Gentoo Archives: gentoo-commits

From: Justin Lecher <jlec@g.o>
To: gentoo-commits@l.g.o
Subject: [gentoo-commits] proj/sci:ccp4 commit in: /
Date: Thu, 30 May 2013 10:31:24
Message-Id: 1366804192.6d23e13180fb3099af32a680e3a94a26d53a7160.jlec@gentoo
1 commit: 6d23e13180fb3099af32a680e3a94a26d53a7160
2 Author: Andreas Schäfer <gentryx <AT> gmx <DOT> de>
3 AuthorDate: Wed Apr 24 11:49:52 2013 +0000
4 Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
5 CommitDate: Wed Apr 24 11:49:52 2013 +0000
6 URL: http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=6d23e131
7
8 Merge branch 'master' of https://github.com/gentoo-science/sci
9
10
11 app-doc/root-docs/ChangeLog | 9 +-
12 app-doc/root-docs/Manifest | 3 +-
13 app-doc/root-docs/root-docs-5.32.04.ebuild | 96 -
14 ...ocs-5.34.03.ebuild => root-docs-5.34.05.ebuild} | 5 +-
15 app-doc/root-docs/root-docs-9999.ebuild | 3 +-
16 app-doc/scalapack-docs/ChangeLog | 7 +-
17 app-doc/scalapack-docs/metadata.xml | 3 +-
18 app-doc/scalapack-docs/scalapack-docs-2.0.ebuild | 6 +-
19 app-forensics/vine/ChangeLog | 11 +
20 app-forensics/vine/Manifest | 1 +
21 app-forensics/vine/files/vine-1.0-binutils.patch | 16 +
22 app-forensics/vine/files/vine-1.0-gcc46.patch | 37 +
23 app-forensics/vine/files/vine-1.0-install.patch | 89 +
24 .../vine/files/vine-1.0-ocamlgraph182.patch | 68 +
25 {dev-lang/ispc => app-forensics/vine}/metadata.xml | 0
26 app-forensics/vine/vine-1.0.ebuild | 40 +
27 app-portage/g-octave/ChangeLog | 6 +-
28 app-portage/g-octave/g-octave-9999.ebuild | 44 +-
29 app-portage/g-octave/metadata.xml | 10 +-
30 app-text/jabref/ChangeLog | 12 +
31 app-text/jabref/Manifest | 1 +
32 ...{jabref-2.9.2-r1.ebuild => jabref-2.10b.ebuild} | 13 +-
33 app-text/jabref/jabref-2.9.2-r1.ebuild | 9 +-
34 dev-db/cppdb/ChangeLog | 26 +
35 dev-db/cppdb/Manifest | 1 +
36 dev-db/cppdb/cppdb-0.3.1-r1.ebuild | 50 +
37 dev-db/cppdb/metadata.xml | 13 +
38 dev-java/flexdock/Manifest | 2 +-
39 ....2-nodemo.patch => flexdock-1.2.3-nodemo.patch} | 0
40 ...flexdock-1.2.2.ebuild => flexdock-1.2.3.ebuild} | 8 +-
41 dev-java/gluegen/ChangeLog | 4 +
42 dev-java/gluegen/gluegen-2.0_rc8.ebuild | 2 +-
43 dev-java/gluegen/metadata.xml | 4 +-
44 dev-java/jcip-annotations/ChangeLog | 6 +-
45 dev-java/jcip-annotations/Manifest | 2 +-
46 .../jcip-annotations-1.0-r1.ebuild | 7 +-
47 dev-java/jcip-annotations/metadata.xml | 13 +-
48 dev-java/jlatexmath-fop/Manifest | 3 +-
49 .../files/jlatexmath-fop-1.0.2-fixpaths.patch | 13 +
50 dev-java/jlatexmath-fop/files/version.xml | 5 +
51 .../jlatexmath-fop/jlatexmath-fop-0.9.7.ebuild | 52 -
52 .../jlatexmath-fop/jlatexmath-fop-1.0.0.ebuild | 52 -
53 .../jlatexmath-fop/jlatexmath-fop-1.0.2.ebuild | 45 +
54 dev-java/jlatexmath/Manifest | 3 +-
55 dev-java/jlatexmath/jlatexmath-1.0.0.ebuild | 32 -
56 ...exmath-0.9.7.ebuild => jlatexmath-1.0.2.ebuild} | 22 +-
57 dev-java/jogl/ChangeLog | 4 +
58 dev-java/jogl/jogl-2.0_rc8-r1.ebuild | 2 +-
59 dev-java/jogl/metadata.xml | 10 +-
60 dev-java/netcdf/Manifest | 2 +-
61 dev-java/scirenderer/Manifest | 2 +-
62 ...derer-1.0.5.ebuild => scirenderer-1.1.0.ebuild} | 4 +-
63 dev-java/xmlgraphics-commons/Manifest | 1 +
64 .../files/disable-iccprofile-test.patch | 38 +
65 .../xmlgraphics-commons}/metadata.xml | 2 +-
66 .../xmlgraphics-commons-1.5.ebuild | 58 +
67 dev-lang/berkeley_upc/ChangeLog | 10 +
68 dev-lang/berkeley_upc/Manifest | 1 +
69 dev-lang/berkeley_upc/berkeley_upc-2.16.0.ebuild | 55 +
70 dev-lang/berkeley_upc/metadata.xml | 25 +
71 dev-lang/berkeley_upc_translator/ChangeLog | 11 +
72 dev-lang/berkeley_upc_translator/Manifest | 1 +
73 .../berkeley_upc_translator-2.16.0.ebuild | 30 +
74 ...keley_upc_translator-2.16.0-stackoverflow.patch | 18 +
75 .../berkeley_upc_translator}/metadata.xml | 4 +-
76 dev-lang/julia/files/julia-nopatchelf.patch | 14 +
77 dev-lang/julia/julia-9999.ebuild | 28 +-
78 dev-lang/julia/metadata.xml | 8 +-
79 dev-lang/vtune/ChangeLog | 8 +-
80 dev-lang/vtune/Manifest | 4 +-
81 dev-lang/vtune/metadata.xml | 8 +-
82 dev-lang/vtune/vtune-11.0.7.221625.ebuild | 69 -
83 dev-lang/vtune/vtune-13.1.4.270817.ebuild | 38 +
84 dev-libs/double-conversion/ChangeLog | 10 +-
85 dev-libs/double-conversion/Manifest | 2 +-
86 ...n-1.1.ebuild => double-conversion-1.1.1.ebuild} | 8 +-
87 ...s.patch => double-conversion-1.1.1-scons.patch} | 0
88 dev-libs/fortrancl/ChangeLog | 8 +
89 dev-libs/fortrancl/fortrancl-0.1_alpha3.ebuild | 5 +-
90 dev-libs/fortrancl/metadata.xml | 12 +-
91 dev-libs/libpfm/ChangeLog | 12 +
92 dev-libs/libpfm/Manifest | 1 +
93 dev-libs/libpfm/libpfm-4.3.0.ebuild | 35 +
94 .../envytools => dev-libs/libpfm}/metadata.xml | 0
95 dev-libs/mathjax/ChangeLog | 10 -
96 dev-libs/mathjax/Manifest | 1 -
97 dev-libs/mathjax/mathjax-2.0.ebuild | 50 -
98 dev-libs/mathjax/metadata.xml | 17 -
99 dev-libs/papi/ChangeLog | 9 +
100 dev-libs/papi/Manifest | 1 +
101 {x11-misc/envytools => dev-libs/papi}/metadata.xml | 0
102 dev-libs/papi/papi-5.1.0.2.ebuild | 30 +
103 dev-ml/lacaml/ChangeLog | 6 +-
104 dev-ml/lacaml/lacaml-7.0.3.ebuild | 12 +-
105 dev-ml/lacaml/metadata.xml | 4 +-
106 dev-ml/zarith/ChangeLog | 3 +
107 dev-ml/zarith/Manifest | 3 -
108 dev-ml/zarith/metadata.xml | 16 +-
109 dev-ml/zarith/zarith-1.1.ebuild | 31 +-
110 dev-perl/DBIx-DBStag/ChangeLog | 6 +-
111 dev-perl/DBIx-DBStag/DBIx-DBStag-0.12.ebuild | 9 +-
112 dev-perl/DBIx-DBStag/Manifest | 2 +-
113 dev-perl/DBIx-DBStag/metadata.xml | 10 +-
114 dev-perl/Log-Cabin/ChangeLog | 9 +-
115 dev-perl/Log-Cabin/Log-Cabin-0.06.ebuild | 9 +-
116 dev-perl/Log-Cabin/Manifest | 2 +-
117 dev-perl/Log-Cabin/metadata.xml | 10 +-
118 dev-perl/Text-ParseWords/ChangeLog | 6 +-
119 dev-perl/Text-ParseWords/Manifest | 2 +-
120 .../Text-ParseWords/Text-ParseWords-3.27.ebuild | 6 +-
121 dev-perl/Text-ParseWords/metadata.xml | 10 +-
122 dev-perl/Time-Progress/ChangeLog | 6 +-
123 dev-perl/Time-Progress/Manifest | 2 +-
124 dev-perl/Time-Progress/Time-Progress-1.7.ebuild | 6 +-
125 dev-perl/Time-Progress/metadata.xml | 10 +-
126 dev-perl/go-perl/ChangeLog | 6 +-
127 dev-perl/go-perl/Manifest | 2 +-
128 dev-perl/go-perl/go-perl-0.13.ebuild | 10 +-
129 dev-perl/go-perl/metadata.xml | 10 +-
130 dev-python/Forthon/ChangeLog | 8 +
131 dev-python/Forthon/Forthon-0.8.11.ebuild | 11 +-
132 .../files/Forthon-0.8.11-fix_options_parser.patch | 17 +
133 dev-python/Forthon/metadata.xml | 8 +-
134 dev-python/GOGrapher/ChangeLog | 6 +-
135 dev-python/GOGrapher/GOGrapher-9999.ebuild | 10 +-
136 dev-python/GOGrapher/metadata.xml | 10 +-
137 dev-python/RecSQL/ChangeLog | 18 +
138 dev-python/RecSQL/RecSQL-9999.ebuild | 33 +
139 .../libcmatrix => dev-python/RecSQL}/metadata.xml | 3 +-
140 dev-python/pymvpa/ChangeLog | 6 +-
141 dev-python/pymvpa/metadata.xml | 4 +-
142 dev-python/pymvpa/pymvpa-0.4.4.ebuild | 30 +-
143 dev-python/pythonocc/ChangeLog | 17 +-
144 dev-python/pythonocc/Manifest | 2 +-
145 dev-python/pythonocc/metadata.xml | 2 +-
146 .../{pythonocc-0.4.ebuild => pythonocc-0.5.ebuild} | 19 +-
147 licenses/ECL-2.0 | 97 +
148 licenses/blasr | 65 +
149 licenses/mgltools | 42 +
150 media-gfx/PhiloGL/ChangeLog | 6 +-
151 media-gfx/PhiloGL/PhiloGL-1.4.3.ebuild | 6 +-
152 media-gfx/PhiloGL/metadata.xml | 8 +-
153 media-gfx/librecad/ChangeLog | 11 +-
154 media-gfx/librecad/Manifest | 7 +-
155 media-gfx/librecad/librecad-1.0.2.ebuild | 10 +-
156 ...librecad-1.0.1.ebuild => librecad-1.0.3.ebuild} | 15 +-
157 media-gfx/librecad/librecad-2.0.0_alpha3.ebuild | 48 -
158 ...0_alpha4.ebuild => librecad-2.0.0_beta5.ebuild} | 10 +-
159 media-gfx/librecad/librecad-9999.ebuild | 8 +-
160 media-gfx/librecad/metadata.xml | 18 +-
161 profiles/arch.list | 44 +
162 profiles/hardened/package.mask | 27 -
163 profiles/package.mask | 12 +
164 sci-astronomy/astrometry/ChangeLog | 6 +-
165 sci-astronomy/astrometry/astrometry-0.38.ebuild | 9 +-
166 sci-astronomy/astrometry/metadata.xml | 4 +-
167 sci-astronomy/eye/ChangeLog | 4 +-
168 sci-astronomy/eye/eye-9999.ebuild | 3 +-
169 sci-astronomy/eye/metadata.xml | 4 +-
170 sci-astronomy/stiff/ChangeLog | 5 +-
171 sci-astronomy/stiff/metadata.xml | 4 +-
172 sci-astronomy/stiff/stiff-9999.ebuild | 23 +-
173 sci-astronomy/zebra/ChangeLog | 5 +-
174 sci-astronomy/zebra/metadata.xml | 4 +-
175 sci-astronomy/zebra/zebra-1.01.ebuild | 16 +-
176 sci-biology/Gambit/ChangeLog | 8 +
177 sci-biology/Gambit/Gambit-0.4.145.ebuild | 6 +-
178 sci-biology/Gambit/Manifest | 4 +-
179 sci-biology/Gambit/metadata.xml | 10 +-
180 sci-biology/YASRA/ChangeLog | 5 +-
181 sci-biology/YASRA/YASRA-2.1.ebuild | 4 +-
182 sci-biology/YASRA/metadata.xml | 10 +-
183 sci-biology/amos/ChangeLog | 8 +-
184 sci-biology/amos/amos-9999.ebuild | 47 +-
185 sci-biology/amos/metadata.xml | 17 +-
186 sci-biology/artemis-bin/ChangeLog | 6 +-
187 sci-biology/artemis-bin/Manifest | 2 +-
188 sci-biology/artemis-bin/artemis-bin-13.2.12.ebuild | 3 +-
189 sci-biology/artemis-bin/metadata.xml | 10 +-
190 sci-biology/blasr/ChangeLog | 8 +-
191 sci-biology/blasr/Manifest | 3 -
192 sci-biology/blasr/blasr-9999.ebuild | 13 +-
193 sci-biology/blasr/metadata.xml | 10 +-
194 sci-biology/cluster/ChangeLog | 6 +-
195 sci-biology/cluster/cluster-1.50-r1.ebuild | 4 +-
196 sci-biology/cluster/cluster-1.50.ebuild | 4 +-
197 sci-biology/cluster/metadata.xml | 12 +-
198 sci-biology/consed-bin/ChangeLog | 8 +
199 sci-biology/consed-bin/Manifest | 4 +-
200 sci-biology/consed-bin/consed-bin-20.ebuild | 4 +-
201 sci-biology/consed-bin/metadata.xml | 10 +-
202 sci-biology/estscan/ChangeLog | 5 +-
203 sci-biology/estscan/Manifest | 18 +-
204 sci-biology/estscan/metadata.xml | 16 +-
205 sci-biology/hydra-sv/ChangeLog | 8 +
206 sci-biology/hydra-sv/Manifest | 2 +-
207 sci-biology/hydra-sv/hydra-sv-0.5.3.ebuild | 11 +-
208 .../hydra-sv}/metadata.xml | 0
209 sci-biology/manatee-igs/ChangeLog | 6 +-
210 sci-biology/manatee-igs/Manifest | 4 +-
211 sci-biology/manatee-igs/manatee-igs-2.23.1.ebuild | 4 +-
212 sci-biology/manatee-igs/metadata.xml | 10 +-
213 sci-biology/mira/ChangeLog | 11 +-
214 sci-biology/mira/Manifest | 7 +-
215 .../mira/files/mira-3.4.0.2-boost-1.50.patch | 24 +
216 sci-biology/mira/mira-3.4.1.1.ebuild | 61 +
217 sci-biology/mira/mira-3.9.9.ebuild | 61 +
218 sci-biology/ncbi-tools++/ChangeLog | 21 +
219 .../files/ncbi-tools++-9.0.0-as-needed.patch | 758 +-
220 sci-biology/ncbi-tools++/metadata.xml | 39 +
221 .../ncbi-tools++/ncbi-tools++-9.0.0-r1.ebuild | 95 +-
222 sci-biology/ncbi-tools++/ncbi-tools++-9.0.0.ebuild | 6 +-
223 sci-biology/sra_sdk/ChangeLog | 6 +-
224 sci-biology/sra_sdk/metadata.xml | 10 +-
225 sci-biology/sra_sdk/sra_sdk-2.1.9.ebuild | 6 +-
226 sci-biology/sra_sdk/sra_sdk-2.2.2a.ebuild | 6 +-
227 sci-biology/wcd/ChangeLog | 8 +-
228 sci-biology/wcd/Manifest | 2 +-
229 sci-biology/wcd/files/wcd-0.6.0-impl-decl.patch | 15 +
230 sci-biology/wcd/files/wcd-0.6.0-ldflags.patch | 16 +
231 sci-biology/wcd/metadata.xml | 10 +-
232 sci-biology/wcd/wcd-0.6.0.ebuild | 41 +-
233 sci-chemistry/GromacsWrapper/ChangeLog | 25 +
234 .../GromacsWrapper/GromacsWrapper-9999.ebuild | 41 +
235 .../files/0001-Drop-chmod-hack.patch | 28 +
236 .../GromacsWrapper}/metadata.xml | 3 +-
237 sci-chemistry/ambertools/ChangeLog | 14 +-
238 sci-chemistry/ambertools/ambertools-1.5-r2.ebuild | 156 -
239 sci-chemistry/ambertools/ambertools-1.5-r3.ebuild | 158 -
240 sci-chemistry/ambertools/ambertools-1.5-r4.ebuild | 10 +-
241 sci-chemistry/ambertools/ambertools-12.ebuild | 16 +-
242 sci-chemistry/ambertools/metadata.xml | 10 +-
243 sci-chemistry/ball/ChangeLog | 5 +-
244 sci-chemistry/ball/ball-9999.ebuild | 16 +-
245 sci-chemistry/ball/metadata.xml | 20 +-
246 sci-chemistry/burrow-owl/ChangeLog | 6 +-
247 sci-chemistry/burrow-owl/burrow-owl-9999.ebuild | 6 +-
248 sci-chemistry/burrow-owl/metadata.xml | 8 +-
249 sci-chemistry/camshift/ChangeLog | 6 +-
250 sci-chemistry/camshift/Manifest | 2 +-
251 sci-chemistry/camshift/camshift-1.35.0.ebuild | 45 +-
252 sci-chemistry/camshift/files/1.35.0-gcc47.patch | 148 +
253 sci-chemistry/camshift/files/1.35.0-gentoo.patch | 38 +
254 sci-chemistry/camshift/metadata.xml | 8 +-
255 sci-chemistry/chooch/ChangeLog | 7 +-
256 sci-chemistry/chooch/Manifest | 2 +-
257 sci-chemistry/chooch/chooch-5.0.2-r1.ebuild | 47 +-
258 sci-chemistry/chooch/metadata.xml | 8 +-
259 sci-chemistry/concoord/ChangeLog | 8 +-
260 sci-chemistry/concoord/Manifest | 2 +
261 .../{concoord-2.1.ebuild => concoord-2.1.2.ebuild} | 13 +-
262 sci-chemistry/concoord/concoord-2.1.ebuild | 4 +-
263 sci-chemistry/concoord/metadata.xml | 8 +-
264 sci-chemistry/cs-rosetta/ChangeLog | 18 +
265 sci-chemistry/cs-rosetta/Manifest | 3 +
266 .../cs-rosetta/cs-rosetta-1.01.2009.1109.11.ebuild | 104 +
267 .../{phenix-bin => cs-rosetta}/metadata.xml | 0
268 sci-chemistry/curvefit/ChangeLog | 6 +-
269 sci-chemistry/curvefit/curvefit-1.40.ebuild | 6 +-
270 sci-chemistry/curvefit/metadata.xml | 2 +-
271 sci-chemistry/freeon/ChangeLog | 7 +-
272 sci-chemistry/freeon/freeon-9999.ebuild | 21 +-
273 sci-chemistry/freeon/metadata.xml | 12 +-
274 sci-chemistry/gamess/ChangeLog | 6 +-
275 .../gamess/files/gamess-20120501.1.gentoo.patch | 4 +-
276 sci-chemistry/gamess/gamess-20120501.1.ebuild | 3 +-
277 sci-chemistry/gamess/metadata.xml | 20 +-
278 sci-chemistry/gnome-chemistry-utils/ChangeLog | 20 +
279 sci-chemistry/gnome-chemistry-utils/Manifest | 1 +
280 .../gnome-chemistry-utils-0.14.2.ebuild | 44 +
281 sci-chemistry/gnome-chemistry-utils/metadata.xml | 11 +
282 sci-chemistry/gromacs/ChangeLog | 18 +
283 sci-chemistry/gromacs/Manifest | 2 -
284 sci-chemistry/gromacs/gromacs-4.5.9999.ebuild | 238 -
285 sci-chemistry/gromacs/gromacs-4.6.9999.ebuild | 47 +-
286 sci-chemistry/gromacs/gromacs-9999.ebuild | 1 -
287 sci-chemistry/gromacs/metadata.xml | 1 -
288 sci-chemistry/hydronmr/ChangeLog | 10 +
289 sci-chemistry/hydronmr/Manifest | 13 +
290 sci-chemistry/hydronmr/hydronmr-7c.ebuild | 57 +
291 .../{phenix-bin => hydronmr}/metadata.xml | 0
292 sci-chemistry/jligand/ChangeLog | 6 +-
293 sci-chemistry/jligand/Manifest | 2 +-
294 sci-chemistry/jligand/jligand-1.0.19.ebuild | 4 +-
295 sci-chemistry/jligand/metadata.xml | 8 +-
296 sci-chemistry/mgltools-autodocktools/ChangeLog | 16 +
297 sci-chemistry/mgltools-autodocktools/Manifest | 3 +-
298 .../mgltools-autodocktools-1.5.4-r2.ebuild | 4 +-
299 ....ebuild => mgltools-autodocktools-1.5.6.ebuild} | 5 +-
300 .../mgltools-autodocktools-1.5.6_rc2.ebuild | 71 -
301 sci-chemistry/mgltools-bhtree/ChangeLog | 14 +
302 sci-chemistry/mgltools-bhtree/Manifest | 3 +-
303 .../mgltools-bhtree-1.5.4-r1.ebuild | 4 +-
304 ...5.6_rc3.ebuild => mgltools-bhtree-1.5.6.ebuild} | 5 +-
305 .../mgltools-bhtree-1.5.6_rc2.ebuild | 48 -
306 sci-chemistry/mgltools-cadd/ChangeLog | 12 +
307 sci-chemistry/mgltools-cadd/Manifest | 3 +-
308 ...1.5.6_rc3.ebuild => mgltools-cadd-1.5.6.ebuild} | 5 +-
309 .../mgltools-cadd/mgltools-cadd-1.5.6_rc2.ebuild | 48 -
310 sci-chemistry/mgltools-cmolkit/ChangeLog | 14 +
311 sci-chemistry/mgltools-cmolkit/Manifest | 3 +-
312 .../mgltools-cmolkit-1.5.4-r1.ebuild | 4 +-
313 ....6_rc3.ebuild => mgltools-cmolkit-1.5.6.ebuild} | 5 +-
314 .../mgltools-cmolkit-1.5.6_rc2.ebuild | 48 -
315 sci-chemistry/mgltools-dejavu/ChangeLog | 14 +
316 sci-chemistry/mgltools-dejavu/Manifest | 3 +-
317 .../mgltools-dejavu-1.5.4-r1.ebuild | 4 +-
318 ...5.6_rc3.ebuild => mgltools-dejavu-1.5.6.ebuild} | 5 +-
319 .../mgltools-dejavu-1.5.6_rc2.ebuild | 51 -
320 sci-chemistry/mgltools-geomutils/ChangeLog | 14 +
321 sci-chemistry/mgltools-geomutils/Manifest | 3 +-
322 .../mgltools-geomutils-1.5.4-r1.ebuild | 4 +-
323 ..._rc3.ebuild => mgltools-geomutils-1.5.6.ebuild} | 5 +-
324 .../mgltools-geomutils-1.5.6_rc2.ebuild | 49 -
325 sci-chemistry/mgltools-gle/ChangeLog | 13 +
326 sci-chemistry/mgltools-gle/Manifest | 3 +-
327 .../mgltools-gle/mgltools-gle-1.5.4-r1.ebuild | 4 +-
328 ...-1.5.6_rc3.ebuild => mgltools-gle-1.5.6.ebuild} | 5 +-
329 .../mgltools-gle/mgltools-gle-1.5.6_rc2.ebuild | 48 -
330 sci-chemistry/mgltools-mglutil/ChangeLog | 14 +
331 sci-chemistry/mgltools-mglutil/Manifest | 3 +-
332 .../mgltools-mglutil-1.5.4-r1.ebuild | 4 +-
333 ....6_rc3.ebuild => mgltools-mglutil-1.5.6.ebuild} | 5 +-
334 .../mgltools-mglutil-1.5.6_rc2.ebuild | 51 -
335 sci-chemistry/mgltools-molkit/ChangeLog | 14 +
336 sci-chemistry/mgltools-molkit/Manifest | 3 +-
337 .../mgltools-molkit-1.5.4-r1.ebuild | 4 +-
338 ...5.6_rc3.ebuild => mgltools-molkit-1.5.6.ebuild} | 5 +-
339 .../mgltools-molkit-1.5.6_rc2.ebuild | 50 -
340 sci-chemistry/mgltools-networkeditor/ChangeLog | 16 +
341 sci-chemistry/mgltools-networkeditor/Manifest | 3 +-
342 .../mgltools-networkeditor-1.5.4-r1.ebuild | 4 +-
343 ....ebuild => mgltools-networkeditor-1.5.6.ebuild} | 5 +-
344 .../mgltools-networkeditor-1.5.6_rc2.ebuild | 50 -
345 sci-chemistry/mgltools-opengltk/ChangeLog | 14 +
346 sci-chemistry/mgltools-opengltk/Manifest | 3 +-
347 .../mgltools-opengltk-1.5.4-r2.ebuild | 4 +-
348 ...6_rc3.ebuild => mgltools-opengltk-1.5.6.ebuild} | 5 +-
349 .../mgltools-opengltk-1.5.6_rc2.ebuild | 68 -
350 sci-chemistry/mgltools-pmv/ChangeLog | 13 +
351 sci-chemistry/mgltools-pmv/Manifest | 3 +-
352 .../mgltools-pmv/mgltools-pmv-1.5.4-r1.ebuild | 4 +-
353 ...-1.5.6_rc3.ebuild => mgltools-pmv-1.5.6.ebuild} | 5 +-
354 .../mgltools-pmv/mgltools-pmv-1.5.6_rc2.ebuild | 52 -
355 sci-chemistry/mgltools-pyautodock/ChangeLog | 15 +
356 sci-chemistry/mgltools-pyautodock/Manifest | 3 +-
357 .../mgltools-pyautodock-1.5.4-r1.ebuild | 4 +-
358 ...rc3.ebuild => mgltools-pyautodock-1.5.6.ebuild} | 5 +-
359 .../mgltools-pyautodock-1.5.6_rc2.ebuild | 48 -
360 sci-chemistry/mgltools-pybabel/ChangeLog | 14 +
361 sci-chemistry/mgltools-pybabel/Manifest | 3 +-
362 .../mgltools-pybabel-1.5.4-r1.ebuild | 4 +-
363 ....6_rc3.ebuild => mgltools-pybabel-1.5.6.ebuild} | 5 +-
364 .../mgltools-pybabel-1.5.6_rc2.ebuild | 50 -
365 sci-chemistry/mgltools-pyglf/ChangeLog | 14 +
366 sci-chemistry/mgltools-pyglf/Manifest | 3 +-
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722 sci-mathematics/scilab/metadata.xml | 16 +-
723 sci-mathematics/scilab/scilab-5.3.3-r1.ebuild | 26 +-
724 sci-mathematics/scilab/scilab-5.4.0.ebuild | 19 +-
725 sci-mathematics/surfer/ChangeLog | 6 +-
726 sci-mathematics/surfer/Manifest | 2 +-
727 sci-mathematics/surfer/metadata.xml | 2 +-
728 sci-mathematics/surfer/surfer-0.0.197.ebuild | 21 +-
729 sci-mathematics/why/ChangeLog | 5 +-
730 sci-mathematics/why/Manifest | 6 +-
731 sci-mathematics/why/metadata.xml | 26 +-
732 sci-mathematics/why/why-2.30.ebuild | 74 +-
733 sci-mathematics/yorick/ChangeLog | 6 +-
734 sci-mathematics/yorick/Manifest | 2 +-
735 sci-mathematics/yorick/metadata.xml | 12 +-
736 sci-mathematics/yorick/yorick-2.1.06.ebuild | 29 +-
737 sci-misc/foma/ChangeLog | 6 +-
738 sci-misc/foma/foma-0.9.14_alpha.ebuild | 4 +-
739 sci-misc/foma/foma-0.9.16_alpha.ebuild | 4 +-
740 sci-misc/foma/metadata.xml | 6 +-
741 sci-misc/hfst/ChangeLog | 6 +-
742 sci-misc/hfst/hfst-3.0.2.ebuild | 4 +-
743 sci-misc/hfst/hfst-3.3.12.ebuild | 6 +-
744 sci-misc/hfst/metadata.xml | 16 +-
745 sci-misc/openfst/ChangeLog | 6 +-
746 sci-misc/openfst/metadata.xml | 6 +-
747 sci-misc/openfst/openfst-1.2.7.ebuild | 4 +-
748 sci-misc/openfst/openfst-1.3.2.ebuild | 4 +-
749 sci-misc/praat/ChangeLog | 6 +-
750 sci-misc/praat/Manifest | 4 +-
751 sci-misc/praat/metadata.xml | 8 +-
752 sci-misc/praat/praat-5.1.00.ebuild | 23 +-
753 sci-misc/praat/praat-5.1.15.ebuild | 23 +-
754 sci-misc/salome-component/ChangeLog | 6 +-
755 sci-misc/salome-component/Manifest | 4 +-
756 sci-misc/salome-component/metadata.xml | 2 +-
757 .../salome-component/salome-component-5.1.3.ebuild | 8 +-
758 .../salome-component/salome-component-5.1.4.ebuild | 8 +-
759 sci-misc/salome-geom/ChangeLog | 6 +-
760 sci-misc/salome-geom/Manifest | 4 +-
761 sci-misc/salome-geom/metadata.xml | 2 +-
762 sci-misc/salome-geom/salome-geom-5.1.3.ebuild | 10 +-
763 sci-misc/salome-geom/salome-geom-5.1.4.ebuild | 10 +-
764 sci-misc/salome-gui/ChangeLog | 6 +-
765 sci-misc/salome-gui/Manifest | 4 +-
766 sci-misc/salome-gui/metadata.xml | 2 +-
767 sci-misc/salome-gui/salome-gui-5.1.3.ebuild | 10 +-
768 sci-misc/salome-gui/salome-gui-5.1.4.ebuild | 10 +-
769 sci-misc/salome-med/ChangeLog | 6 +-
770 sci-misc/salome-med/Manifest | 4 +-
771 sci-misc/salome-med/metadata.xml | 10 +-
772 sci-misc/salome-med/salome-med-5.1.3.ebuild | 8 +-
773 sci-misc/salome-med/salome-med-5.1.4.ebuild | 8 +-
774 sci-misc/salome-smesh/ChangeLog | 6 +-
775 sci-misc/salome-smesh/Manifest | 4 +-
776 sci-misc/salome-smesh/metadata.xml | 2 +-
777 sci-misc/salome-smesh/salome-smesh-5.1.3.ebuild | 8 +-
778 sci-misc/salome-smesh/salome-smesh-5.1.4.ebuild | 8 +-
779 sci-misc/salome-visu/ChangeLog | 6 +-
780 sci-misc/salome-visu/Manifest | 4 +-
781 sci-misc/salome-visu/metadata.xml | 2 +-
782 sci-misc/salome-visu/salome-visu-5.1.3.ebuild | 8 +-
783 sci-misc/salome-visu/salome-visu-5.1.4.ebuild | 8 +-
784 sci-misc/salome-yacs/ChangeLog | 6 +-
785 sci-misc/salome-yacs/Manifest | 4 +-
786 sci-misc/salome-yacs/metadata.xml | 2 +-
787 sci-misc/salome-yacs/salome-yacs-5.1.3.ebuild | 8 +-
788 sci-misc/salome-yacs/salome-yacs-5.1.4.ebuild | 8 +-
789 sci-misc/sfst/ChangeLog | 6 +-
790 sci-misc/sfst/metadata.xml | 10 +-
791 sci-misc/sfst/sfst-1.4.2.ebuild | 4 +-
792 sci-misc/sfst/sfst-1.4.6g.ebuild | 4 +-
793 sci-physics/abinit/ChangeLog | 13 +
794 sci-physics/abinit/Manifest | 2 +-
795 sci-physics/abinit/abinit-7.0.4.ebuild | 27 +-
796 ...abinit-6.12.3-r2.ebuild => abinit-7.0.5.ebuild} | 63 +-
797 sci-physics/abinit/metadata.xml | 74 +-
798 sci-physics/atompaw/ChangeLog | 5 +
799 sci-physics/atompaw/atompaw-3.0.1.9.ebuild | 14 +-
800 sci-physics/atompaw/metadata.xml | 14 +-
801 sci-physics/atompaw2abinit/ChangeLog | 7 +-
802 sci-physics/atompaw2abinit/Manifest | 2 +-
803 .../atompaw2abinit/atompaw2abinit-3.3.0-r1.ebuild | 19 +-
804 sci-physics/atompaw2abinit/metadata.xml | 8 +-
805 sci-physics/elk/ChangeLog | 6 +-
806 sci-physics/elk/elk-1.4.22.ebuild | 92 +-
807 sci-physics/elk/metadata.xml | 10 +-
808 sci-physics/espresso/ChangeLog | 5 +-
809 sci-physics/espresso/espresso-9999.ebuild | 14 +-
810 sci-physics/herwig++/ChangeLog | 7 +
811 sci-physics/herwig++/Manifest | 2 +-
812 ...ptools.patch => herwig++-2.6.3-looptools.patch} | 0
813 ...herwig++-2.6.2.ebuild => herwig++-2.6.3.ebuild} | 2 +-
814 sci-physics/openmx/ChangeLog | 8 +
815 .../phenix-bin => sci-physics/openmx}/metadata.xml | 0
816 sci-physics/openmx/openmx-3.6.ebuild | 42 +-
817 sci-physics/root/ChangeLog | 10 +
818 sci-physics/root/Manifest | 4 +-
819 .../root/files/root-5.34.05-nobyte-compile.patch | 137 +
820 sci-physics/root/metadata.xml | 38 +-
821 .../{root-5.34.03.ebuild => root-5.34.05.ebuild} | 19 +-
822 sci-physics/root/root-9999.ebuild | 12 +-
823 sci-physics/thepeg/ChangeLog | 7 +
824 sci-physics/thepeg/Manifest | 6 +-
825 ...eg-1.8.2-java.patch => thepeg-1.8.3-java.patch} | 0
826 .../{thepeg-1.8.2.ebuild => thepeg-1.8.3.ebuild} | 2 +-
827 sci-visualization/ferret-bin/ChangeLog | 7 +-
828 sci-visualization/ferret-bin/Manifest | 10 +-
829 .../ferret-bin/ferret-bin-6.6.4.ebuild | 52 +-
830 sci-visualization/ferret-bin/metadata.xml | 12 +-
831 sci-visualization/gnuplot/ChangeLog | 18 +-
832 sci-visualization/gnuplot/gnuplot-4.6.9999.ebuild | 213 +-
833 sci-visualization/gnuplot/gnuplot-4.7.9999.ebuild | 202 +-
834 sci-visualization/gnuplot/metadata.xml | 26 +-
835 sci-visualization/paraview/ChangeLog | 6 +-
836 sci-visualization/paraview/metadata.xml | 36 +-
837 sci-visualization/paraview/paraview-3.10.1.ebuild | 28 +-
838 sci-visualization/paraview/paraview-3.12.0.ebuild | 26 +-
839 .../paraview/paraview-3.14.1-r4.ebuild | 16 +-
840 sci-visualization/v_sim/ChangeLog | 6 +-
841 sci-visualization/v_sim/Manifest | 4 +-
842 sci-visualization/v_sim/metadata.xml | 26 +-
843 sci-visualization/v_sim/v_sim-3.5.1.ebuild | 80 -
844 sci-visualization/v_sim/v_sim-3.5.2.ebuild | 87 -
845 sci-visualization/v_sim/v_sim-3.6.0.ebuild | 4 +-
846 sci-visualization/yt/yt-9999.ebuild | 3 +-
847 skel.ChangeLog | 8022 +++++++
848 sys-cluster/blcr/ChangeLog | 5 +-
849 sys-cluster/blcr/blcr-0.8.4.ebuild | 3 +-
850 sys-cluster/blcr/metadata.xml | 4 +-
851 sys-cluster/empi/ChangeLog | 10 +-
852 .../empi/{empi-0.7.ebuild => empi-0.8.ebuild} | 2 +-
853 sys-cluster/empi/files/ChangeLog-0.7 | 164 -
854 sys-cluster/empi/files/ChangeLog-0.8 | 68 +
855 sys-cluster/empi/files/empi-0.7 | 408 -
856 sys-cluster/empi/files/empi-0.8 | 492 +
857 .../files/{eselect.mpi-0.7 => eselect.mpi-0.8} | 2 +-
858 sys-cluster/hpl/ChangeLog | 9 +-
859 sys-cluster/hpl/Manifest | 2 +-
860 sys-cluster/hpl/hpl-2.0-r1.ebuild | 20 +-
861 sys-cluster/hpl/metadata.xml | 12 +-
862 sys-cluster/lustre/ChangeLog | 333 +
863 ...ld-make-AC-check-for-linux-arch-sandbox-f.patch | 95 +
864 ...rnel-3.0-SuSE-and-3.6-FC18-server-patches.patch | 21302 +++++++++++++++++++
865 ...nel-sock_map_fd-replaced-by-sock_alloc_fi.patch | 137 +
866 ...6-kernel-Kernel-update-for-3.7.2-201.fc18.patch | 184 +
867 ...pat-posix_acl_-to-from-_xattr-take-user_n.patch | 159 +
868 ...006-LU-2800-llite-introduce-local-getname.patch | 91 +
869 .../files/0007-LU-2987-llite-rcu-free-inode.patch | 89 +
870 ...50-kernel-3.8-upstream-removes-vmtruncate.patch | 83 +
871 ...-2850-kernel-3.8-upstream-kills-daemonize.patch | 2966 +++
872 ...rnel-3.9-hlist_for_each_entry-uses-3-args.patch | 115 +
873 ...79-kernel-f_vfsmnt-replaced-by-f_path.mnt.patch | 82 +
874 ...fids-fix-compilation-error-with-gcc-4.7.2.patch | 29 +
875 ...7-build-zfs-0.6.1-kmod-dkms-compatibility.patch | 1038 +
876 sys-cluster/lustre/lustre-9999.ebuild | 94 +-
877 sys-cluster/lustre/metadata.xml | 3 +
878 sys-cluster/mvapich2/ChangeLog | 7 +
879 sys-cluster/mvapich2/Manifest | 2 +-
880 sys-cluster/mvapich2/mvapich2-1.6-r1.ebuild | 4 +-
881 sys-cluster/openmpi/ChangeLog | 6 +
882 sys-cluster/openmpi/Manifest | 2 +-
883 .../{openmpi-1.6.3.ebuild => openmpi-1.6.4.ebuild} | 7 +-
884 sys-cluster/ovis/ChangeLog | 5 +-
885 sys-cluster/ovis/metadata.xml | 10 +-
886 sys-cluster/ovis/ovis-3.0.1.ebuild | 6 +-
887 virtual/blas/ChangeLog | 2 +-
888 virtual/lapack/ChangeLog | 8 +-
889 virtual/lapack/lapack-3.3.ebuild | 23 -
890 virtual/lapack/lapack-3.4.ebuild | 23 +
891 virtual/lapack/metadata.xml | 3 +-
892 virtual/scalapack/ChangeLog | 9 +-
893 virtual/scalapack/metadata.xml | 4 +-
894 .../{scalapack-1.8.ebuild => scalapack-2.0.ebuild} | 6 +-
895 x11-libs/xview-bin/ChangeLog | 9 +-
896 x11-libs/xview-bin/Manifest | 2 +-
897 x11-libs/xview-bin/metadata.xml | 10 +-
898 x11-libs/xview-bin/xview-bin-3.2_p1428.ebuild | 6 +-
899 x11-libs/xview/ChangeLog | 12 +-
900 x11-libs/xview/Manifest | 1 +
901 x11-libs/xview/metadata.xml | 10 +-
902 x11-libs/xview/xview-3.2-r6.ebuild | 4 +-
903 x11-libs/xview/xview-3.2-r7.ebuild | 4 +-
904 .../{xview-3.2-r7.ebuild => xview-3.2-r8.ebuild} | 8 +-
905 894 files changed, 42959 insertions(+), 9213 deletions(-)