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commit: 6d8df48b8581b1c92254ef9e80fa94f6445a1932 |
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Author: Justin Lecher <jlec <AT> gentoo <DOT> org> |
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AuthorDate: Mon Sep 21 13:52:53 2015 +0000 |
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Commit: Justin Lecher <jlec <AT> gentoo <DOT> org> |
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CommitDate: Mon Sep 21 13:52:53 2015 +0000 |
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URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=6d8df48b |
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|
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Drop obsolete package Sources unavailable |
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|
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Signed-off-by: Justin Lecher <jlec <AT> gentoo.org> |
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|
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sci-biology/tigr-closure/ChangeLog | 13 ----- |
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sci-biology/tigr-closure/metadata.xml | 9 --- |
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.../tigr-closure/tigr-closure-20080106.ebuild | 65 ---------------------- |
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3 files changed, 87 deletions(-) |
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|
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diff --git a/sci-biology/tigr-closure/ChangeLog b/sci-biology/tigr-closure/ChangeLog |
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deleted file mode 100644 |
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index 4f76625..0000000 |
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--- a/sci-biology/tigr-closure/ChangeLog |
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+++ /dev/null |
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@@ -1,13 +0,0 @@ |
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-# ChangeLog for sci-biology/tigr-closure |
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-# Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2 |
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-# $Id$ |
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- |
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- 10 Jan 2015; Justin Lecher <jlec@g.o> tigr-closure-20080106.ebuild: |
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- Some QA, add license |
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- |
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-*tigr-closure-20080106 (07 Jan 2015) |
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- |
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- 07 Jan 2015; Martin Mokrejs <mmokrejs@×××××××××××××××.cz> |
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- +tigr-closure-20080106.ebuild, +metadata.xml: |
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- initial ebuild |
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- |
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|
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diff --git a/sci-biology/tigr-closure/metadata.xml b/sci-biology/tigr-closure/metadata.xml |
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deleted file mode 100644 |
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index 2bc8930..0000000 |
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--- a/sci-biology/tigr-closure/metadata.xml |
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+++ /dev/null |
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@@ -1,9 +0,0 @@ |
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-<?xml version="1.0" encoding="UTF-8"?> |
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-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
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-<pkgmetadata> |
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- <herd>sci-biology</herd> |
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- <maintainer> |
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- <email>mmokrejs@×××××××××××××××.cz</email> |
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- <name>Martin Mokrejs</name> |
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- </maintainer> |
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-</pkgmetadata> |
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|
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diff --git a/sci-biology/tigr-closure/tigr-closure-20080106.ebuild b/sci-biology/tigr-closure/tigr-closure-20080106.ebuild |
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deleted file mode 100644 |
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index 3a6f422..0000000 |
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--- a/sci-biology/tigr-closure/tigr-closure-20080106.ebuild |
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+++ /dev/null |
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@@ -1,65 +0,0 @@ |
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-# Copyright 1999-2015 Gentoo Foundation |
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-# Distributed under the terms of the GNU General Public License v2 |
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-# $Id$ |
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- |
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-EAPI=5 |
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- |
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-inherit perl-module |
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- |
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-DESCRIPTION="TIGR closure tools for the assembly/finishing stage of DNA sequencing projects" |
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-HOMEPAGE="http://tigr-closure.sourceforge.net/" |
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-# http://tigr-closure.svn.sourceforge.net/tigr-closure/ |
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-SRC_URI="tigr-closure-svn-20080106.tar.gz" |
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- |
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-LICENSE="all-rights-reserved" |
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-SLOT="0" |
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-KEYWORDS="" |
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-IUSE="" |
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- |
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-DEPEND="dev-lang/perl" |
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-RDEPEND="" |
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- |
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-src_compile() { |
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- |
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- # Closure Work Order Processing (CWP - CLOVER) |
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- # clover and oats |
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- cd "${WORKDIR}"/CWPSystem/trunk/ || die |
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- # needs TIGR/EUIDService.pm in PERL paths |
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- emake dist |
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- # how to install the files from install/ ? |
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- cd ../.. || die |
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- |
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- # |
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- cd ScaffoldMgmt/trunk || die |
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- emake dist |
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- # FIXME: unpack the .tar file into image during src_install() |
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- cd ../.. || die |
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- |
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- # awfull |
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- cd ClosureQC/trunk/ || die |
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- mkdir sandbox || die |
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- ${SANDBOX}="${WORKDIR}"/sandbox |
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- # have ./src/, ./doc, ./install, ./test/work/drivers, ./test/work/getqc, ./test/tmp |
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- cd test || die |
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- # ... |
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- cd ../../.. || die |
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- |
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- # |
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- cd ClosureReactionSystem/trunk || die |
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- emake BUILD=true |
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- cd ../.. || die |
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- |
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- # some Java servlet? |
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- cd AserverConsoleEJB3Hibernate || die |
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- # huh? |
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- cd ../.. || die |
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-} |
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- |
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-src_install() { |
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- cd "${WORKDIR}"/SequenceTiling || die |
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- dobin trunk/src/*.pl |
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- cd trunk/src/TIGR/SequenceTiling/ || die |
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- myinst="DESTDIR=${D}" |
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- perl-module_src_install |
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- # |
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-} |