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jlec 12/06/23 11:21:23 |
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|
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Modified: ChangeLog metadata.xml |
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Added: molden-4.8-r2.ebuild molden-5.0.ebuild |
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Removed: molden-4.8-r1.ebuild molden-4.8.ebuild |
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molden-4.7-r1.ebuild |
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Log: |
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sci-chemistry/molden: Fix buffer overflow, #342907; Version Bump, #355741; Fix build failures, #358917, #423015; drop old |
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|
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(Portage version: 2.2.0_alpha111/cvs/Linux x86_64) |
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|
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Revision Changes Path |
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1.39 sci-chemistry/molden/ChangeLog |
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|
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/molden/ChangeLog?rev=1.39&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/molden/ChangeLog?rev=1.39&content-type=text/plain |
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diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/molden/ChangeLog?r1=1.38&r2=1.39 |
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|
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Index: ChangeLog |
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=================================================================== |
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RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/molden/ChangeLog,v |
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retrieving revision 1.38 |
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retrieving revision 1.39 |
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diff -u -r1.38 -r1.39 |
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--- ChangeLog 21 Jun 2011 16:03:06 -0000 1.38 |
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+++ ChangeLog 23 Jun 2012 11:21:23 -0000 1.39 |
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@@ -1,6 +1,16 @@ |
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# ChangeLog for sci-chemistry/molden |
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-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 |
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-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/molden/ChangeLog,v 1.38 2011/06/21 16:03:06 jlec Exp $ |
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+# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2 |
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+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/molden/ChangeLog,v 1.39 2012/06/23 11:21:23 jlec Exp $ |
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+ |
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+*molden-5.0 (23 Jun 2012) |
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+*molden-4.8-r2 (23 Jun 2012) |
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+ |
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+ 23 Jun 2012; Justin Lecher <jlec@g.o> -molden-4.7-r1.ebuild, |
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+ -molden-4.8.ebuild, -molden-4.8-r1.ebuild, +molden-4.8-r2.ebuild, |
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+ files/molden-4.8-overflow.patch, +molden-5.0.ebuild, |
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+ +files/molden-5.0-ambfor.patch, metadata.xml: |
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+ Fix buffer overflow, #342907; Version Bump, #355741; Fix build failures, |
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+ #358917, #423015; drop old |
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|
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21 Jun 2011; Justin Lecher <jlec@g.o> molden-4.7.ebuild, |
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molden-4.7-r1.ebuild, molden-4.8.ebuild, molden-4.8-r1.ebuild: |
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|
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|
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|
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1.5 sci-chemistry/molden/metadata.xml |
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|
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/molden/metadata.xml?rev=1.5&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/molden/metadata.xml?rev=1.5&content-type=text/plain |
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diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/molden/metadata.xml?r1=1.4&r2=1.5 |
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|
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Index: metadata.xml |
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=================================================================== |
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RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/molden/metadata.xml,v |
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retrieving revision 1.4 |
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retrieving revision 1.5 |
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diff -u -r1.4 -r1.5 |
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--- metadata.xml 20 Sep 2006 05:08:59 -0000 1.4 |
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+++ metadata.xml 23 Jun 2012 11:21:23 -0000 1.5 |
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@@ -1,5 +1,5 @@ |
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<?xml version="1.0" encoding="UTF-8"?> |
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<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
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<pkgmetadata> |
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-<herd>sci-chemistry</herd> |
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+ <herd>sci-chemistry</herd> |
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</pkgmetadata> |
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|
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|
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|
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1.1 sci-chemistry/molden/molden-4.8-r2.ebuild |
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|
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/molden/molden-4.8-r2.ebuild?rev=1.1&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/molden/molden-4.8-r2.ebuild?rev=1.1&content-type=text/plain |
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|
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Index: molden-4.8-r2.ebuild |
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=================================================================== |
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# Copyright 1999-2012 Gentoo Foundation |
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# Distributed under the terms of the GNU General Public License v2 |
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# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/molden/molden-4.8-r2.ebuild,v 1.1 2012/06/23 11:21:23 jlec Exp $ |
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|
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EAPI=4 |
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|
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inherit eutils fortran-2 flag-o-matic toolchain-funcs |
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|
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MY_P="${PN}${PV}" |
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|
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DESCRIPTION="Display molecular density from GAMESS-UK, GAMESS-US, GAUSSIAN and Mopac/Ampac" |
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HOMEPAGE="http://www.cmbi.kun.nl/~schaft/molden/molden.html" |
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SRC_URI="ftp://ftp.cmbi.kun.nl/pub/molgraph/${PN}/${MY_P}.tar.gz" |
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|
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LICENSE="as-is" |
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SLOT="0" |
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KEYWORDS="~alpha ~amd64 ~ia64 ~x86" |
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IUSE="opengl" |
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|
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RDEPEND=" |
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virtual/fortran |
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x11-libs/libXmu |
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opengl? ( |
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media-libs/freeglut |
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virtual/opengl )" |
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DEPEND="${RDEPEND} |
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x11-misc/gccmakedep |
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app-editors/vim" |
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# vim provides ex, which the build system uses (surf/Makefile, at least) |
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|
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S="${WORKDIR}/${MY_P}" |
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|
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src_prepare() { |
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epatch "${FILESDIR}"/${P}-ambfor.patch \ |
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"${FILESDIR}"/${P}-overflow.patch \ |
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"${FILESDIR}"/${P}-ldflags.patch \ |
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"${FILESDIR}"/${PN}-4.7-implicit-dec.patch |
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sed \ |
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-e 's:makedepend:gccmakedep:g' \ |
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-e "s:/usr/include/sgidefs.h::g" \ |
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-i surf/Makefile || die |
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sed 's:shell g77:shell $(FC):g' -i makefile || die |
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} |
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|
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src_compile() { |
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# Use -mieee on alpha, according to the Makefile |
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use alpha && append-flags -mieee |
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|
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# Honor CC, CFLAGS, FC, and FFLAGS from environment; |
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# unfortunately a bash bug prevents us from doing typeset and |
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# assignment on the same line. |
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typeset -a args |
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args=( |
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CC="$(tc-getCC) ${CFLAGS}" \ |
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FC="$(tc-getFC)" \ |
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LDR="$(tc-getFC)" \ |
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FFLAGS="${FFLAGS}" ) |
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|
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einfo "Building Molden..." |
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emake -j1 "${args[@]}" |
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if use opengl ; then |
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einfo "Building Molden OpenGL helper..." |
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emake -j1 "${args[@]}" moldenogl |
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fi |
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} |
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|
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src_install() { |
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dobin ${PN} g${PN} |
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if use opengl ; then |
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dobin ${PN}ogl |
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fi |
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|
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dodoc HISTORY README REGISTER |
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cd doc |
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uncompress * && dodoc * |
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} |
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|
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|
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|
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1.1 sci-chemistry/molden/molden-5.0.ebuild |
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|
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/molden/molden-5.0.ebuild?rev=1.1&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/molden/molden-5.0.ebuild?rev=1.1&content-type=text/plain |
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|
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Index: molden-5.0.ebuild |
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=================================================================== |
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# Copyright 1999-2012 Gentoo Foundation |
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# Distributed under the terms of the GNU General Public License v2 |
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# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/molden/molden-5.0.ebuild,v 1.1 2012/06/23 11:21:23 jlec Exp $ |
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|
170 |
EAPI=4 |
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|
172 |
inherit eutils fortran-2 flag-o-matic toolchain-funcs |
173 |
|
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MY_P="${PN}${PV}" |
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|
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DESCRIPTION="Display molecular density from GAMESS-UK, GAMESS-US, GAUSSIAN and Mopac/Ampac" |
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HOMEPAGE="http://www.cmbi.kun.nl/~schaft/molden/molden.html" |
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SRC_URI="ftp://ftp.cmbi.kun.nl/pub/molgraph/${PN}/${MY_P}.tar.gz" |
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|
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LICENSE="as-is" |
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SLOT="0" |
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KEYWORDS="~alpha ~amd64 ~ia64 ~x86" |
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IUSE="opengl" |
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|
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RDEPEND=" |
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virtual/fortran |
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x11-libs/libXmu |
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opengl? ( |
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media-libs/freeglut |
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virtual/opengl )" |
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DEPEND="${RDEPEND} |
192 |
x11-misc/gccmakedep |
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app-editors/vim" |
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# vim provides ex, which the build system uses (surf/Makefile, at least) |
195 |
|
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S="${WORKDIR}/${MY_P}" |
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|
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src_prepare() { |
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epatch \ |
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"${FILESDIR}"/${P}-ambfor.patch \ |
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"${FILESDIR}"/${PN}-4.8-overflow.patch \ |
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"${FILESDIR}"/${PN}-4.8-ldflags.patch \ |
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"${FILESDIR}"/${PN}-4.7-implicit-dec.patch |
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sed \ |
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-e 's:makedepend:gccmakedep:g' \ |
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-e "s:/usr/include/sgidefs.h::g" \ |
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-i surf/Makefile || die |
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sed 's:shell g77:shell $(FC):g' -i makefile || die |
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} |
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|
211 |
src_compile() { |
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# Use -mieee on alpha, according to the Makefile |
213 |
use alpha && append-flags -mieee |
214 |
|
215 |
# Honor CC, CFLAGS, FC, and FFLAGS from environment; |
216 |
# unfortunately a bash bug prevents us from doing typeset and |
217 |
# assignment on the same line. |
218 |
typeset -a args |
219 |
args=( |
220 |
CC="$(tc-getCC) ${CFLAGS}" \ |
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FC="$(tc-getFC)" \ |
222 |
LDR="$(tc-getFC)" \ |
223 |
FFLAGS="${FFLAGS}" ) |
224 |
|
225 |
einfo "Building Molden..." |
226 |
emake -j1 "${args[@]}" |
227 |
if use opengl ; then |
228 |
einfo "Building Molden OpenGL helper..." |
229 |
emake -j1 "${args[@]}" moldenogl |
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fi |
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} |
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|
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src_install() { |
234 |
dobin ${PN} g${PN} |
235 |
if use opengl ; then |
236 |
dobin ${PN}ogl |
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fi |
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|
239 |
dodoc HISTORY README REGISTER |
240 |
cd doc |
241 |
uncompress * && dodoc * |
242 |
} |