1 |
commit: 8414705ae146126e4745b343cd33e71a405cb166 |
2 |
Author: David Seifert <soap <AT> gentoo <DOT> org> |
3 |
AuthorDate: Sat Sep 2 11:07:41 2017 +0000 |
4 |
Commit: David Seifert <soap <AT> gentoo <DOT> org> |
5 |
CommitDate: Sat Sep 2 12:37:06 2017 +0000 |
6 |
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=8414705a |
7 |
|
8 |
sci-libs/htslib: Remove old |
9 |
|
10 |
Package-Manager: Portage-2.3.8, Repoman-2.3.3 |
11 |
Closes: https://github.com/gentoo/gentoo/pull/5593 |
12 |
|
13 |
sci-libs/htslib/Manifest | 5 ----- |
14 |
sci-libs/htslib/htslib-1.0.ebuild | 44 ------------------------------------- |
15 |
sci-libs/htslib/htslib-1.1.ebuild | 42 ----------------------------------- |
16 |
sci-libs/htslib/htslib-1.2.1.ebuild | 20 ----------------- |
17 |
sci-libs/htslib/htslib-1.3.1.ebuild | 20 ----------------- |
18 |
sci-libs/htslib/htslib-1.3.ebuild | 20 ----------------- |
19 |
6 files changed, 151 deletions(-) |
20 |
|
21 |
diff --git a/sci-libs/htslib/Manifest b/sci-libs/htslib/Manifest |
22 |
index 728098018cc..fbf89b440a9 100644 |
23 |
--- a/sci-libs/htslib/Manifest |
24 |
+++ b/sci-libs/htslib/Manifest |
25 |
@@ -1,6 +1 @@ |
26 |
-DIST htslib-1.0.tar.bz2 842174 SHA256 3d53fb081fafd930cadfee6f950faacc1993a0f4a9fa329fc897865fc6b331bc SHA512 aee7080a31c3fe5bd1fe4a16102da4aef7d415fd022781c1a5bdc1316ca50f8fcabbb95a39adc867e4eb5ac2d8ed63ab15ceafcd768e840d2593282916313507 WHIRLPOOL 512f4a95e98129151fef34fb90294138bc0aec40d5c2345d15d49ded02810c4663b8ff65726ced9f0d9ceb300295da066f6025d2b1966224937fc9ff58f2b58f |
27 |
-DIST htslib-1.1.tar.bz2 844870 SHA256 204e894074d9a864d27b607fda19f6240c5da351bb61bfc6c94beaa8790e4d58 SHA512 cde0b01583035f139203b8e9884dc97846bdf02fbb6dd2af74d0829270c2141ac490d0ca3ece4f9afd9d66d6af235452d3e94bbe0ea6e1a8625405735a813271 WHIRLPOOL 56e986cd7ee29d2d680ef55fd9128d4e43bacff4d72bc83df7b8c1e6c8d53b4a726c576d690dee272397778a6796096072fc3fffe4a4f1cbc0179a91fe9405b6 |
28 |
-DIST htslib-1.2.1.tar.bz2 911326 SHA256 bddb1372b9215b32e0f21d8394bab859c57cb00324a8dc06775cdac5b4d662b0 SHA512 23db1861cd08b503223f14dcbbdf9c6ae24dec648c987816abc47cc85fa7287c2405be72193cf492fff4f5991ff7b1f55dc386004588971a0e43a2f1c7355199 WHIRLPOOL d81f1cc74bb7e70d538f3e616f290a50017c56c517d9986f84c897b75524848135dd1788f92ff983c701ab7d5e84163123c570a200b83bea6a7922f4c1293107 |
29 |
-DIST htslib-1.3.1.tar.bz2 983165 SHA256 49d53a2395b8cef7d1d11270a09de888df8ba06f70fe68282e8235ee04124ae6 SHA512 cdc34166d36a3bf4479d020a2352fe6e8fb7ad92c3205b3fbde3e83b0916cffcfdcf2f28a68a4937e58b903ea8913558ae3a90c2445212da1f25a3b30c43d786 WHIRLPOOL 474de4015cf4f8c2b469f45693ba3e677be246b946a8ba70205219dd25f16ce85def7c062c4073326aa0a795a732e84664ab7df2c002cca6e47abce7777b145c |
30 |
-DIST htslib-1.3.tar.bz2 952864 SHA256 f203af750ccc80fd421c70a04d90a03097d2ef2abe0e6d8f0ae6435d6c11aeab SHA512 1a96fd22632b4a593596645b3a40aa59aaaaa9f342f97ec8c1807fe4058576420ba2c6279594d00bfc67db93aa858bd63bf3e2cf1a63e79605791c6f8aef097c WHIRLPOOL 49140830c525cea21533cc9924a5f0a5e6aecef24cf7ac58ddc959faac205b1bcc2d6f423daab6d6ff8cb5c9ad5b750cfef9e7181a68485ab35e10b7932ab4a6 |
31 |
DIST htslib-1.5.tar.bz2 1051132 SHA256 a02b515ea51d86352b089c63d778fb5e8b9d784937cf157e587189cb97ad922d SHA512 fd58552ddbd178f9797123fdaf47914ccd0e2aefd055fc6557ac8f479c600775616107cfa871c3acd93079f45974a19f443941a79f2acfd2a8c2983ef35b8917 WHIRLPOOL fb7026c26816db6746006d1b5ade235ce10181a633c9bab8ed3d9f72aaa152d0b68fd69d8988d69fef2bd2d57f9676de0761b2577ef0dd1d334da5d028cb64ee |
32 |
|
33 |
diff --git a/sci-libs/htslib/htslib-1.0.ebuild b/sci-libs/htslib/htslib-1.0.ebuild |
34 |
deleted file mode 100644 |
35 |
index d5c594b0cfb..00000000000 |
36 |
--- a/sci-libs/htslib/htslib-1.0.ebuild |
37 |
+++ /dev/null |
38 |
@@ -1,44 +0,0 @@ |
39 |
-# Copyright 1999-2015 Gentoo Foundation |
40 |
-# Distributed under the terms of the GNU General Public License v2 |
41 |
- |
42 |
-EAPI=5 |
43 |
- |
44 |
-inherit multilib toolchain-funcs |
45 |
- |
46 |
-DESCRIPTION="C library for high-throughput sequencing data formats" |
47 |
-HOMEPAGE="http://www.htslib.org/" |
48 |
-SRC_URI="mirror://sourceforge/samtools/${PV}/${P}.tar.bz2" |
49 |
- |
50 |
-SLOT="0" |
51 |
-LICENSE="MIT" |
52 |
-KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux" |
53 |
-IUSE="static-libs" |
54 |
- |
55 |
-src_prepare() { |
56 |
- sed \ |
57 |
- -e "/libdir/s:lib$:$(get_libdir):g" \ |
58 |
- -i Makefile || die |
59 |
-} |
60 |
- |
61 |
-src_compile() { |
62 |
- emake \ |
63 |
- AR="$(tc-getAR)" \ |
64 |
- CC="$(tc-getCC)" \ |
65 |
- CFLAGS="${CFLAGS}" \ |
66 |
- LDFLAGS="${LDFLAGS}" |
67 |
-} |
68 |
- |
69 |
-src_install() { |
70 |
- emake \ |
71 |
- DESTDIR="${D}" \ |
72 |
- prefix="${EPREFIX}/usr" \ |
73 |
- install |
74 |
- |
75 |
- rm "${ED}/usr/share/man/man1/libhts.so.1" || die |
76 |
- |
77 |
- if ! use static-libs; then |
78 |
- find "${ED}" -type f -name "*.a" -delete || die |
79 |
- fi |
80 |
- |
81 |
- dodoc README |
82 |
-} |
83 |
|
84 |
diff --git a/sci-libs/htslib/htslib-1.1.ebuild b/sci-libs/htslib/htslib-1.1.ebuild |
85 |
deleted file mode 100644 |
86 |
index 5f9d646c827..00000000000 |
87 |
--- a/sci-libs/htslib/htslib-1.1.ebuild |
88 |
+++ /dev/null |
89 |
@@ -1,42 +0,0 @@ |
90 |
-# Copyright 1999-2015 Gentoo Foundation |
91 |
-# Distributed under the terms of the GNU General Public License v2 |
92 |
- |
93 |
-EAPI=5 |
94 |
- |
95 |
-inherit multilib toolchain-funcs |
96 |
- |
97 |
-DESCRIPTION="C library for high-throughput sequencing data formats" |
98 |
-HOMEPAGE="http://www.htslib.org/" |
99 |
-SRC_URI="mirror://sourceforge/samtools/${PV}/${P}.tar.bz2" |
100 |
- |
101 |
-SLOT="0" |
102 |
-LICENSE="MIT" |
103 |
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" |
104 |
-IUSE="static-libs" |
105 |
- |
106 |
-src_prepare() { |
107 |
- sed \ |
108 |
- -e "/libdir/s:lib$:$(get_libdir):g" \ |
109 |
- -i Makefile || die |
110 |
-} |
111 |
- |
112 |
-src_compile() { |
113 |
- emake \ |
114 |
- AR="$(tc-getAR)" \ |
115 |
- CC="$(tc-getCC)" \ |
116 |
- CFLAGS="${CFLAGS}" \ |
117 |
- LDFLAGS="${LDFLAGS}" |
118 |
-} |
119 |
- |
120 |
-src_install() { |
121 |
- emake \ |
122 |
- DESTDIR="${D}" \ |
123 |
- prefix="${EPREFIX}/usr" \ |
124 |
- install |
125 |
- |
126 |
- if ! use static-libs; then |
127 |
- find "${ED}" -type f -name "*.a" -delete || die |
128 |
- fi |
129 |
- |
130 |
- dodoc README |
131 |
-} |
132 |
|
133 |
diff --git a/sci-libs/htslib/htslib-1.2.1.ebuild b/sci-libs/htslib/htslib-1.2.1.ebuild |
134 |
deleted file mode 100644 |
135 |
index 0ff4541bf01..00000000000 |
136 |
--- a/sci-libs/htslib/htslib-1.2.1.ebuild |
137 |
+++ /dev/null |
138 |
@@ -1,20 +0,0 @@ |
139 |
-# Copyright 1999-2015 Gentoo Foundation |
140 |
-# Distributed under the terms of the GNU General Public License v2 |
141 |
- |
142 |
-EAPI=5 |
143 |
- |
144 |
-DESCRIPTION="C library for high-throughput sequencing data formats" |
145 |
-HOMEPAGE="http://www.htslib.org/" |
146 |
-SRC_URI="mirror://sourceforge/samtools/${PV}/${P}.tar.bz2" |
147 |
- |
148 |
-SLOT="0" |
149 |
-LICENSE="MIT" |
150 |
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" |
151 |
-IUSE="static-libs" |
152 |
- |
153 |
-src_install() { |
154 |
- default |
155 |
- if ! use static-libs; then |
156 |
- find "${ED}" -type f -name "*.a" -delete || die |
157 |
- fi |
158 |
-} |
159 |
|
160 |
diff --git a/sci-libs/htslib/htslib-1.3.1.ebuild b/sci-libs/htslib/htslib-1.3.1.ebuild |
161 |
deleted file mode 100644 |
162 |
index be2d3df48d4..00000000000 |
163 |
--- a/sci-libs/htslib/htslib-1.3.1.ebuild |
164 |
+++ /dev/null |
165 |
@@ -1,20 +0,0 @@ |
166 |
-# Copyright 1999-2016 Gentoo Foundation |
167 |
-# Distributed under the terms of the GNU General Public License v2 |
168 |
- |
169 |
-EAPI=6 |
170 |
- |
171 |
-DESCRIPTION="C library for high-throughput sequencing data formats" |
172 |
-HOMEPAGE="http://www.htslib.org/" |
173 |
-SRC_URI="mirror://sourceforge/samtools/${PV}/${P}.tar.bz2" |
174 |
- |
175 |
-SLOT="0" |
176 |
-LICENSE="MIT" |
177 |
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" |
178 |
-IUSE="static-libs" |
179 |
- |
180 |
-src_install() { |
181 |
- default |
182 |
- if ! use static-libs; then |
183 |
- find "${ED}" -type f -name "*.a" -delete || die |
184 |
- fi |
185 |
-} |
186 |
|
187 |
diff --git a/sci-libs/htslib/htslib-1.3.ebuild b/sci-libs/htslib/htslib-1.3.ebuild |
188 |
deleted file mode 100644 |
189 |
index be2d3df48d4..00000000000 |
190 |
--- a/sci-libs/htslib/htslib-1.3.ebuild |
191 |
+++ /dev/null |
192 |
@@ -1,20 +0,0 @@ |
193 |
-# Copyright 1999-2016 Gentoo Foundation |
194 |
-# Distributed under the terms of the GNU General Public License v2 |
195 |
- |
196 |
-EAPI=6 |
197 |
- |
198 |
-DESCRIPTION="C library for high-throughput sequencing data formats" |
199 |
-HOMEPAGE="http://www.htslib.org/" |
200 |
-SRC_URI="mirror://sourceforge/samtools/${PV}/${P}.tar.bz2" |
201 |
- |
202 |
-SLOT="0" |
203 |
-LICENSE="MIT" |
204 |
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux" |
205 |
-IUSE="static-libs" |
206 |
- |
207 |
-src_install() { |
208 |
- default |
209 |
- if ! use static-libs; then |
210 |
- find "${ED}" -type f -name "*.a" -delete || die |
211 |
- fi |
212 |
-} |