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commit: 7aeedc7043c24cdc56d9c48be571ff21bfc7e1c5 |
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Author: Nicolas Bock <nicolasbock <AT> gentoo <DOT> org> |
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AuthorDate: Wed Dec 2 13:26:18 2015 +0000 |
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Commit: Nicolas Bock <nicolasbock <AT> gentoo <DOT> org> |
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CommitDate: Wed Dec 2 13:26:18 2015 +0000 |
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URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=7aeedc70 |
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|
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sci-physics/lammps: Version bump |
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|
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Package-Manager: portage-2.2.20.1 |
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|
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sci-physics/lammps/Manifest | 1 + |
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sci-physics/lammps/lammps-20151120.ebuild | 213 ++++++++++++++++++++++++++++++ |
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2 files changed, 214 insertions(+) |
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|
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diff --git a/sci-physics/lammps/Manifest b/sci-physics/lammps/Manifest |
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index 804df4e..c6b1c2d 100644 |
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--- a/sci-physics/lammps/Manifest |
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+++ b/sci-physics/lammps/Manifest |
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@@ -2,6 +2,7 @@ DIST lammps-10Aug15.tar.gz 87890369 SHA256 450a765f94b70a6f38637854f1d7496dca98d |
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DIST lammps-10Feb15.tar.gz 62912048 SHA256 59373e9b5592f7b697a144bbce1fb742726e03536b7bb355dac7a9e013ddf9b8 SHA512 a7804377a23f03f338bdaf443439dffcdc52293b4c45e6369b340a1107510fed0b8a198e3b5afcff2e04e109985b52ee62e7b28276697bae37ac6f783d1ab9f2 WHIRLPOOL 09f29cadf8b072d388abe45ec219341d2a14a6c9cc9e4010a0f7945e930e9984738f7837748d117ab95ca76ce0c8d9160fe88dcec17e8d21b81f385dec8f7005 |
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DIST lammps-11Sep15.tar.gz 87274144 SHA256 79a40bc395a9052345cf1c7caa8da69f6ec0603e0be09503b060c51672a9734f SHA512 a478470d6e90c870dad606649009c085451d3890632dfc05a84890ff9d69e8465eff52d4853b4dc4a82ebcb15074c8f2fd07bbde132404a01c1c5df0867ee3f2 WHIRLPOOL 21225df1baadd02dbdc9f0b7aea6a2323ac1a1ac177453b67d5387b87a711e505395d17efada9ca5d079d919842da69c6d41d9a3a6ec6375d8526c3ed32f8ad3 |
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DIST lammps-15May15.tar.gz 63835027 SHA256 0233ea98c7d77d31bd0a538bb674c0ee8f000f1d0ee1b8c049072873192aa228 SHA512 a23c16b98117590b15ca7662b878fb2f76ec41399c329c98deb48e28a0ffce293443269513a96c2503389894b598787b19dadc210d4b4dbc6a7432caf633e7d1 WHIRLPOOL 4c4edfd772bbf534e42fc43e1feaf3b8f76e74c58ec1e985e3c29ee0d8e64aa8c501b8e45e078643409c320a1d834b0d5eb699e7d1ec29df06be0126d12492f1 |
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+DIST lammps-20Nov15.tar.gz 90227651 SHA256 7c392c848e73335226b2fef6bb8034b1152f91862d955a3bae00502bf9d8e8fe SHA512 4bff70e45fb30be10a33b4c6c60b73cceddf8d42588b0630b4802f1e61dea3c237c01c3667585ad210ef2cdb811491b1b8495718a90bb57853c58245e29d1fe4 WHIRLPOOL a01f54911a5edb666ef5af5302cf60d61d58d20f2112578e4d7bd16787b2bf59da09e9fe7ffa021fb6a97db40b23301ed77010f48a05e5471742c0e71413b7e1 |
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DIST lammps-22Oct15.tar.gz 87938562 SHA256 8376b52e8eef4d1c3628c15ff358ecf74303e308566f41fd055701f6af3b6484 SHA512 cbe61420cccd11cd444423214802dfd2d1b2b1b28511a53dbf22e993fa3592404e8dda29fcb7bcd4e6e2d1e2251ddc6f020d48bafa66c8fceaa27d4af2e21640 WHIRLPOOL 11d09b18ff742d6ac4fcb400df93d7ac29144ee554f7241e58da80d039a99ef23b4b81709170ed12215693de97b6b48c9a6967d7d0539fd7f2f172a1e0a83661 |
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DIST lammps-23Oct15.tar.gz 87933918 SHA256 3500cdeb22344c7f3a040834a232d6c5ddb9f601820794441fcc24dadedc49b6 SHA512 a26d214b3e7c47d63cf00a364753a829d1c8f0cf4f8b73e829a4463650303d6905b6c942df5890387413b44496c8615b286296b34df9181e54806bb2f361b39a WHIRLPOOL 9a2d6e8fb57f1af2969345d9b250ed1244d2e40c97d5e2994c0ef6225ca265b490809848faa7cdc29a3eaa7c51a6223320039863f6c382a1a51da6f474e52088 |
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DIST lammps-24Sep15.tar.gz 87307191 SHA256 e03cdeb2b3b6107d98969febea26575c85590603ab4f79d26efc46bac6d6cc60 SHA512 356dd556f845cec456865062375120c0898cef1870617d80b31b0e8e964585140120b21f891cd9b40ecde7aaf43beb34d7b15396830e08273624a9b14da551e4 WHIRLPOOL 667b8aaf927d268c569a192c835b7dbdc80a0f25abb1f2c96007517ea218a69b2816dde4ebe28ca82974d01472c0e1126b67e89a19fb3ef49e4020f3d9c69fba |
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|
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diff --git a/sci-physics/lammps/lammps-20151120.ebuild b/sci-physics/lammps/lammps-20151120.ebuild |
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new file mode 100644 |
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index 0000000..55f834d |
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--- /dev/null |
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+++ b/sci-physics/lammps/lammps-20151120.ebuild |
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@@ -0,0 +1,213 @@ |
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+# Copyright 1999-2015 Gentoo Foundation |
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+# Distributed under the terms of the GNU General Public License v2 |
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+# $Id$ |
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+ |
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+EAPI=5 |
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+ |
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+PYTHON_COMPAT=( python{2_7,3_3,3_4} ) |
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+ |
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+inherit eutils flag-o-matic fortran-2 multilib python-r1 |
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+ |
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+convert_month() { |
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+ local months=( "" Jan Feb Mar Apr May Jun Jul Aug Sep Oct Nov Dec ) |
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+ echo ${months[${1#0}]} |
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+} |
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+ |
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+MY_P=${PN}-$((10#${PV:6:2}))$(convert_month ${PV:4:2})${PV:2:2} |
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+ |
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+DESCRIPTION="Large-scale Atomic/Molecular Massively Parallel Simulator" |
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+HOMEPAGE="http://lammps.sandia.gov/" |
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+SRC_URI="http://lammps.sandia.gov/tars/${MY_P}.tar.gz" |
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+ |
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+LICENSE="GPL-2" |
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+SLOT="0" |
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+KEYWORDS="~amd64 ~x86" |
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+IUSE="doc examples gzip lammps-memalign mpi python static-libs" |
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+ |
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+DEPEND=" |
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+ mpi? ( |
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+ virtual/blas |
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+ virtual/lapack |
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+ virtual/mpi |
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+ ) |
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+ gzip? ( app-arch/gzip ) |
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+ sci-libs/voro++ |
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+ python? ( ${PYTHON_DEPS} ) |
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+ " |
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+RDEPEND="${DEPEND}" |
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+ |
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+REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )" |
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+ |
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+S="${WORKDIR}/${MY_P}" |
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+ |
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+lmp_emake() { |
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+ local LAMMPS_INCLUDEFLAGS |
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+ LAMMPS_INCLUDEFLAGS="$(usex gzip '-DLAMMPS_GZIP' '')" |
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+ LAMMPS_INCLUDEFLAGS+="$(usex lammps-memalign ' -DLAMMPS_MEMALIGN=64' '')" |
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+ |
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+ # The lammps makefile uses CC to indicate the C++ compiler. |
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+ emake \ |
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+ ARCHIVE="$(tc-getAR)" \ |
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+ CC="$(usex mpi "mpic++" "$(tc-getCXX)")" \ |
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+ F90="$(usex mpi "mpif90" "$(tc-getFC)")" \ |
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+ LINK="$(usex mpi "mpic++" "$(tc-getCXX)")" \ |
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+ CCFLAGS="${CXXFLAGS}" \ |
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+ F90FLAGS="${FCFLAGS}" \ |
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+ LINKFLAGS="${LDFLAGS}" \ |
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+ LMP_INC="${LAMMPS_INCLUDEFLAGS}" \ |
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+ MPI_INC="$(usex mpi "" "-I../STUBS")" \ |
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+ MPI_PATH="$(usex mpi "" "-L../STUBS")" \ |
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+ MPI_LIB="$(usex mpi "" "-lmpi_stubs")" \ |
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+ user-atc_SYSLIB="$(usex mpi "$($(tc-getPKG_CONFIG) --libs blas) $($(tc-getPKG_CONFIG) --libs lapack)" '')"\ |
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+ "$@" |
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+} |
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+ |
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+lmp_activate_packages() { |
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+ # Build packages |
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+ local packages=( yes-asphere yes-body yes-class2 yes-colloid \ |
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+ yes-coreshell yes-dipole yes-fld yes-granular yes-kspace \ |
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+ yes-manybody yes-mc yes-meam yes-misc \ |
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+ $(usex mpi "yes-user-atc" "") \ |
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+ yes-molecule yes-opt yes-peri yes-poems yes-qeq yes-reax \ |
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+ yes-replica yes-rigid yes-shock yes-snap yes-srd \ |
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+ yes-user-eff yes-user-fep \ |
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+ $(usex mpi "yes-user-lb" "") \ |
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+ yes-user-phonon yes-user-sph yes-voronoi yes-xtc ) |
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+ |
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+ for p in ${packages[@]}; do |
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+ lmp_emake -C src ${p} |
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+ done |
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+} |
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+ |
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+lmp_build_packages() { |
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+ lmp_emake -C lib/meam -j1 -f Makefile.gfortran |
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+ lmp_emake -C lib/poems -f Makefile.g++ |
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+ lmp_emake -C lib/reax -j1 -f Makefile.gfortran |
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+ use mpi && lmp_emake -C lib/atc -f Makefile.g++ |
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+} |
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+ |
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+lmp_clean_packages() { |
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+ lmp_emake -C lib/meam -f Makefile.gfortran clean |
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+ lmp_emake -C lib/poems -f Makefile.g++ clean |
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+ lmp_emake -C lib/reax -f Makefile.gfortran clean |
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+ use mpi && lmp_emake -C lib/atc -f Makefile.g++ clean |
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+} |
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+ |
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+src_prepare() { |
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+ # Fix inconsistent use of SHFLAGS. |
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+ sed -i \ |
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+ -e 's:voronoi_SYSINC\s\+=.*$:voronoi_SYSINC = -I/usr/include/voro++:' \ |
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+ -e 's:voronoi_SYSPATH\s\+=.*$:voronoi_SYSPATH =:' \ |
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+ lib/voronoi/Makefile.lammps || die |
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+ |
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+ # Fix missing .so name. |
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+ sed -i \ |
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+ -e 's:SHLIBFLAGS\s\+=\s\+:SHLIBFLAGS = -Wl,-soname,liblammps.so.0 :' \ |
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+ src/MAKE/Makefile.serial || die |
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+ |
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+ # Fix makefile in tools. |
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+ sed -i \ |
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+ -e 's:g++:$(CXX) $(CXXFLAGS):' \ |
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+ -e 's:gcc:$(CC) $(CCFLAGS):' \ |
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+ -e 's:ifort:$(FC) $(FCFLAGS):' \ |
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+ tools/Makefile || die |
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+ |
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+ # Patch python. |
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+ epatch "${FILESDIR}/lammps-python3-r1.patch" |
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+ epatch "${FILESDIR}/python-shebang.patch" |
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+} |
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+ |
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+src_compile() { |
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+ # Fix atc... |
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+ append-cxxflags -I../../src |
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+ |
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+ # Acticate packages. |
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+ elog "Activating lammps packages..." |
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+ lmp_activate_packages |
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+ |
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+ # Compile stubs for serial version. |
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+ use mpi || lmp_emake -C src mpi-stubs |
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+ |
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+ elog "Building packages..." |
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+ lmp_build_packages |
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+ |
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+ if use static-libs; then |
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+ # Build static library. |
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+ elog "Building static library..." |
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+ lmp_emake -C src mode=lib serial |
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+ fi |
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+ |
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+ # Clean out packages (that's not done by the build system with the clean |
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+ # target), so we can rebuild the packages with -fPIC. |
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+ elog "Cleaning packages..." |
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+ lmp_clean_packages |
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+ |
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+ # The build system does not rebuild the packages with -fPIC, adding flag |
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+ # manually. |
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+ append-cxxflags -fPIC |
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+ append-fflags -fPIC |
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+ |
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+ # Compile stubs for serial version. |
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+ use mpi || lmp_emake -C src mpi-stubs |
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+ |
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+ elog "Building packages..." |
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+ lmp_build_packages |
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+ |
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+ # Build shared library. |
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+ elog "Building shared library..." |
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+ lmp_emake -C src mode=shlib serial |
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+ |
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+ # Compile main executable. The shared library is always built, and |
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+ # mode=shexe is simply a way to re-use the object files built in the |
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+ # "shlib" step when linking the executable. The executable is not actually |
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+ # using the shared library. If we have built the static library, then we |
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+ # link that into the executable. |
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+ elog "Linking executable..." |
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+ if use static-libs; then |
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+ lmp_emake -C src mode=exe serial |
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+ else |
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+ lmp_emake -C src mode=shexe serial |
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+ fi |
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+ |
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+ # Compile tools. |
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+ elog "Building tools..." |
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+ lmp_emake -C tools binary2txt chain data2xmovie micelle2d |
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+} |
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+ |
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+src_install() { |
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+ use static-libs && newlib.a src/liblammps_serial.a liblammps.a |
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+ newlib.so src/liblammps_serial.so liblammps.so.0.0.0 |
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+ dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so |
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+ dosym liblammps.so.0.0.0 /usr/$(get_libdir)/liblammps.so.0 |
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+ newbin src/lmp_serial lmp |
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+ dobin tools/binary2txt |
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+ dobin tools/chain |
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+ dobin tools/data2xmovie |
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+ dobin tools/micelle2d |
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+ # Don't forget to add header files of optional packages as they are added |
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+ # to this ebuild. There may also be .mod files from Fortran based |
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+ # packages. |
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+ insinto "/usr/include/${PN}" |
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+ doins -r src/*.h lib/meam/*.mod |
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+ |
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+ local LAMMPS_POTENTIALS="usr/share/${PN}/potentials" |
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+ insinto "/${LAMMPS_POTENTIALS}" |
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+ doins potentials/* |
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+ echo "LAMMPS_POTENTIALS=${EROOT}${LAMMPS_POTENTIALS}" > 99lammps |
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+ doenvd 99lammps |
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+ |
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+ # Install python script. |
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+ use python && python_foreach_impl python_domodule python/lammps.py |
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+ |
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+ if use examples; then |
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+ local LAMMPS_EXAMPLES="/usr/share/${PN}/examples" |
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+ insinto "${LAMMPS_EXAMPLES}" |
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+ doins -r examples/* |
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+ fi |
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+ |
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+ dodoc README |
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+ if use doc; then |
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+ dodoc doc/Manual.pdf |
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+ dohtml -r doc/* |
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+ fi |
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+} |