[gentoo-commits] gentoo-x86 commit in sci-chemistry/pymol-plugins-cealign: metadata.xml ChangeLog pymol-plugins-cealign-0.9.ebuild

[Justin Lecher (jlec)]

jlec        10/02/18 22:00:45

  Added:                metadata.xml ChangeLog
                        pymol-plugins-cealign-0.9.ebuild
  Log:
  Moved in from sci overlay
  (Portage version: 2.2_rc62/cvs/Linux x86_64)

Revision  Changes    Path
1.1                  sci-chemistry/pymol-plugins-cealign/metadata.xml

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/pymol-plugins-cealign/metadata.xml?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/pymol-plugins-cealign/metadata.xml?rev=1.1&content-type=text/plain

Index: metadata.xml
===================================================================
<?xml version="1.0" encoding="UTF-8"?>
<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
<pkgmetadata>
<herd>sci</herd>
<maintainer>
  <email>jlec@g.o</email>
</maintainer>
</pkgmetadata>



1.1                  sci-chemistry/pymol-plugins-cealign/ChangeLog

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/pymol-plugins-cealign/ChangeLog?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/pymol-plugins-cealign/ChangeLog?rev=1.1&content-type=text/plain

Index: ChangeLog
===================================================================
# ChangeLog for sci-chemistry/pymol-plugins-cealign
# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol-plugins-cealign/ChangeLog,v 1.1 2010/02/18 22:00:44 jlec Exp $

*pymol-plugins-cealign-0.9 (18 Feb 2010)

  18 Feb 2010; Justin Lecher (jlec) <jlec@g.o>
  +pymol-plugins-cealign-0.9.ebuild, +metadata.xml:
  New addition, for further reading:
  Shindyalov IN, Bourne PE. Protein structure alignment by incremental
  combinatorial extension (CE) of the optimal path. Protein Eng. 1998
  Sep;11(9):739-47. PMID: 9796821 [PubMed - indexed for MEDLINE]




1.1                  sci-chemistry/pymol-plugins-cealign/pymol-plugins-cealign-0.9.ebuild

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/pymol-plugins-cealign/pymol-plugins-cealign-0.9.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-chemistry/pymol-plugins-cealign/pymol-plugins-cealign-0.9.ebuild?rev=1.1&content-type=text/plain

Index: pymol-plugins-cealign-0.9.ebuild
===================================================================
# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol-plugins-cealign/pymol-plugins-cealign-0.9.ebuild,v 1.1 2010/02/18 22:00:44 jlec Exp $

EAPI="3"

SUPPORT_PYTHON_ABIS="1"

inherit distutils

DESCRIPTION="The CE algorithm is a fast and accurate protein structure alignment algorithm."
HOMEPAGE="http://www.pymolwiki.org/index.php/Cealign"
SRC_URI="http://www.pymolwiki.org/images/0/03/Cealign-${PV}.zip"

SLOT="0"
LICENSE="BSD"
KEYWORDS="~x86 ~amd64 ~amd64-linux"
IUSE=""

DEPEND="
	dev-python/numpy
	~sci-chemistry/pymol-1.2.2"
RDEPEND=""
RESTRICT_PYTHON_ABIS="2.4 3.*"

S=${WORKDIR}/cealign-0.9

src_prepare() {
	python_copy_sources
}

src_install(){
	mtype=$(uname -m)

	distutils_src_install

	installation() {
		insinto $(python_get_sitedir)/cealign
		doins qkabsch.py cealign.py || die
	}
	python_execute_function -s installation

	cat >> "${T}"/pymolrc <<- EOF
	run "${EPREFIX}/$(python_get_sitedir -f)/cealign/qkabsch.py"
	run "${EPREFIX}/$(python_get_sitedir -f)/cealign/cealign.py"
	EOF

	insinto ${PYMOL_PATH}
	doins "${T}"/pymolrc || die

	dodoc CHANGES doc/cealign.pdf || die
}