| 1 |
commit: 7a4cef5af00c759a893ac46a71e11142e88515b1 |
| 2 |
Author: Justin Lecher <jlec <AT> gentoo <DOT> org> |
| 3 |
AuthorDate: Wed Feb 4 08:36:50 2015 +0000 |
| 4 |
Commit: Justin Lecher <jlec <AT> gentoo <DOT> org> |
| 5 |
CommitDate: Wed Feb 4 08:36:50 2015 +0000 |
| 6 |
URL: http://sources.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=7a4cef5a |
| 7 |
|
| 8 |
Merge branch 'SoapZaNet-master' |
| 9 |
|
| 10 |
* SoapZaNet-master: (34 commits) |
| 11 |
sci-biology/embassy-meme: Bump eclass, Drop old |
| 12 |
empty package |
| 13 |
empty package |
| 14 |
sci-biology/embassy-mse: Bump eclass, drop old |
| 15 |
sci-biology/embassy-iprscan: Bump eclass, Drop old |
| 16 |
sci-biology/embassy-phylipnew: Bump eclass, drop old |
| 17 |
sci-biology/embassy-hmmer: Bump eclass, Drop old |
| 18 |
sci-biology/embassy-signature: Bump eclass, drop old |
| 19 |
sci-biology/embassy-esim4: Bump eclass, Drop old |
| 20 |
sci-biology/embassy-structure: Bump eclass, drop old |
| 21 |
sci-biology/embassy-emnu: Bump eclass, Drop old |
| 22 |
sci-biology/embassy-topo: Bump eclass, drop old |
| 23 |
sci-biology/embassy-domsearch: Bump eclass, Drop old |
| 24 |
sci-biology/embassy-vienna: Bump eclass, drop old |
| 25 |
sci-biology/embassy-domalign: Bump eclass, Drop old |
| 26 |
sci-biology/embassy-domainatrix: Bump eclass, Drop old |
| 27 |
sci-biology/embassy-clustalomega: Bump eclass |
| 28 |
sci-biology/embassy-cbstools: Bump eclass, Drop old |
| 29 |
sci-biology/embassy: Drop old |
| 30 |
sci-biology/emboss: Drop old |
| 31 |
... |
| 32 |
|
| 33 |
|
| 34 |
eclass/{emboss.eclass => emboss-r1.eclass} | 89 ++--- |
| 35 |
profiles/package.mask | 35 +- |
| 36 |
sci-biology/embassy-cbstools/ChangeLog | 7 +- |
| 37 |
sci-biology/embassy-cbstools/Manifest | 2 +- |
| 38 |
...r3.ebuild => embassy-cbstools-1.0.0.650.ebuild} | 6 +- |
| 39 |
.../files/embassy-cbstools-1.0.0-r2.patch | 347 ------------------ |
| 40 |
...bassy-cbstools-1.0.0.650_fix-build-system.patch | 97 +++++ |
| 41 |
sci-biology/embassy-cbstools/metadata.xml | 2 +- |
| 42 |
.../ChangeLog | 8 +- |
| 43 |
sci-biology/embassy-clustalomega/Manifest | 1 + |
| 44 |
.../embassy-clustalomega-1.1.0.ebuild | 13 + |
| 45 |
...bassy-clustalomega-1.1.0_fix-build-system.patch | 90 +++++ |
| 46 |
.../{trf => embassy-clustalomega}/metadata.xml | 0 |
| 47 |
sci-biology/embassy-domainatrix/ChangeLog | 7 +- |
| 48 |
sci-biology/embassy-domainatrix/Manifest | 2 +- |
| 49 |
...6.ebuild => embassy-domainatrix-0.1.650.ebuild} | 6 +- |
| 50 |
.../files/embassy-domainatrix-0.1.0-r5.patch | 346 ------------------ |
| 51 |
...assy-domainatrix-0.1.650_fix-build-system.patch | 91 +++++ |
| 52 |
sci-biology/embassy-domainatrix/metadata.xml | 2 +- |
| 53 |
sci-biology/embassy-domalign/ChangeLog | 7 +- |
| 54 |
sci-biology/embassy-domalign/Manifest | 2 +- |
| 55 |
...0-r5.ebuild => embassy-domalign-0.1.650.ebuild} | 6 +- |
| 56 |
.../files/embassy-domalign-0.1.0-r5.patch | 346 ------------------ |
| 57 |
...embassy-domalign-0.1.650_fix-build-system.patch | 92 +++++ |
| 58 |
sci-biology/embassy-domalign/metadata.xml | 2 +- |
| 59 |
sci-biology/embassy-domsearch/ChangeLog | 7 +- |
| 60 |
sci-biology/embassy-domsearch/Manifest | 2 +- |
| 61 |
...-r5.ebuild => embassy-domsearch-0.1.650.ebuild} | 6 +- |
| 62 |
.../files/embassy-domsearch-0.1.0-r5.patch | 346 ------------------ |
| 63 |
...mbassy-domsearch-0.1.650_fix-build-system.patch | 91 +++++ |
| 64 |
sci-biology/embassy-domsearch/metadata.xml | 2 +- |
| 65 |
sci-biology/embassy-emnu/ChangeLog | 7 +- |
| 66 |
sci-biology/embassy-emnu/Manifest | 2 +- |
| 67 |
...1.05-r7.ebuild => embassy-emnu-1.05.650.ebuild} | 8 +- |
| 68 |
.../embassy-emnu/files/embassy-emnu-1.05-r7.patch | 359 ------------------- |
| 69 |
.../embassy-emnu-1.05.650_fix-build-system.patch | 127 +++++++ |
| 70 |
sci-biology/embassy-emnu/metadata.xml | 2 +- |
| 71 |
sci-biology/embassy-esim4/ChangeLog | 7 +- |
| 72 |
sci-biology/embassy-esim4/Manifest | 2 +- |
| 73 |
....0-r7.ebuild => embassy-esim4-1.0.0.650.ebuild} | 6 +- |
| 74 |
.../files/embassy-esim4-1.0.0-r7.patch | 345 ------------------ |
| 75 |
.../embassy-esim4-1.0.0.650_fix-build-system.patch | 97 +++++ |
| 76 |
sci-biology/embassy-esim4/metadata.xml | 2 +- |
| 77 |
sci-biology/embassy-hmmer/ChangeLog | 7 +- |
| 78 |
sci-biology/embassy-hmmer/Manifest | 2 +- |
| 79 |
....2-r4.ebuild => embassy-hmmer-2.3.2.650.ebuild} | 8 +- |
| 80 |
.../files/embassy-hmmer-2.3.2-r4.patch | 346 ------------------ |
| 81 |
.../embassy-hmmer-2.3.2.650_fix-build-system.patch | 90 +++++ |
| 82 |
sci-biology/embassy-hmmer/metadata.xml | 2 +- |
| 83 |
sci-biology/embassy-iprscan/ChangeLog | 7 +- |
| 84 |
sci-biology/embassy-iprscan/Manifest | 2 +- |
| 85 |
...-r2.ebuild => embassy-iprscan-4.3.1.650.ebuild} | 6 +- |
| 86 |
.../files/embassy-iprscan-4.3.1-r2.patch | 349 ------------------ |
| 87 |
...mbassy-iprscan-4.3.1.650_fix-build-system.patch | 97 +++++ |
| 88 |
sci-biology/embassy-iprscan/metadata.xml | 2 +- |
| 89 |
.../{embassy-memenew => embassy-meme}/ChangeLog | 8 +- |
| 90 |
sci-biology/embassy-meme/Manifest | 1 + |
| 91 |
.../embassy-meme/embassy-meme-4.7.650.ebuild | 13 + |
| 92 |
.../embassy-meme-4.7.650_fix-build-system.patch | 90 +++++ |
| 93 |
sci-biology/{trf => embassy-meme}/metadata.xml | 0 |
| 94 |
.../files/embassy-memenew-4.0.0-r1.patch | 346 ------------------ |
| 95 |
sci-biology/embassy-memenew/metadata.xml | 5 - |
| 96 |
sci-biology/embassy-mira/ChangeLog | 50 --- |
| 97 |
.../embassy-mira/files/embassy-mira-2.8.2-r2.patch | 345 ------------------ |
| 98 |
sci-biology/embassy-mira/metadata.xml | 5 - |
| 99 |
sci-biology/embassy-mse/ChangeLog | 6 +- |
| 100 |
sci-biology/embassy-mse/Manifest | 2 +- |
| 101 |
...e-3.0.0.ebuild => embassy-mse-3.0.0.650.ebuild} | 12 +- |
| 102 |
.../embassy-mse-3.0.0.650_fix-build-system.patch | 133 +++++++ |
| 103 |
.../embassy-mse/files/embassy-mse-3.0.0.patch | 398 --------------------- |
| 104 |
sci-biology/embassy-mse/metadata.xml | 2 +- |
| 105 |
sci-biology/embassy-phylipnew/ChangeLog | 7 +- |
| 106 |
sci-biology/embassy-phylipnew/Manifest | 2 +- |
| 107 |
...69.ebuild => embassy-phylipnew-3.69.650.ebuild} | 6 +- |
| 108 |
...bassy-phylipnew-3.69.650_fix-build-system.patch | 98 +++++ |
| 109 |
.../files/embassy-phylipnew-3.69.patch | 346 ------------------ |
| 110 |
sci-biology/embassy-phylipnew/metadata.xml | 2 +- |
| 111 |
sci-biology/embassy-signature/ChangeLog | 7 +- |
| 112 |
sci-biology/embassy-signature/Manifest | 2 +- |
| 113 |
...-r5.ebuild => embassy-signature-0.1.650.ebuild} | 6 +- |
| 114 |
.../files/embassy-signature-0.1.0-r5.patch | 346 ------------------ |
| 115 |
...mbassy-signature-0.1.650_fix-build-system.patch | 90 +++++ |
| 116 |
sci-biology/embassy-signature/metadata.xml | 2 +- |
| 117 |
sci-biology/embassy-structure/ChangeLog | 7 +- |
| 118 |
sci-biology/embassy-structure/Manifest | 2 +- |
| 119 |
...-r5.ebuild => embassy-structure-0.1.650.ebuild} | 6 +- |
| 120 |
.../files/embassy-structure-0.1.0-r5.patch | 347 ------------------ |
| 121 |
...mbassy-structure-0.1.650_fix-build-system.patch | 90 +++++ |
| 122 |
sci-biology/embassy-structure/metadata.xml | 2 +- |
| 123 |
sci-biology/embassy-topo/ChangeLog | 6 +- |
| 124 |
sci-biology/embassy-topo/Manifest | 2 +- |
| 125 |
...po-2.0.0.ebuild => embassy-topo-2.0.650.ebuild} | 6 +- |
| 126 |
.../embassy-topo/files/embassy-topo-2.0.0.patch | 346 ------------------ |
| 127 |
.../embassy-topo-2.0.650_fix-build-system.patch | 97 +++++ |
| 128 |
sci-biology/embassy-topo/metadata.xml | 2 +- |
| 129 |
sci-biology/embassy-vienna/ChangeLog | 7 +- |
| 130 |
sci-biology/embassy-vienna/Manifest | 2 +- |
| 131 |
...2-r2.ebuild => embassy-vienna-1.7.2.650.ebuild} | 6 +- |
| 132 |
.../files/embassy-vienna-1.7.2-r2.patch | 355 ------------------ |
| 133 |
...embassy-vienna-1.7.2.650_fix-build-system.patch | 98 +++++ |
| 134 |
sci-biology/embassy-vienna/metadata.xml | 2 +- |
| 135 |
sci-biology/embassy/ChangeLog | 6 +- |
| 136 |
sci-biology/embassy/embassy-6.3.1.ebuild | 43 --- |
| 137 |
sci-biology/embassy/embassy-6.6.0.ebuild | 30 ++ |
| 138 |
sci-biology/embassy/metadata.xml | 2 +- |
| 139 |
sci-biology/emboss/ChangeLog | 8 +- |
| 140 |
sci-biology/emboss/Manifest | 4 - |
| 141 |
sci-biology/emboss/emboss-6.3.1_p4-r2.ebuild | 94 ----- |
| 142 |
sci-biology/emboss/emboss-6.5.7.ebuild | 79 ---- |
| 143 |
sci-biology/emboss/emboss-6.6.0.ebuild | 62 +--- |
| 144 |
.../{emboss-README.Gentoo-2 => README.gentoo} | 4 +- |
| 145 |
sci-biology/emboss/files/ax_lib_mysql.m4 | 147 -------- |
| 146 |
.../emboss/files/emboss-6.3.1_p4-r2_Makefile.patch | 47 --- |
| 147 |
.../emboss-6.3.1_p4-r2_compilations-paths.patch | 315 ---------------- |
| 148 |
.../emboss/files/emboss-6.3.1_p4-r2_libtool.patch | 18 - |
| 149 |
.../emboss/files/emboss-6.3.1_p4-r2_plcol.patch | 112 ------ |
| 150 |
...mboss-6.3.1_p4-r2_rename_plwid_to_plwidth.patch | 13 - |
| 151 |
.../files/emboss-6.6.0_FORTIFY_SOURCE-fix.patch | 11 + |
| 152 |
.../files/emboss-6.6.0_fix-build-system.patch | 368 +++++++++++++++++++ |
| 153 |
sci-biology/emboss/files/emboss-6.6.0_plcol.patch | 112 ------ |
| 154 |
.../files/emboss-6.6.0_plplot-declarations.patch | 61 ++++ |
| 155 |
.../emboss-6.6.0_qa-implicit-declarations.patch | 74 ++++ |
| 156 |
sci-biology/emboss/metadata.xml | 4 +- |
| 157 |
sci-biology/fastdnaml/fastdnaml-1.2.2_p10.ebuild | 2 +- |
| 158 |
.../fastx_toolkit/fastx_toolkit-0.0.14.ebuild | 11 + |
| 159 |
125 files changed, 2422 insertions(+), 6860 deletions(-) |
Archives