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commit: b16e2bf244f7dca3c69b3462ed859ed258f27b84 |
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Author: Christoph Junghans <junghans <AT> gentoo <DOT> org> |
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AuthorDate: Thu Aug 23 23:12:47 2018 +0000 |
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Commit: Christoph Junghans <junghans <AT> gentoo <DOT> org> |
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CommitDate: Thu Aug 23 23:21:18 2018 +0000 |
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URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=b16e2bf2 |
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|
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sci-physics/lammps: version bump |
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|
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Package-Manager: Portage-2.3.40, Repoman-2.3.9 |
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|
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sci-physics/lammps/Manifest | 1 + |
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sci-physics/lammps/files/1080.patch | 29 +++++++ |
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sci-physics/lammps/lammps-20180822.ebuild | 129 ++++++++++++++++++++++++++++++ |
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3 files changed, 159 insertions(+) |
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|
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diff --git a/sci-physics/lammps/Manifest b/sci-physics/lammps/Manifest |
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index 8d712bc43ca..9a6f88c64df 100644 |
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--- a/sci-physics/lammps/Manifest |
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+++ b/sci-physics/lammps/Manifest |
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@@ -21,5 +21,6 @@ DIST lammps-9Jan17.tar.gz 109694893 BLAKE2B dc3af18d4a7db43d22bc4d2ed79366f7f1b7 |
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DIST lammps-patch_16Mar2018.tar.gz 91908414 BLAKE2B 0d2363ba507765d439988be9f17390889539ecf22132145f5f5f5411c6c3bf097b278b24b005374e4b176efcfbd01edb48b55076bfa41403718ad14d3905e062 SHA512 2847f9ffa368b966cba4792ebe86ea38dfc1e147647e2b738753121a09689901cea7197d3d95fa69cd065cd1d30aa37cbeffcb78b62ec85d88cd9f3ab25e25c2 |
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DIST lammps-patch_17Jan2018.tar.gz 91721592 BLAKE2B d606a5fd699f3e7aaa777065532f778e96a5b21b88de3fcce69e79c4931fea233ed1ad68f56120865061623c6e33282b9f23f927a7a9820f8f824a241e5cd823 SHA512 533ada073882e9bfc6431db62c4899005983d9efbbb043bcb50b2b0a7af2b11c411bbcc6523b2ffbd5d46531b24573f4b98a07dc757bacbc2f27bb056d7956ff |
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DIST lammps-patch_1Sep2017.tar.gz 88751184 BLAKE2B 013ba612c67767c0e11b64f0b726a81c534ceb763ac9eba9a94ef9e02166278c28cb5937162b83f783b80fef6471b0e265e45245cc5594eaa2b27ec2d5f972cf SHA512 01b56484d6e9d03c0cdc2f8100f571d6e0a354b08bda7f22176744f2724e566443514e7d8abb0571d4207709155441644d4c6dbcf17ee2a8dc4f10cb6c3e8ac1 |
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+DIST lammps-patch_22Aug2018.tar.gz 108761265 BLAKE2B fc509ccd8f5fda9fea9cf7f54b888df235b5d499a0aa3eee24bba81d35c95355cfc72ebb60f32a4adb879c0ab176659ebe634f9bbaeefd54ffc0d02329054f9f SHA512 bb1c11ef9c287b101b9f3483d6b90e55dc69a048529e5076f6f7d46e54802d0d75efc899865d462f9dd76937089e1080a126c1dc4bbb2648eda91cb38ba142b0 |
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DIST lammps-patch_22Feb2018.tar.gz 91869050 BLAKE2B 09d364b489d4402145b879ca40b290a4e33f39b6e5e4183bcccb09001002cb742917c8792f942a8b64bd992cde5c0f8dcd8b76506048f1392d33d1192aa4551d SHA512 8d4ac0f9cdcf4caa10bfb48129eec21cf31f7ce881b4cbd803c20fb638f7e55a1e645d314e172fe70eab473a4976c7f482e8c059e0c4e82527eb9438437ae146 |
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DIST lammps-patch_8Mar2018.tar.gz 91878683 BLAKE2B a4cf307769b1ac27c9cbe781a70f307d5275d2ccd4f6f77a2a21f00413ffa0af499577207afd23afd95ef6126071e8b779f6c52d50ff7117afb63161613c9f5b SHA512 57885d12e9e0ea9a6735cc2f7a2a8a9314dacbe9eaf5a46cb6d20fd7e2d0e8b0ebb3e24731eb750861973efe4d3cf0cf5a739cc9d51407f26bf3d556243c186f |
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|
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diff --git a/sci-physics/lammps/files/1080.patch b/sci-physics/lammps/files/1080.patch |
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new file mode 100644 |
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index 00000000000..85538b2a638 |
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--- /dev/null |
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+++ b/sci-physics/lammps/files/1080.patch |
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@@ -0,0 +1,29 @@ |
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+From a10bb4b96f40f3b5574b0fade2cfece8bf4c6fc9 Mon Sep 17 00:00:00 2001 |
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+From: Christoph Junghans <junghans@××××.gov> |
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+Date: Thu, 23 Aug 2018 15:02:36 -0600 |
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+Subject: [PATCH] cmake: fix link issue with --as-needed |
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+ |
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+--- |
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+ cmake/CMakeLists.txt | 5 ++++- |
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+ 1 file changed, 4 insertions(+), 1 deletion(-) |
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+ |
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+diff --git a/cmake/CMakeLists.txt b/cmake/CMakeLists.txt |
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+index 460d177c92..51997593db 100644 |
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+--- a/CMakeLists.txt |
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++++ b/CMakeLists.txt |
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+@@ -276,11 +276,14 @@ endif() |
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+ |
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+ if(PKG_MSCG OR PKG_USER-ATC OR PKG_USER-AWPMD OR PKG_USER-QUIP OR PKG_LATTE) |
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+ find_package(LAPACK) |
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+- if(NOT LAPACK_FOUND) |
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++ find_package(BLAS) |
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++ if(NOT LAPACK_FOUND OR NOT BLAS_FOUND) |
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+ enable_language(Fortran) |
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+ file(GLOB LAPACK_SOURCES ${LAMMPS_LIB_SOURCE_DIR}/linalg/*.[fF]) |
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+ add_library(linalg STATIC ${LAPACK_SOURCES}) |
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+ set(LAPACK_LIBRARIES linalg) |
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++ else() |
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++ list(APPEND LAPACK_LIBRARIES ${BLAS_LIBRARIES}) |
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+ endif() |
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+ endif() |
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+ |
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|
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diff --git a/sci-physics/lammps/lammps-20180822.ebuild b/sci-physics/lammps/lammps-20180822.ebuild |
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new file mode 100644 |
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index 00000000000..dfa18f8327b |
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--- /dev/null |
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+++ b/sci-physics/lammps/lammps-20180822.ebuild |
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@@ -0,0 +1,129 @@ |
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+# Copyright 1999-2018 Gentoo Foundation |
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+# Distributed under the terms of the GNU General Public License v2 |
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+ |
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+EAPI=6 |
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+ |
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+PYTHON_COMPAT=( python{2_7,3_4,3_5,3_6} ) |
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+ |
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+inherit cmake-utils fortran-2 python-r1 |
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+ |
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+convert_month() { |
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+ local months=( "" Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec ) |
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+ echo ${months[${1#0}]} |
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+} |
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+ |
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+MY_PV="patch_$((10#${PV:6:2}))$(convert_month ${PV:4:2})${PV:0:4}" |
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+MY_P="${PN}-${MY_PV}" |
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+ |
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+DESCRIPTION="Large-scale Atomic/Molecular Massively Parallel Simulator" |
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+HOMEPAGE="http://lammps.sandia.gov/" |
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+SRC_URI="https://github.com/lammps/lammps/archive/${MY_PV}.tar.gz -> ${MY_P}.tar.gz" |
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+ |
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+LICENSE="GPL-2" |
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+SLOT="0" |
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+KEYWORDS="~amd64 ~x86" |
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+IUSE="cuda examples gzip lammps-memalign mpi netcdf python test" |
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+ |
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+DEPEND=" |
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+ app-arch/gzip |
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+ media-libs/libpng:0 |
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+ sys-libs/zlib |
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+ mpi? ( |
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+ virtual/mpi |
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+ sci-libs/hdf5[mpi] |
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+ ) |
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+ python? ( ${PYTHON_DEPS} ) |
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+ sci-libs/voro++ |
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+ virtual/blas |
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+ virtual/lapack |
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+ sci-libs/fftw:3.0 |
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+ netcdf? ( sci-libs/netcdf ) |
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+ cuda? ( >=dev-util/nvidia-cuda-toolkit-4.2.9-r1 ) |
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+ dev-cpp/eigen:3 |
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+ " |
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+RDEPEND="${DEPEND}" |
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+ |
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+REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )" |
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+ |
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+# https://github.com/lammps/lammps/pull/1080 |
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+PATCHES=( "${FILESDIR}/1080.patch" ) |
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+ |
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+S="${WORKDIR}/${MY_P}/cmake" |
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+ |
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+src_configure() { |
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+ local mycmakeargs=( |
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+ -DCMAKE_INSTALL_SYSCONFDIR="${EPREFIX}/etc" |
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+ -DBUILD_SHARED_LIBS=ON |
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+ -DBUILD_MPI=$(usex mpi) |
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+ -DPKG_GPU=$(usex cuda) |
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+ -DGPU_API=CUDA |
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+ -DENABLE_TESTING=$(usex test) |
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+ -DPKG_ASPHERE=ON |
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+ -DPKG_BODY=ON |
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+ -DPKG_CLASS2=ON |
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+ -DPKG_COLLOID=ON |
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+ -DPKG_COMPRESS=ON |
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+ -DPKG_CORESHELL=ON |
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+ -DPKG_DIPOLE=ON |
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+ -DPKG_GRANULAR=ON |
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+ -DPKG_KSPACE=ON |
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+ -DFFT=FFTW3 |
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+ -DPKG_MANYBODY=ON |
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+ -DPKG_MC=ON |
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+ -DPKG_MEAM=ON |
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+ -DPKG_MISC=ON |
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+ -DPKG_MOLECULE=ON |
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+ -DPKG_PERI=ON |
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+ -DPKG_QEQ=ON |
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+ -DPKG_REAX=ON |
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+ -DPKG_REPLICA=ON |
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+ -DPKG_RIGID=ON |
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+ -DPKG_SHOCK=ON |
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+ -DPKG_SNAP=ON |
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+ -DPKG_SRD=ON |
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+ -DPKG_PYTHON=ON |
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+ -DPKG_MPIIO=$(usex mpi) |
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+ -DPKG_VORONOI=ON |
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+ -DPKG_USER-ATC=ON |
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+ -DPKG_USER-AWPMD=ON |
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+ -DPKG_USER-CGDNA=ON |
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+ -DPKG_USER-CGSDK=ON |
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+ -DPKG_USER-COLVARS=ON |
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+ -DPKG_USER-DIFFRACTION=ON |
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+ -DPKG_USER-DPD=ON |
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+ -DPKG_USER-DRUDE=ON |
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+ -DPKG_USER-EFF=ON |
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+ -DPKG_USER-FEP=ON |
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+ -DPKG_USER-H5MD=$(usex mpi) |
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+ -DPKG_USER-LB=$(usex mpi) |
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+ -DPKG_USER-MANIFOLD=ON |
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+ -DPKG_USER-MEAMC=ON |
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+ -DPKG_USER-MGPT=ON |
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+ -DPKG_USER-MISC=ON |
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+ -DPKG_USER-MOLFILE=ON |
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+ -DPKG_USER-NETCDF=$(usex netcdf) |
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+ -DPKG_USER-PHONON=ON |
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+ -DPKG_USER-QTB=ON |
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+ -DPKG_USER-REAXC=ON |
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+ -DPKG_USER-SMD=ON |
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+ -DPKG_USER-SMTBQ=ON |
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+ -DPKG_USER-SPH=ON |
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+ -DPKG_USER-TALLY=ON |
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+ ) |
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+ cmake-utils_src_configure |
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+} |
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+ |
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+src_install() { |
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+ cmake-utils_src_install |
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+ |
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+ # Install python script. |
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+ use python && python_foreach_impl python_domodule "${S}"/../python/lammps.py |
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+ |
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+ if use examples; then |
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+ for d in examples bench; do |
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+ local LAMMPS_EXAMPLES="/usr/share/${PN}/${d}" |
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+ insinto "${LAMMPS_EXAMPLES}" |
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+ doins -r "${S}"/../${d}/* |
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+ done |
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+ fi |
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+} |