[gentoo-commits] proj/sci:master commit in: sci-biology/vcftools/

[Marius Brehler]

commit:     cec254823f198e90b0c51750704aab40e9e0c64c
Author:     David Seifert <soap <AT> gentoo <DOT> org>
AuthorDate: Sun Sep 25 09:44:52 2016 +0000
Commit:     Marius Brehler <marbre <AT> linux <DOT> sungazer <DOT> de>
CommitDate: Sun Sep 25 09:44:52 2016 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=cec25482

sci-biology/vcftools: remove, in main tree

 sci-biology/vcftools/metadata.xml           | 11 ------
 sci-biology/vcftools/vcftools-0.1.14.ebuild | 55 -----------------------------
 2 files changed, 66 deletions(-)

diff --git a/sci-biology/vcftools/metadata.xml b/sci-biology/vcftools/metadata.xml
deleted file mode 100644
index 77f6f92..0000000
--- a/sci-biology/vcftools/metadata.xml
+++ /dev/null
@@ -1,11 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-  <maintainer type="project">
-    <email>sci-biology@g.o</email>
-    <name>Gentoo Biology Project</name>
-  </maintainer>
-  <upstream>
-    <remote-id type="sourceforge">vcftools</remote-id>
-  </upstream>
-</pkgmetadata>

diff --git a/sci-biology/vcftools/vcftools-0.1.14.ebuild b/sci-biology/vcftools/vcftools-0.1.14.ebuild
deleted file mode 100644
index 0e792f8..0000000
--- a/sci-biology/vcftools/vcftools-0.1.14.ebuild
+++ /dev/null
@@ -1,55 +0,0 @@
-# Copyright 1999-2016 Gentoo Foundation
-# Distributed under the terms of the GNU General Public License v2
-# $Id$
-
-EAPI=5
-
-PERL_EXPORT_PHASE_FUNCTIONS=no
-inherit perl-module eutils toolchain-funcs autotools
-
-MY_P="${PN}_${PV}"
-
-DESCRIPTION="Tools for working with VCF (Variant Call Format) files"
-HOMEPAGE="https://vcftools.github.io
-	http://vcftools.sourceforge.net"
-SRC_URI="https://github.com/vcftools/vcftools/archive/vcftools-vcftools-v0.1.14-14-g2543f81.tar.gz"
-#SRC_URI="https://codeload.github.com/vcftools/vcftools/legacy.tar.gz/master -> ${P}.tar.gz"
-#SRC_URI="mirror://sourceforge/${PN}/${MY_P}.tar.gz"
-
-LICENSE="LGPL-3"
-SLOT="0"
-KEYWORDS="~x86 ~amd64"
-IUSE="lapack"
-
-RDEPEND="lapack? ( virtual/lapack )"
-DEPEND="${RDEPEND}
-	virtual/pkgconfig"
-
-S="${WORKDIR}"/vcftools-vcftools-2543f81
-#S="${WORKDIR}/${MY_P}"
-
-src_prepare() {
-	# epatch "${FILESDIR}"/${P}-buildsystem.patch
-	tc-export CXX PKG_CONFIG
-	eautoreconf
-}
-
-src_configure(){
-	econf --enable-pca # --with-pmdir=DIR   install Perl modules in DIR
-}
-
-#src_compile() {
-#	local myconf
-#	use lapack && myconf="VCFTOOLS_PCA=1"
-#	emake -C cpp ${myconf}
-#}
-
-src_install(){
-	perl_set_version
-	dobin src/cpp/"${PN}"
-	doman src/cpp/"${PN}".1
-	insinto "${VENDOR_LIB}"
-	doins src/perl/*.pm
-	dobin src/perl/{fill,vcf}-*
-	dodoc README.md
-}