Gentoo Archives: gentoo-commits

From: David Seifert <soap@g.o>
To: gentoo-commits@l.g.o
Subject: [gentoo-commits] repo/gentoo:master commit in: sci-libs/htslib/
Date: Sat, 02 Sep 2017 12:37:22
Message-Id: 1504355826.8414705ae146126e4745b343cd33e71a405cb166.soap@gentoo
1 commit: 8414705ae146126e4745b343cd33e71a405cb166
2 Author: David Seifert <soap <AT> gentoo <DOT> org>
3 AuthorDate: Sat Sep 2 11:07:41 2017 +0000
4 Commit: David Seifert <soap <AT> gentoo <DOT> org>
5 CommitDate: Sat Sep 2 12:37:06 2017 +0000
6 URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=8414705a
7
8 sci-libs/htslib: Remove old
9
10 Package-Manager: Portage-2.3.8, Repoman-2.3.3
11 Closes: https://github.com/gentoo/gentoo/pull/5593
12
13 sci-libs/htslib/Manifest | 5 -----
14 sci-libs/htslib/htslib-1.0.ebuild | 44 -------------------------------------
15 sci-libs/htslib/htslib-1.1.ebuild | 42 -----------------------------------
16 sci-libs/htslib/htslib-1.2.1.ebuild | 20 -----------------
17 sci-libs/htslib/htslib-1.3.1.ebuild | 20 -----------------
18 sci-libs/htslib/htslib-1.3.ebuild | 20 -----------------
19 6 files changed, 151 deletions(-)
20
21 diff --git a/sci-libs/htslib/Manifest b/sci-libs/htslib/Manifest
22 index 728098018cc..fbf89b440a9 100644
23 --- a/sci-libs/htslib/Manifest
24 +++ b/sci-libs/htslib/Manifest
25 @@ -1,6 +1 @@
26 -DIST htslib-1.0.tar.bz2 842174 SHA256 3d53fb081fafd930cadfee6f950faacc1993a0f4a9fa329fc897865fc6b331bc SHA512 aee7080a31c3fe5bd1fe4a16102da4aef7d415fd022781c1a5bdc1316ca50f8fcabbb95a39adc867e4eb5ac2d8ed63ab15ceafcd768e840d2593282916313507 WHIRLPOOL 512f4a95e98129151fef34fb90294138bc0aec40d5c2345d15d49ded02810c4663b8ff65726ced9f0d9ceb300295da066f6025d2b1966224937fc9ff58f2b58f
27 -DIST htslib-1.1.tar.bz2 844870 SHA256 204e894074d9a864d27b607fda19f6240c5da351bb61bfc6c94beaa8790e4d58 SHA512 cde0b01583035f139203b8e9884dc97846bdf02fbb6dd2af74d0829270c2141ac490d0ca3ece4f9afd9d66d6af235452d3e94bbe0ea6e1a8625405735a813271 WHIRLPOOL 56e986cd7ee29d2d680ef55fd9128d4e43bacff4d72bc83df7b8c1e6c8d53b4a726c576d690dee272397778a6796096072fc3fffe4a4f1cbc0179a91fe9405b6
28 -DIST htslib-1.2.1.tar.bz2 911326 SHA256 bddb1372b9215b32e0f21d8394bab859c57cb00324a8dc06775cdac5b4d662b0 SHA512 23db1861cd08b503223f14dcbbdf9c6ae24dec648c987816abc47cc85fa7287c2405be72193cf492fff4f5991ff7b1f55dc386004588971a0e43a2f1c7355199 WHIRLPOOL d81f1cc74bb7e70d538f3e616f290a50017c56c517d9986f84c897b75524848135dd1788f92ff983c701ab7d5e84163123c570a200b83bea6a7922f4c1293107
29 -DIST htslib-1.3.1.tar.bz2 983165 SHA256 49d53a2395b8cef7d1d11270a09de888df8ba06f70fe68282e8235ee04124ae6 SHA512 cdc34166d36a3bf4479d020a2352fe6e8fb7ad92c3205b3fbde3e83b0916cffcfdcf2f28a68a4937e58b903ea8913558ae3a90c2445212da1f25a3b30c43d786 WHIRLPOOL 474de4015cf4f8c2b469f45693ba3e677be246b946a8ba70205219dd25f16ce85def7c062c4073326aa0a795a732e84664ab7df2c002cca6e47abce7777b145c
30 -DIST htslib-1.3.tar.bz2 952864 SHA256 f203af750ccc80fd421c70a04d90a03097d2ef2abe0e6d8f0ae6435d6c11aeab SHA512 1a96fd22632b4a593596645b3a40aa59aaaaa9f342f97ec8c1807fe4058576420ba2c6279594d00bfc67db93aa858bd63bf3e2cf1a63e79605791c6f8aef097c WHIRLPOOL 49140830c525cea21533cc9924a5f0a5e6aecef24cf7ac58ddc959faac205b1bcc2d6f423daab6d6ff8cb5c9ad5b750cfef9e7181a68485ab35e10b7932ab4a6
31 DIST htslib-1.5.tar.bz2 1051132 SHA256 a02b515ea51d86352b089c63d778fb5e8b9d784937cf157e587189cb97ad922d SHA512 fd58552ddbd178f9797123fdaf47914ccd0e2aefd055fc6557ac8f479c600775616107cfa871c3acd93079f45974a19f443941a79f2acfd2a8c2983ef35b8917 WHIRLPOOL fb7026c26816db6746006d1b5ade235ce10181a633c9bab8ed3d9f72aaa152d0b68fd69d8988d69fef2bd2d57f9676de0761b2577ef0dd1d334da5d028cb64ee
32
33 diff --git a/sci-libs/htslib/htslib-1.0.ebuild b/sci-libs/htslib/htslib-1.0.ebuild
34 deleted file mode 100644
35 index d5c594b0cfb..00000000000
36 --- a/sci-libs/htslib/htslib-1.0.ebuild
37 +++ /dev/null
38 @@ -1,44 +0,0 @@
39 -# Copyright 1999-2015 Gentoo Foundation
40 -# Distributed under the terms of the GNU General Public License v2
41 -
42 -EAPI=5
43 -
44 -inherit multilib toolchain-funcs
45 -
46 -DESCRIPTION="C library for high-throughput sequencing data formats"
47 -HOMEPAGE="http://www.htslib.org/"
48 -SRC_URI="mirror://sourceforge/samtools/${PV}/${P}.tar.bz2"
49 -
50 -SLOT="0"
51 -LICENSE="MIT"
52 -KEYWORDS="amd64 x86 ~amd64-linux ~x86-linux"
53 -IUSE="static-libs"
54 -
55 -src_prepare() {
56 - sed \
57 - -e "/libdir/s:lib$:$(get_libdir):g" \
58 - -i Makefile || die
59 -}
60 -
61 -src_compile() {
62 - emake \
63 - AR="$(tc-getAR)" \
64 - CC="$(tc-getCC)" \
65 - CFLAGS="${CFLAGS}" \
66 - LDFLAGS="${LDFLAGS}"
67 -}
68 -
69 -src_install() {
70 - emake \
71 - DESTDIR="${D}" \
72 - prefix="${EPREFIX}/usr" \
73 - install
74 -
75 - rm "${ED}/usr/share/man/man1/libhts.so.1" || die
76 -
77 - if ! use static-libs; then
78 - find "${ED}" -type f -name "*.a" -delete || die
79 - fi
80 -
81 - dodoc README
82 -}
83
84 diff --git a/sci-libs/htslib/htslib-1.1.ebuild b/sci-libs/htslib/htslib-1.1.ebuild
85 deleted file mode 100644
86 index 5f9d646c827..00000000000
87 --- a/sci-libs/htslib/htslib-1.1.ebuild
88 +++ /dev/null
89 @@ -1,42 +0,0 @@
90 -# Copyright 1999-2015 Gentoo Foundation
91 -# Distributed under the terms of the GNU General Public License v2
92 -
93 -EAPI=5
94 -
95 -inherit multilib toolchain-funcs
96 -
97 -DESCRIPTION="C library for high-throughput sequencing data formats"
98 -HOMEPAGE="http://www.htslib.org/"
99 -SRC_URI="mirror://sourceforge/samtools/${PV}/${P}.tar.bz2"
100 -
101 -SLOT="0"
102 -LICENSE="MIT"
103 -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
104 -IUSE="static-libs"
105 -
106 -src_prepare() {
107 - sed \
108 - -e "/libdir/s:lib$:$(get_libdir):g" \
109 - -i Makefile || die
110 -}
111 -
112 -src_compile() {
113 - emake \
114 - AR="$(tc-getAR)" \
115 - CC="$(tc-getCC)" \
116 - CFLAGS="${CFLAGS}" \
117 - LDFLAGS="${LDFLAGS}"
118 -}
119 -
120 -src_install() {
121 - emake \
122 - DESTDIR="${D}" \
123 - prefix="${EPREFIX}/usr" \
124 - install
125 -
126 - if ! use static-libs; then
127 - find "${ED}" -type f -name "*.a" -delete || die
128 - fi
129 -
130 - dodoc README
131 -}
132
133 diff --git a/sci-libs/htslib/htslib-1.2.1.ebuild b/sci-libs/htslib/htslib-1.2.1.ebuild
134 deleted file mode 100644
135 index 0ff4541bf01..00000000000
136 --- a/sci-libs/htslib/htslib-1.2.1.ebuild
137 +++ /dev/null
138 @@ -1,20 +0,0 @@
139 -# Copyright 1999-2015 Gentoo Foundation
140 -# Distributed under the terms of the GNU General Public License v2
141 -
142 -EAPI=5
143 -
144 -DESCRIPTION="C library for high-throughput sequencing data formats"
145 -HOMEPAGE="http://www.htslib.org/"
146 -SRC_URI="mirror://sourceforge/samtools/${PV}/${P}.tar.bz2"
147 -
148 -SLOT="0"
149 -LICENSE="MIT"
150 -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
151 -IUSE="static-libs"
152 -
153 -src_install() {
154 - default
155 - if ! use static-libs; then
156 - find "${ED}" -type f -name "*.a" -delete || die
157 - fi
158 -}
159
160 diff --git a/sci-libs/htslib/htslib-1.3.1.ebuild b/sci-libs/htslib/htslib-1.3.1.ebuild
161 deleted file mode 100644
162 index be2d3df48d4..00000000000
163 --- a/sci-libs/htslib/htslib-1.3.1.ebuild
164 +++ /dev/null
165 @@ -1,20 +0,0 @@
166 -# Copyright 1999-2016 Gentoo Foundation
167 -# Distributed under the terms of the GNU General Public License v2
168 -
169 -EAPI=6
170 -
171 -DESCRIPTION="C library for high-throughput sequencing data formats"
172 -HOMEPAGE="http://www.htslib.org/"
173 -SRC_URI="mirror://sourceforge/samtools/${PV}/${P}.tar.bz2"
174 -
175 -SLOT="0"
176 -LICENSE="MIT"
177 -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
178 -IUSE="static-libs"
179 -
180 -src_install() {
181 - default
182 - if ! use static-libs; then
183 - find "${ED}" -type f -name "*.a" -delete || die
184 - fi
185 -}
186
187 diff --git a/sci-libs/htslib/htslib-1.3.ebuild b/sci-libs/htslib/htslib-1.3.ebuild
188 deleted file mode 100644
189 index be2d3df48d4..00000000000
190 --- a/sci-libs/htslib/htslib-1.3.ebuild
191 +++ /dev/null
192 @@ -1,20 +0,0 @@
193 -# Copyright 1999-2016 Gentoo Foundation
194 -# Distributed under the terms of the GNU General Public License v2
195 -
196 -EAPI=6
197 -
198 -DESCRIPTION="C library for high-throughput sequencing data formats"
199 -HOMEPAGE="http://www.htslib.org/"
200 -SRC_URI="mirror://sourceforge/samtools/${PV}/${P}.tar.bz2"
201 -
202 -SLOT="0"
203 -LICENSE="MIT"
204 -KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
205 -IUSE="static-libs"
206 -
207 -src_install() {
208 - default
209 - if ! use static-libs; then
210 - find "${ED}" -type f -name "*.a" -delete || die
211 - fi
212 -}