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| From: | "Robin H. Johnson (robbat2)" <robbat2@g.o> |
|---|---|
| To: | gentoo-commits@l.g.o |
| Subject: | [gentoo-commits] gentoo-x86 commit in dev-perl/Bio-SamTools: ChangeLog Bio-SamTools-1.300.0.ebuild |
| Date: | Mon, 05 Sep 2011 18:07:23 |
| Message-Id: | 20110905180713.8DBD82004C@flycatcher.gentoo.org |
| 1 | robbat2 11/09/05 18:07:13 |
| 2 | |
| 3 | Modified: ChangeLog |
| 4 | Added: Bio-SamTools-1.300.0.ebuild |
| 5 | Log: |
| 6 | Version bump via perl-bump experimental tool. |
| 7 | |
| 8 | (Portage version: 2.2.0_alpha51/cvs/Linux x86_64) |
| 9 | |
| 10 | Revision Changes Path |
| 11 | 1.4 dev-perl/Bio-SamTools/ChangeLog |
| 12 | |
| 13 | file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog?rev=1.4&view=markup |
| 14 | plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog?rev=1.4&content-type=text/plain |
| 15 | diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog?r1=1.3&r2=1.4 |
| 16 | |
| 17 | Index: ChangeLog |
| 18 | =================================================================== |
| 19 | RCS file: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog,v |
| 20 | retrieving revision 1.3 |
| 21 | retrieving revision 1.4 |
| 22 | diff -p -w -b -B -u -u -r1.3 -r1.4 |
| 23 | --- ChangeLog 4 Sep 2011 11:20:46 -0000 1.3 |
| 24 | +++ ChangeLog 5 Sep 2011 18:07:13 -0000 1.4 |
| 25 | @@ -1,6 +1,12 @@ |
| 26 | # ChangeLog for dev-perl/Bio-SamTools |
| 27 | # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 |
| 28 | -# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog,v 1.3 2011/09/04 11:20:46 tove Exp $ |
| 29 | +# $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/ChangeLog,v 1.4 2011/09/05 18:07:13 robbat2 Exp $ |
| 30 | + |
| 31 | +*Bio-SamTools-1.300.0 (05 Sep 2011) |
| 32 | + |
| 33 | + 05 Sep 2011; Robin H. Johnson <robbat2@g.o> |
| 34 | + +Bio-SamTools-1.300.0.ebuild: |
| 35 | + Version bump via perl-bump experimental tool. |
| 36 | |
| 37 | 04 Sep 2011; Torsten Veller <tove@g.o> -Bio-SamTools-1.29.ebuild: |
| 38 | Cleanup |
| 39 | |
| 40 | |
| 41 | |
| 42 | 1.1 dev-perl/Bio-SamTools/Bio-SamTools-1.300.0.ebuild |
| 43 | |
| 44 | file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.300.0.ebuild?rev=1.1&view=markup |
| 45 | plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.300.0.ebuild?rev=1.1&content-type=text/plain |
| 46 | |
| 47 | Index: Bio-SamTools-1.300.0.ebuild |
| 48 | =================================================================== |
| 49 | # Copyright 1999-2011 Gentoo Foundation |
| 50 | # Distributed under the terms of the GNU General Public License v2 |
| 51 | # $Header: /var/cvsroot/gentoo-x86/dev-perl/Bio-SamTools/Bio-SamTools-1.300.0.ebuild,v 1.1 2011/09/05 18:07:13 robbat2 Exp $ |
| 52 | |
| 53 | EAPI=4 |
| 54 | |
| 55 | MODULE_AUTHOR=LDS |
| 56 | MODULE_VERSION=1.30 |
| 57 | inherit perl-module |
| 58 | |
| 59 | DESCRIPTION="Read SAM/BAM database files" |
| 60 | |
| 61 | SLOT="0" |
| 62 | KEYWORDS="~amd64 ~x86" |
| 63 | IUSE="" |
| 64 | |
| 65 | DEPEND="sci-biology/bioperl |
| 66 | sci-biology/samtools" |
| 67 | RDEPEND="${DEPEND} |
| 68 | virtual/perl-ExtUtils-CBuilder |
| 69 | virtual/perl-Module-Build |
| 70 | " |
| 71 | |
| 72 | SRC_TEST=do |
| 73 | |
| 74 | src_prepare() { |
| 75 | sed -i -e 's|my $HeaderFile = "bam.h";|my $HeaderFile = "bam/bam.h";|' \ |
| 76 | -e 's|my $LibFile = "libbam.a";|my $LibFile = "libbam.so";|' Build.PL || die |
| 77 | sed -i -e 's|#include "bam.h"|#include "bam/bam.h"|' \ |
| 78 | -e 's|#include "khash.h"|#include "bam/khash.h"|' \ |
| 79 | -e 's|#include "faidx.h"|#include "bam/faidx.h"|' lib/Bio/DB/Sam.xs || die |
| 80 | perl-module_src_prepare |
| 81 | } |