[gentoo-commits] gentoo-x86 commit in sci-biology/infernal: ChangeLog infernal-1.0.2-r1.ebuild infernal-1.0.ebuild

[Kacper Kowalik (xarthisius)]

xarthisius    10/11/04 10:06:22

  Modified:             ChangeLog
  Added:                infernal-1.0.2-r1.ebuild
  Removed:              infernal-1.0.ebuild
  Log:
  Fix parallel build wrt bug 311919. Thanks to Myckel Habets <m.e.j.habets@××××××××××××××××××.nl> for patch and report. Fix buffer overflow wrt bug 338179 and respect LDFLAGS wrt bug 338177. Thanks to Diego Elio Pettenò for the reports. Drop old.
  
  (Portage version: 2.1.9.24/cvs/Linux x86_64)

Revision  Changes    Path
1.8                  sci-biology/infernal/ChangeLog

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/infernal/ChangeLog?rev=1.8&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/infernal/ChangeLog?rev=1.8&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/infernal/ChangeLog?r1=1.7&r2=1.8

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/infernal/ChangeLog,v
retrieving revision 1.7
retrieving revision 1.8
diff -u -r1.7 -r1.8
--- ChangeLog	5 Apr 2010 12:14:58 -0000	1.7
+++ ChangeLog	4 Nov 2010 10:06:22 -0000	1.8
@@ -1,6 +1,17 @@
 # ChangeLog for sci-biology/infernal
 # Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/infernal/ChangeLog,v 1.7 2010/04/05 12:14:58 phajdan.jr Exp $
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/infernal/ChangeLog,v 1.8 2010/11/04 10:06:22 xarthisius Exp $
+
+*infernal-1.0.2-r1 (04 Nov 2010)
+
+  04 Nov 2010; Kacper Kowalik <xarthisius@g.o> -infernal-1.0.ebuild,
+  +infernal-1.0.2-r1.ebuild, +files/infernal-1.0.2-ldflags.patch,
+  +files/infernal-1.0.2-overflows.patch,
+  +files/infernal-1.0.2-parallel-build.patch:
+  Fix parallel build wrt bug 311919. Thanks to Myckel Habets
+  <m.e.j.habets@××××××××××××××××××.nl> for patch and report. Fix buffer
+  overflow wrt bug 338179 and respect LDFLAGS wrt bug 338177. Thanks to
+  Diego Elio Pettenò for the reports. Drop old.
 
   05 Apr 2010; Pawel Hajdan jr <phajdan.jr@g.o>
   infernal-1.0.2.ebuild:



1.1                  sci-biology/infernal/infernal-1.0.2-r1.ebuild

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/infernal/infernal-1.0.2-r1.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/infernal/infernal-1.0.2-r1.ebuild?rev=1.1&content-type=text/plain

Index: infernal-1.0.2-r1.ebuild
===================================================================
# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/infernal/infernal-1.0.2-r1.ebuild,v 1.1 2010/11/04 10:06:22 xarthisius Exp $

EAPI="2"

inherit eutils

DESCRIPTION="Inference of RNA alignments"
HOMEPAGE="http://infernal.janelia.org/"
SRC_URI="ftp://selab.janelia.org/pub/software/${PN}/${P}.tar.gz"

LICENSE="GPL-3"
SLOT="0"
IUSE="mpi"
KEYWORDS="~amd64 ~x86"

DEPEND="mpi? ( virtual/mpi )"
RDEPEND="${DEPEND}"

src_prepare() {
	epatch "${FILESDIR}"/${P}-parallel-build.patch \
		"${FILESDIR}"/${P}-overflows.patch \
		"${FILESDIR}"/${P}-ldflags.patch
}

src_configure() {
	econf --prefix="${D}/usr" \
		$(use_enable mpi)
}

src_install() {
	emake install || die
	(cd documentation/manpages; for i in *; do newman ${i} ${i/.man/.1}; done)
	insinto /usr/share/${PN}
	doins -r benchmarks tutorial intro matrices || die
	dodoc 00README* Userguide.pdf documentation/release-notes/* || die
}