From: | "Justin Lecher (jlec)" <jlec@g.o> |
---|---|
To: | gentoo-commits@l.g.o |
Subject: | [gentoo-commits] gentoo-x86 commit in sci-chemistry/psipred: metadata.xml ChangeLog psipred-2.6.1.ebuild |
Date: | Sat, 27 Feb 2010 10:01:55 |
Message-Id: | E1NlJUf-0004rA-48@stork.gentoo.org |
1 | jlec 10/02/27 10:01:53 |
2 | |
3 | Added: metadata.xml ChangeLog psipred-2.6.1.ebuild |
4 | Log: |
5 | Imported from sci overlay |
6 | (Portage version: 2.2_rc63/cvs/Linux x86_64) |
7 | |
8 | Revision Changes Path |
9 | 1.1 sci-chemistry/psipred/metadata.xml |
10 | |
11 | file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/psipred/metadata.xml?rev=1.1&view=markup |
12 | plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/psipred/metadata.xml?rev=1.1&content-type=text/plain |
13 | |
14 | Index: metadata.xml |
15 | =================================================================== |
16 | <?xml version="1.0" encoding="UTF-8"?> |
17 | <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
18 | <pkgmetadata> |
19 | <herd>sci</herd> |
20 | <maintainer> |
21 | <email>jlec@g.o</email> |
22 | </maintainer> |
23 | </pkgmetadata> |
24 | |
25 | |
26 | |
27 | 1.1 sci-chemistry/psipred/ChangeLog |
28 | |
29 | file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/psipred/ChangeLog?rev=1.1&view=markup |
30 | plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/psipred/ChangeLog?rev=1.1&content-type=text/plain |
31 | |
32 | Index: ChangeLog |
33 | =================================================================== |
34 | # ChangeLog for sci-chemistry/psipred |
35 | # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 |
36 | # $Header: /var/cvsroot/gentoo-x86/sci-chemistry/psipred/ChangeLog,v 1.1 2010/02/27 10:01:52 jlec Exp $ |
37 | |
38 | *psipred-2.6.1 (27 Feb 2010) |
39 | |
40 | 27 Feb 2010; Justin Lecher (jlec) <jlec@g.o> |
41 | +files/2.6.1-Makefile.patch, +files/2.6.1-path.patch, |
42 | +psipred-2.6.1.ebuild, +metadata.xml: |
43 | Imported from sci overlay |
44 | |
45 | |
46 | |
47 | |
48 | 1.1 sci-chemistry/psipred/psipred-2.6.1.ebuild |
49 | |
50 | file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/psipred/psipred-2.6.1.ebuild?rev=1.1&view=markup |
51 | plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/psipred/psipred-2.6.1.ebuild?rev=1.1&content-type=text/plain |
52 | |
53 | Index: psipred-2.6.1.ebuild |
54 | =================================================================== |
55 | # Copyright 1999-2010 Gentoo Foundation |
56 | # Distributed under the terms of the GNU General Public License v2 |
57 | # $Header: /var/cvsroot/gentoo-x86/sci-chemistry/psipred/psipred-2.6.1.ebuild,v 1.1 2010/02/27 10:01:52 jlec Exp $ |
58 | |
59 | EAPI="3" |
60 | |
61 | inherit eutils prefix toolchain-funcs versionator |
62 | |
63 | MY_P="${PN}$(delete_all_version_separators)" |
64 | |
65 | DESCRIPTION="Protein Secondary Structure Prediction" |
66 | HOMEPAGE="http://bioinf.cs.ucl.ac.uk/psipred/" |
67 | SRC_URI="http://bioinf.cs.ucl.ac.uk/downloads/${PN}/${MY_P}.tar.gz" |
68 | |
69 | LICENSE="psipred" |
70 | SLOT="0" |
71 | KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" |
72 | IUSE="" |
73 | |
74 | RDEPEND=" |
75 | sci-biology/ncbi-tools |
76 | sci-biology/ncbi-tools++" |
77 | |
78 | S="${WORKDIR}" |
79 | |
80 | src_prepare() { |
81 | epatch "${FILESDIR}"/${PV}-Makefile.patch |
82 | epatch "${FILESDIR}"/${PV}-path.patch |
83 | eprefixify runpsipred* |
84 | } |
85 | |
86 | src_compile() { |
87 | emake -C src CC=$(tc-getCC) || die "emake failed" |
88 | } |
89 | |
90 | src_install() { |
91 | emake -C src DESTDIR="${D}" install || die "installation failed" |
92 | dobin runpsipred* || die |
93 | insinto /usr/share/${PN} |
94 | doins -r data || die "failed to install data" |
95 | dodoc README || die "nothing to read" |
96 | } |
97 | |
98 | pkg_postinst() { |
99 | elog "Please use the update_blastdb.pl in order to" |
100 | elog "maintain your own local blastdb" |
101 | } |