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commit: 4a01263f019d66b8e42c4caa45f33a4fae99fb2e |
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Author: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> |
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AuthorDate: Tue Jan 26 21:19:37 2021 +0000 |
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Commit: Andrew Ammerlaan <andrewammerlaan <AT> riseup <DOT> net> |
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CommitDate: Tue Jan 26 21:19:37 2021 +0000 |
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URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=4a01263f |
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|
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sci-biology/somatic-sniper: remove pack, archived upstream |
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does not build, needs static libs of samtools |
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Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> riseup.net> |
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sci-biology/somatic-sniper/metadata.xml | 15 ------------ |
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.../somatic-sniper/somatic-sniper-1.0.4.ebuild | 28 ---------------------- |
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2 files changed, 43 deletions(-) |
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diff --git a/sci-biology/somatic-sniper/metadata.xml b/sci-biology/somatic-sniper/metadata.xml |
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deleted file mode 100644 |
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index ff905cc3e..000000000 |
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--- a/sci-biology/somatic-sniper/metadata.xml |
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+++ /dev/null |
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@@ -1,15 +0,0 @@ |
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-<?xml version="1.0" encoding="UTF-8"?> |
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-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
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-<pkgmetadata> |
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- <maintainer type="person"> |
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- <email>mmokrejs@×××××××××××××××.cz</email> |
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- <name>Martin Mokrejs</name> |
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- </maintainer> |
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- <maintainer type="project"> |
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- <email>sci-biology@g.o</email> |
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- <name>Gentoo Biology Project</name> |
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- </maintainer> |
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- <upstream> |
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- <remote-id type="github">genome/somatic-sniper</remote-id> |
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- </upstream> |
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-</pkgmetadata> |
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|
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diff --git a/sci-biology/somatic-sniper/somatic-sniper-1.0.4.ebuild b/sci-biology/somatic-sniper/somatic-sniper-1.0.4.ebuild |
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deleted file mode 100644 |
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index 51a4b9db8..000000000 |
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--- a/sci-biology/somatic-sniper/somatic-sniper-1.0.4.ebuild |
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+++ /dev/null |
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@@ -1,28 +0,0 @@ |
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-# Copyright 1999-2018 Gentoo Foundation |
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-# Distributed under the terms of the GNU General Public License v2 |
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- |
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-EAPI=5 |
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- |
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-inherit cmake-utils |
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- |
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-DESCRIPTION="Compare BAM files from normal and tumor samples and report somatic SNPs" |
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-HOMEPAGE="http://gmt.genome.wustl.edu" |
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-SRC_URI="https://github.com/genome/somatic-sniper/archive/v${PV}.tar.gz -> ${P}.tar.gz" |
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-# git clone https://github.com/genome/somatic-sniper.git |
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- |
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-LICENSE="MIT" |
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-SLOT="0" |
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-KEYWORDS="~amd64" |
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-IUSE="" |
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- |
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-DEPEND=" |
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- sys-libs/zlib |
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- sys-libs/ncurses:* |
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- sci-biology/samtools:0.1-legacy" |
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-RDEPEND="${DEPEND}" |
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- |
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-# contains bundled copy of samtools-0.1.6 but links using a static version |
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-# cd /var/tmp/portage/sci-biology/somatic-sniper-1.0.4/work/somatic-sniper-1.0.4_build/build/src/exe/bam-somaticsniper && /usr/bin/cmake -E cmake_link_script CMakeFiles/bam-somaticsniper.dir/link.txt --verbose=1 |
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-# /usr/bin/x86_64-pc-linux-gnu-gcc -Wall -Wl,-O1 -Wl,--as-needed CMakeFiles/bam-somaticsniper.dir/main.c.o -o ../../../../bin/bam-somaticsniper -rdynamic -lpthread -lpthread ../../lib/sniper/libsniper.a -lpthread -lm ../../../../vendor/samtools/libbam.a -lz |
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- |
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-# contains build-common from git tree |
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