	-
75	-src_prepare() {
76	- sed -i '/BEAST_LIB/ s\|$BEAST\|/usr/share/beast\|' "${S}"/scripts/* \|\| die
77	- cd lib
78	- rm -v colt.jar junit-.jar itext-.jar jdom.jar jebl.jar mtj.jar commons-math-*.jar \|\| die
79	- java-pkg_jar-from jdom-1.0
80	- java-pkg_jar-from colt
81	- java-pkg_jar-from itext
82	- java-pkg_jar-from jebl
83	- java-pkg_jar-from matrix-toolkits-java
84	- java-pkg_jar-from commons-math-1
85	- java-pkg-2_src_prepare
86	-}
87	-
88	-src_compile() {
89	- eant dist_all_BEAST -f build_BEAST_MCMC.xml \
90	- -Dgentoo.classpath=$(java-pkg_getjars ${EANT_GENTOO_CLASSPATH}):$(for i in lib/*.jar; do echo -n "$i:"; done) \|\| die
91	- eant dist -f build_pathogen.xml \
92	- -Dgentoo.classpath=$(java-pkg_getjars ${EANT_GENTOO_CLASSPATH}):$(for i in lib/*.jar; do echo -n "$i:"; done) \|\| die
93	-}
94	-
95	-src_install() {
96	- java-pkg_dojar build/dist/.jar dist/.jar
97	-
98	- java-pkg_dolauncher beauti --jar beauti.jar --java_args '-Xms64m -Xmx256m'
99	-# java-pkg_dolauncher beauti --main dr.app.beauti.BeautiApp --java_args '-Xms64m -Xmx256m'
100	- java-pkg_dolauncher beast --main dr.app.beast.BeastMain --java_args '-Xms64m -Xmx256m'
101	- java-pkg_dolauncher loganalyser --main dr.app.tools.LogAnalyser --java_args '-Xms64m -Xmx256m'
102	- java-pkg_dolauncher logcombiner --main dr.app.tools.LogCombiner --java_args '-Xms64m -Xmx256m'
103	- java-pkg_dolauncher treeannotator --main dr.app.tools.TreeAnnotator --java_args '-Xms64m -Xmx256m'
104	-
105	- insinto /usr/share/${PN}
106	- doins -r examples \|\| die
107	- dodoc NOTIFY doc/*.pdf
108	-}
109	-
110	-src_test() {
111	- eant junit -f build_BEAST_MCMC.xml \
112	- -Dgentoo.classpath=$(java-pkg_getjars ${EANT_GENTOO_CLASSPATH}):$(for i in lib/*.jar; do echo -n "$i:"; done) \|\| die
113	-}
114
115	diff --git a/sci-biology/beast-mcmc/beast-mcmc-1.7.5.ebuild b/sci-biology/beast-mcmc/beast-mcmc-1.7.5-r1.ebuild
116	similarity index 94%
117	rename from sci-biology/beast-mcmc/beast-mcmc-1.7.5.ebuild
118	rename to sci-biology/beast-mcmc/beast-mcmc-1.7.5-r1.ebuild
119	index 5a66f59..8e59912 100644
120	--- a/sci-biology/beast-mcmc/beast-mcmc-1.7.5.ebuild
121	+++ b/sci-biology/beast-mcmc/beast-mcmc-1.7.5-r1.ebuild
122	@@ -7,7 +7,7 @@ EAPI=5
123	ESVN_REPO_URI="https://beast-mcmc.googlecode.com/svn/trunk/"
124
125	WANT_ANT_TASKS="ant-junit4"
126	-EANT_GENTOO_CLASSPATH="colt,jdom-1.0,itext,junit-4,jebl,matrix-toolkits-java,commons-math-2,jdom-jaxen-1.0"
127	+EANT_GENTOO_CLASSPATH="colt,jdom,itext,junit-4,jebl,matrix-toolkits-java,commons-math-2,jdom-jaxen-1.0"
128	JAVA_ANT_REWRITE_CLASSPATH="true"
129	JAVA_ANT_ENCODING="latin1"
130	JAVA_PKG_BSFIX_NAME="build.xml build_BEAST_MCMC.xml build_coalsim.xml build_development.xml build_pathogen.xml build_release.xml build_treestat.xml build_vcs.xml"
131	@@ -30,7 +30,7 @@ IUSE=""
132	# TODO: sys-cluster/mpijava
133	COMMON_DEPS="
134	dev-java/colt:0
135	- dev-java/jdom:1.0
136	+ dev-java/jdom:0
137	dev-java/itext:0
138	dev-java/junit:4
139	dev-java/jebl:0
140	@@ -49,7 +49,7 @@ src_prepare() {
141	cd lib
142	rm -v colt.jar junit-.jar itext-.jar jdom.jar mtj.jar commons-math-*.jar \|\| die
143	#rm -v colt.jar junit-.jar itext-.jar jdom.jar jebl.jar mtj.jar commons-math-*.jar \|\| die
144	- java-pkg_jar-from jdom-1.0
145	+ java-pkg_jar-from jdom
146	java-pkg_jar-from colt
147	java-pkg_jar-from itext
148	# java-pkg_jar-from jebl
149
150	diff --git a/sci-biology/beast-mcmc/beast-mcmc-9999.ebuild b/sci-biology/beast-mcmc/beast-mcmc-9999.ebuild
151	index 768799c..7bb1f0f 100644
152	--- a/sci-biology/beast-mcmc/beast-mcmc-9999.ebuild
153	+++ b/sci-biology/beast-mcmc/beast-mcmc-9999.ebuild
154	@@ -7,7 +7,7 @@ EAPI="2"
155	ESVN_REPO_URI="https://beast-mcmc.googlecode.com/svn/trunk/"
156
157	WANT_ANT_TASKS="ant-junit4"
158	-EANT_GENTOO_CLASSPATH="colt,jdom-1.0,itext,junit-4,jebl,matrix-toolkits-java,commons-math-2,jdom-jaxen-1.0"
159	+EANT_GENTOO_CLASSPATH="colt,jdom,itext,junit-4,jebl,matrix-toolkits-java,commons-math-2,jdom-jaxen-1.0"
160	JAVA_ANT_REWRITE_CLASSPATH="true"
161	JAVA_ANT_ENCODING="latin1"
162	JAVA_PKG_BSFIX_NAME="build.xml build_BEAST_MCMC.xml build_coalsim.xml build_development.xml build_pathogen.xml build_release.xml build_treestat.xml build_vcs.xml"
163	@@ -26,7 +26,7 @@ IUSE=""
164
165	# TODO: sys-cluster/mpijava
166	COMMON_DEPS="dev-java/colt:0
167	- dev-java/jdom:1.0
168	+ dev-java/jdom:0
169	dev-java/itext:0
170	dev-java/junit:4
171	dev-java/jebl:0
172	@@ -44,7 +44,7 @@ src_prepare() {
173	sed -i '/BEAST_LIB/ s\|$BEAST\|/usr/share/beast\|' "${S}"/scripts/* \|\| die
174	cd lib
175	rm -v colt.jar junit-.jar itext-.jar jdom.jar jebl.jar mtj.jar commons-math-*.jar \|\| die
176	- java-pkg_jar-from jdom-1.0
177	+ java-pkg_jar-from jdom
178	java-pkg_jar-from colt
179	java-pkg_jar-from itext
180	java-pkg_jar-from jebl

Gentoo Archives: gentoo-commits