[gentoo-commits] gentoo-x86 commit in sci-biology/ncbi-tools++: ChangeLog ncbi-tools++-2010.06.15-r1.ebuild ncbi-tools++-2010.06.15.ebuild ncbi-tools++-2009.05.15-r6.ebuild

[Justin Lecher (jlec)]

jlec        11/05/04 19:06:17

  Modified:             ChangeLog ncbi-tools++-2010.06.15.ebuild
  Added:                ncbi-tools++-2010.06.15-r1.ebuild
  Removed:              ncbi-tools++-2009.05.15-r6.ebuild
  Log:
  Fix for asneeded, #297193; removed old, #312921
  
  (Portage version: 2.2.0_alpha30/cvs/Linux x86_64)

Revision  Changes    Path
1.19                 sci-biology/ncbi-tools++/ChangeLog

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/ncbi-tools++/ChangeLog?rev=1.19&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/ncbi-tools++/ChangeLog?rev=1.19&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/ncbi-tools++/ChangeLog?r1=1.18&r2=1.19

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools++/ChangeLog,v
retrieving revision 1.18
retrieving revision 1.19
diff -u -r1.18 -r1.19
--- ChangeLog	2 May 2011 09:43:44 -0000	1.18
+++ ChangeLog	4 May 2011 19:06:17 -0000	1.19
@@ -1,6 +1,15 @@
 # ChangeLog for sci-biology/ncbi-tools++
 # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools++/ChangeLog,v 1.18 2011/05/02 09:43:44 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools++/ChangeLog,v 1.19 2011/05/04 19:06:17 jlec Exp $
+
+*ncbi-tools++-2010.06.15-r1 (04 May 2011)
+
+  04 May 2011; Justin Lecher <jlec@g.o>
+  -ncbi-tools++-2009.05.15-r6.ebuild, ncbi-tools++-2010.06.15.ebuild,
+  +ncbi-tools++-2010.06.15-r1.ebuild,
+  +files/ncbi-tools++-2010.06.15-asneeded.patch,
+  +files/ncbi-tools++-2010.06.15-asneeded-ng.patch:
+  Fix for asneeded, #297193; removed old, #312921
 
   02 May 2011; Justin Lecher <jlec@g.o> ncbi-tools++-2010.06.15.ebuild,
   +files/ncbi-tools++-2010.06.15-gcc46.patch:



1.3                  sci-biology/ncbi-tools++/ncbi-tools++-2010.06.15.ebuild

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/ncbi-tools++/ncbi-tools++-2010.06.15.ebuild?rev=1.3&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/ncbi-tools++/ncbi-tools++-2010.06.15.ebuild?rev=1.3&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/ncbi-tools++/ncbi-tools++-2010.06.15.ebuild?r1=1.2&r2=1.3

Index: ncbi-tools++-2010.06.15.ebuild
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools++/ncbi-tools++-2010.06.15.ebuild,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- ncbi-tools++-2010.06.15.ebuild	2 May 2011 09:43:44 -0000	1.2
+++ ncbi-tools++-2010.06.15.ebuild	4 May 2011 19:06:17 -0000	1.3
@@ -1,6 +1,6 @@
 # Copyright 1999-2011 Gentoo Foundation
 # Distributed under the terms of the GNU General Public License v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools++/ncbi-tools++-2010.06.15.ebuild,v 1.2 2011/05/02 09:43:44 jlec Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools++/ncbi-tools++-2010.06.15.ebuild,v 1.3 2011/05/04 19:06:17 jlec Exp $
 
 EAPI="3"
 
@@ -19,7 +19,8 @@
 IUSE="sqlite mysql"
 KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
 
-DEPEND="sqlite? ( dev-db/sqlite:3 )
+DEPEND="
+	sqlite? ( dev-db/sqlite:3 )
 	mysql? ( virtual/mysql )"
 RDEPEND="${DEPEND}"
 



1.1                  sci-biology/ncbi-tools++/ncbi-tools++-2010.06.15-r1.ebuild

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/ncbi-tools++/ncbi-tools++-2010.06.15-r1.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/ncbi-tools++/ncbi-tools++-2010.06.15-r1.ebuild?rev=1.1&content-type=text/plain

Index: ncbi-tools++-2010.06.15-r1.ebuild
===================================================================
# Copyright 1999-2011 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/ncbi-tools++/ncbi-tools++-2010.06.15-r1.ebuild,v 1.1 2011/05/04 19:06:17 jlec Exp $

EAPI="3"

inherit eutils flag-o-matic multilib toolchain-funcs

MY_TAG="Jun_15_2010"
MY_Y="${MY_TAG/*_/}"
MY_P="ncbi_cxx--${MY_TAG}"

DESCRIPTION="NCBI C++ Toolkit, including NCBI BLAST+"
HOMEPAGE="http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=toolkit"
SRC_URI="ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools++/${MY_Y}/${MY_TAG}/${MY_P}.tar.gz"

LICENSE="public-domain"
SLOT="0"
IUSE="sqlite mysql"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"

DEPEND="
	sqlite? ( dev-db/sqlite:3 )
	mysql? ( virtual/mysql )"
RDEPEND="${DEPEND}"

S="${WORKDIR}/${MY_P}"

src_prepare() {
#	filter-ldflags -Wl,--as-needed
#	append-ldflags -Wl,--no-undefined
	sed -i -e 's/-print-file-name=libstdc++.a//' \
		-e '/sed/ s/\([gO]\[0-9\]\)\*/\1\\+/' \
		src/build-system/configure || die
	epatch \
		"${FILESDIR}"/${P}-gcc46.patch \
		"${FILESDIR}"/${P}-asneeded.patch
}

src_configure() {
	tc-export CXX CC
# conf check for sqlite and mysql
	"${S}"/configure --without-debug \
		--with-bin-release \
		--with-bincopy \
		--without-static \
		--with-dll \
		--with-mt \
		--prefix="${ED}"/usr \
		--libdir="${ED}"/usr/$(get_libdir)/${PN} \
		|| die
}

src_compile() {
	emake all_r -C GCC*-Release*/build || die
}

src_install() {
	emake install || die
	# File collisions with sci-biology/ncbi-tools
	rm -f "${ED}"/usr/bin/{asn2asn,rpsblast,test_regexp}

	echo "LDPATH=${EPREFIX}/usr/$(get_libdir)/${PN}" > ${S}/99${PN}
	doenvd "${S}/99${PN}"
}

pkg_postinst() {
	einfo 'Please run "source /etc/profile" before using this package in the current shell.'
}