From: | "Justin Lecher (jlec)" <jlec@g.o> |
---|---|
To: | gentoo-commits@l.g.o |
Subject: | [gentoo-commits] gentoo-x86 commit in sci-chemistry/refmac: ChangeLog refmac-5.6.0077.ebuild refmac-5.6.0075.ebuild |
Date: | Thu, 27 May 2010 08:50:46 |
Message-Id: | 20100527085035.464352CF38@corvid.gentoo.org |
1 | jlec 10/05/27 08:50:35 |
2 | |
3 | Modified: ChangeLog |
4 | Added: refmac-5.6.0077.ebuild |
5 | Removed: refmac-5.6.0075.ebuild |
6 | Log: |
7 | Version Bump |
8 | (Portage version: 2.2_rc67/cvs/Linux x86_64) |
9 | |
10 | Revision Changes Path |
11 | 1.8 sci-chemistry/refmac/ChangeLog |
12 | |
13 | file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/refmac/ChangeLog?rev=1.8&view=markup |
14 | plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/refmac/ChangeLog?rev=1.8&content-type=text/plain |
15 | diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/refmac/ChangeLog?r1=1.7&r2=1.8 |
16 | |
17 | Index: ChangeLog |
18 | =================================================================== |
19 | RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/ChangeLog,v |
20 | retrieving revision 1.7 |
21 | retrieving revision 1.8 |
22 | diff -u -r1.7 -r1.8 |
23 | --- ChangeLog 18 May 2010 16:17:56 -0000 1.7 |
24 | +++ ChangeLog 27 May 2010 08:50:35 -0000 1.8 |
25 | @@ -1,6 +1,12 @@ |
26 | # ChangeLog for sci-chemistry/refmac |
27 | # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 |
28 | -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/ChangeLog,v 1.7 2010/05/18 16:17:56 jlec Exp $ |
29 | +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/ChangeLog,v 1.8 2010/05/27 08:50:35 jlec Exp $ |
30 | + |
31 | +*refmac-5.6.0077 (27 May 2010) |
32 | + |
33 | + 27 May 2010; Justin Lecher <jlec@g.o> -refmac-5.6.0075.ebuild, |
34 | + +refmac-5.6.0077.ebuild: |
35 | + Version Bump |
36 | |
37 | *refmac-5.6.0076 (18 May 2010) |
38 | |
39 | |
40 | |
41 | |
42 | 1.1 sci-chemistry/refmac/refmac-5.6.0077.ebuild |
43 | |
44 | file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/refmac/refmac-5.6.0077.ebuild?rev=1.1&view=markup |
45 | plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/refmac/refmac-5.6.0077.ebuild?rev=1.1&content-type=text/plain |
46 | |
47 | Index: refmac-5.6.0077.ebuild |
48 | =================================================================== |
49 | # Copyright 1999-2010 Gentoo Foundation |
50 | # Distributed under the terms of the GNU General Public License v2 |
51 | # $Header: /var/cvsroot/gentoo-x86/sci-chemistry/refmac/refmac-5.6.0077.ebuild,v 1.1 2010/05/27 08:50:35 jlec Exp $ |
52 | |
53 | EAPI="2" |
54 | |
55 | inherit fortran base toolchain-funcs versionator |
56 | |
57 | MY_PV="$(get_version_component_range 1-2)_source_v${PV}" |
58 | |
59 | DESCRIPTION="Macromolecular crystallographic refinement program" |
60 | HOMEPAGE="http://www.ysbl.york.ac.uk/~garib/refmac/" |
61 | SRC_URI="${HOMEPAGE}data/refmac_experimental/${PN}${MY_PV}.tar.gz |
62 | test? ( http://dev.gentooexperimental.org/~jlec/distfiles/test-framework.tar.gz )" |
63 | |
64 | SLOT="0" |
65 | LICENSE="ccp4" |
66 | KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" |
67 | IUSE="test" |
68 | |
69 | RDEPEND=" |
70 | sci-libs/ccp4-libs |
71 | sci-libs/mmdb |
72 | virtual/blas |
73 | virtual/lapack" |
74 | DEPEND="${RDEPEND}" |
75 | |
76 | S="${WORKDIR}" |
77 | |
78 | PATCHES=( |
79 | "${FILESDIR}"/5.6.0075-allow-dynamic-linking.patch |
80 | ) |
81 | |
82 | src_prepare() { |
83 | base_src_prepare |
84 | use test && epatch "${FILESDIR}"/5.5-test.log.patch |
85 | } |
86 | |
87 | src_compile() { |
88 | emake \ |
89 | FC=$(tc-getFC) \ |
90 | CC=$(tc-getCC) \ |
91 | CXX=$(tc-getCXX) \ |
92 | COPTIM="${CFLAGS}" \ |
93 | FOPTIM="${FFLAGS:- -O2}" \ |
94 | VERSION="" \ |
95 | XFFLAGS="-fno-second-underscore" \ |
96 | LLIBCCP="-lccp4f -lccp4c -lccif -lmmdb -lstdc++" \ |
97 | LLIBLAPACK="$(pkg-config --libs lapack blas)" \ |
98 | || die |
99 | } |
100 | |
101 | src_test() { |
102 | einfo "Starting tests ..." |
103 | export PATH="${WORKDIR}/test-framework/scripts:${S}:${PATH}" |
104 | export CCP4_TEST="${WORKDIR}"/test-framework |
105 | export CCP4_SCR="${T}" |
106 | ln -sf refmac "${S}"/refmac5 |
107 | sed '/^ANISOU/d' -i ${CCP4_TEST}/data/pdb/1vr7.pdb |
108 | ccp4-run-thorough-tests -v test_refmac5 || die |
109 | } |
110 | |
111 | src_install() { |
112 | for i in refmac libcheck; do |
113 | exeinto /usr/libexec/ccp4/bin/ |
114 | doexe ${i} || die |
115 | dosym ../libexec/ccp4/bin/${i} /usr/bin/${i} |
116 | done |
117 | dosym refmac /usr/bin/refmac5 || die |
118 | } |