Gentoo Archives: gentoo-commits

From: "Justin Lecher (jlec)" <jlec@g.o>
To: gentoo-commits@l.g.o
Subject: [gentoo-commits] gentoo-x86 commit in sci-biology/tree-puzzle: ChangeLog tree-puzzle-5.2.ebuild
Date: Wed, 01 Aug 2012 15:41:40
Message-Id: 20120801154129.608552004C@flycatcher.gentoo.org
1 jlec 12/08/01 15:41:29
2
3 Modified: ChangeLog tree-puzzle-5.2.ebuild
4 Log:
5 sci-biology/tree-puzzle: Mask stupid test, which fails due to precision reached depending on optimization used at compile time, #297646; fix move to EAPI=4, #429354
6
7 (Portage version: 2.2.0_alpha120/cvs/Linux x86_64)
8
9 Revision Changes Path
10 1.19 sci-biology/tree-puzzle/ChangeLog
11
12 file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/tree-puzzle/ChangeLog?rev=1.19&view=markup
13 plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/tree-puzzle/ChangeLog?rev=1.19&content-type=text/plain
14 diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/tree-puzzle/ChangeLog?r1=1.18&r2=1.19
15
16 Index: ChangeLog
17 ===================================================================
18 RCS file: /var/cvsroot/gentoo-x86/sci-biology/tree-puzzle/ChangeLog,v
19 retrieving revision 1.18
20 retrieving revision 1.19
21 diff -u -r1.18 -r1.19
22 --- ChangeLog 24 May 2012 10:28:51 -0000 1.18
23 +++ ChangeLog 1 Aug 2012 15:41:29 -0000 1.19
24 @@ -1,6 +1,11 @@
25 # ChangeLog for sci-biology/tree-puzzle
26 # Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
27 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/tree-puzzle/ChangeLog,v 1.18 2012/05/24 10:28:51 jlec Exp $
28 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/tree-puzzle/ChangeLog,v 1.19 2012/08/01 15:41:29 jlec Exp $
29 +
30 + 01 Aug 2012; Justin Lecher <jlec@g.o> tree-puzzle-5.2.ebuild,
31 + +files/tree-puzzle-impl-dec.patch:
32 + Mask stupid test, which fails due to precision reached depending on
33 + optimization used at compile time, #297646; fix move to EAPI=4, #429354
34
35 24 May 2012; Justin Lecher <jlec@g.o> tree-puzzle-5.2.ebuild:
36 Corrected dep from sys-cluster/lam-mpi to virtual/mpi, #415765
37
38
39
40 1.14 sci-biology/tree-puzzle/tree-puzzle-5.2.ebuild
41
42 file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/tree-puzzle/tree-puzzle-5.2.ebuild?rev=1.14&view=markup
43 plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/tree-puzzle/tree-puzzle-5.2.ebuild?rev=1.14&content-type=text/plain
44 diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/tree-puzzle/tree-puzzle-5.2.ebuild?r1=1.13&r2=1.14
45
46 Index: tree-puzzle-5.2.ebuild
47 ===================================================================
48 RCS file: /var/cvsroot/gentoo-x86/sci-biology/tree-puzzle/tree-puzzle-5.2.ebuild,v
49 retrieving revision 1.13
50 retrieving revision 1.14
51 diff -u -r1.13 -r1.14
52 --- tree-puzzle-5.2.ebuild 24 May 2012 10:28:51 -0000 1.13
53 +++ tree-puzzle-5.2.ebuild 1 Aug 2012 15:41:29 -0000 1.14
54 @@ -1,10 +1,10 @@
55 # Copyright 1999-2012 Gentoo Foundation
56 # Distributed under the terms of the GNU General Public License v2
57 -# $Header: /var/cvsroot/gentoo-x86/sci-biology/tree-puzzle/tree-puzzle-5.2.ebuild,v 1.13 2012/05/24 10:28:51 jlec Exp $
58 +# $Header: /var/cvsroot/gentoo-x86/sci-biology/tree-puzzle/tree-puzzle-5.2.ebuild,v 1.14 2012/08/01 15:41:29 jlec Exp $
59
60 EAPI=4
61
62 -inherit toolchain-funcs
63 +inherit eutils toolchain-funcs
64
65 DESCRIPTION="Maximum likelihood analysis for nucleotide, amino acid, and two-state data"
66 HOMEPAGE="http://www.tree-puzzle.de"
67 @@ -18,6 +18,8 @@
68 DEPEND="mpi? ( virtual/mpi )"
69 RDEPEND="${DEPEND}"
70
71 +RESTRICT="test"
72 +
73 pkg_setup () {
74 use mpi && [ $(tc-getCC) = icc ] && die "The parallelized version of tree-puzzle cannot be compiled using icc.
75 Either disable the \"mpi\" USE flag to compile only the non-parallelized
76 @@ -25,6 +27,12 @@
77 }
78
79 src_prepare() {
80 + epatch "${FILESDIR}"/${PN}-impl-dec.patch
81 +}
82 +
83 +src_configure() {
84 + default
85 +
86 if ! use mpi; then
87 sed \
88 -e 's:bin_PROGRAMS = puzzle$(EXEEXT) ppuzzle:bin_PROGRAMS = puzzle :' \