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commit: d3b73b4b2ba690e533be8866c1f8b3caef9f59e3 |
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Author: Sam James <sam <AT> gentoo <DOT> org> |
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AuthorDate: Sat Nov 6 05:52:40 2021 +0000 |
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Commit: Sam James <sam <AT> gentoo <DOT> org> |
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CommitDate: Sat Nov 6 05:53:07 2021 +0000 |
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URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=d3b73b4b |
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|
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dev-python/scipy: add 1.7.2 |
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|
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Signed-off-by: Sam James <sam <AT> gentoo.org> |
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|
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dev-python/scipy/Manifest | 3 + |
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dev-python/scipy/scipy-1.7.2.ebuild | 185 ++++++++++++++++++++++++++++++++++++ |
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2 files changed, 188 insertions(+) |
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|
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diff --git a/dev-python/scipy/Manifest b/dev-python/scipy/Manifest |
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index c8c120cd8eb..8219933ad78 100644 |
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--- a/dev-python/scipy/Manifest |
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+++ b/dev-python/scipy/Manifest |
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@@ -1,7 +1,10 @@ |
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DIST scipy-1.6.2.tar.gz 27187804 BLAKE2B af3578bc029c3af548c04144d7405ac8e6f8e057f870394e124f24aea9989120275407e5a7fdd29fbe1019d2acc295c1ce00872461ecf3a325000e8817cd559f SHA512 18b03f32e8343c5a6c6148ac0bfd4b5f2cc9ff5f74d5d41761ae9e773d6af8774c7b09a3fcc47122864eccce1dbbc17e9325819885d3fc3ab2baf98e7d3befa4 |
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DIST scipy-1.6.3.tar.gz 27187987 BLAKE2B 30f7171ca0dc0842f254472f4b52c0b0ad4389964a140cc4b94f9d85437c5a7da238c082be503242d433f1d3c65c3fd4afeb2f7831eea39ce303077406e718df SHA512 10ff25da84ce09ae231e781873902d8040d79868721d75a3f9facee177e7f46f7c9c34374feee6fe2253ddd968716d2993658ce514c4ac0c98d255c06a6ef808 |
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DIST scipy-1.7.1.tar.gz 36102628 BLAKE2B 67a414d863c61bf419fa907b9bed53b57beedc20d71d0630fac9719f02e951ea79b893d0803b385936a7c04a6c2f723d3870f0498f71e3c210ccd6ee75a009dc SHA512 81fea7e4f5fbcd537d662273507b6ac75bd4cf900567da8083ac86fb06d9f96b010d01a1697db53211440f0fdb2d89510313bafd3d383284d0ab9a08311dd102 |
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+DIST scipy-1.7.2.tar.gz 36104529 BLAKE2B 8e31a71e8cd69a83e1b60747a01e34f79e42664089a2c41aa263c1697a689464fde0b467063e0ae3bafa37721294a79e21d0eedc6023c1558aea6e0105aefeae SHA512 87596430571ff2a43f067eaaf3254c0841dac82b9152cb64040f1a4d9bc5429aebc31c619ce55d74727f2a79567dfef4acbc6252c24c46d3c8849f97e6e8cfef |
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DIST scipy-html-1.6.1.zip 23946591 BLAKE2B d3464c342b1d4f43e17e214c7557737913bf4131f88b9d569cff106c75dc7ebf0d065283792fddc189e2a3ddc322f1b2b4f38c6d313569f28395e79680060b58 SHA512 73561f9daa303c6e967f9b11952c6239dea7ff1a2fa02434354ac78fcffe7a552aa0f1043a17cb5c35a442def499eff199856cca8efa1415449cbf54f0d4913b |
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DIST scipy-html-1.6.2.zip 23947380 BLAKE2B e4616a157c037b0830fc32d23678fb7e8ebe023d1fd9f0f762695a0d93bc56e432e441e675ec3c7a7d6586a665f6127ce49d570f1716876e58afb402761f8e95 SHA512 119a2227a808c752a751bc7bec6463da739c68391ebac8d2451998d90ebe03b2af401adbf987f0b694244e715c0ef1fd86c2f4a36c48dbb1ff7cdf4d914875df |
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+DIST scipy-html-1.7.1.zip 32435246 BLAKE2B fd8173da41aba95a14b1376f848bc668c4659bf1bbbdd0f87d926633d36f29c039957d38be145a5583010ebd83f6458090f75bdad773cc0f1591664e13c04c20 SHA512 ee59722878f6ef2d2319cdf4e6a60d3d1184f7c22752f9a8859eaa46fb677ebac9e8eef9c0826998e12bac9399e336799843341ef203224a82c9101347149672 |
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DIST scipy-ref-1.6.1.pdf 34594740 BLAKE2B 905ddcd7a3d462b09ded688f0818204d7684fa18058d0dac480d0a000e9ea0b7ebcdd33c01adae17234dcdf630d4aef9078174127af46f1db55d5c14b3245346 SHA512 355f4681439c1720f45dca6badfe72d77edfca0962fd9b42df34f1cd8fff7121fa6e7f60570bb638abd3ba9693930fa46b25af862d8fc1568b508c6fdd785479 |
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DIST scipy-ref-1.6.2.pdf 34599668 BLAKE2B 9ae3221c814eb0d1b1e9191e08000955af503f6448cf8b5841e400fad106c658670339219f4838bd312023601776fe0b0d123ebbd41460c478145da2ac3e9989 SHA512 9aecb7ca760805c470c41121268281c9547aef35ddf078816c5e48f7cf4912a67cf622e267152c6cc823df9d82be1f3a875d97469169d0d91d6219164c130c88 |
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+DIST scipy-ref-1.7.1.pdf 33542025 BLAKE2B 6c978f06b770805f0fae06db740e8596658d98bbbc93c865127eae909957503bb38e02a9c97319aed07608718f8f373374b1cf3a8c3bd624aa3143f1d21bc428 SHA512 45720dc299594bac5c7539f950a0ff135b125d86bfe9847032cbff1f294601fefd0a1ac3fd7e3928b2702390c318ae2f8adca6403ba06ea1ded705fcff94ab79 |
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|
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diff --git a/dev-python/scipy/scipy-1.7.2.ebuild b/dev-python/scipy/scipy-1.7.2.ebuild |
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new file mode 100644 |
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index 00000000000..7290265e9ab |
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--- /dev/null |
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+++ b/dev-python/scipy/scipy-1.7.2.ebuild |
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@@ -0,0 +1,185 @@ |
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+# Copyright 1999-2021 Gentoo Authors |
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+# Distributed under the terms of the GNU General Public License v2 |
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+ |
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+EAPI=7 |
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+ |
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+PYTHON_COMPAT=( python3_{8..10} ) |
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+PYTHON_REQ_USE="threads(+)" |
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+ |
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+inherit fortran-2 distutils-r1 flag-o-matic toolchain-funcs |
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+ |
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+# upstream is slacking forever with doc updates |
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+DOC_PV=1.7.1 |
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+DESCRIPTION="Scientific algorithms library for Python" |
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+HOMEPAGE="https://www.scipy.org/" |
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+SRC_URI=" |
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+ mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz |
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+ doc? ( |
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+ https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-html-${DOC_PV}.zip |
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+ https://docs.scipy.org/doc/${PN}-${DOC_PV}/${PN}-ref-${DOC_PV}.pdf |
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+ )" |
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+ |
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+LICENSE="BSD LGPL-2" |
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+SLOT="0" |
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+KEYWORDS="~amd64 ~arm ~arm64 ~ia64 ~riscv ~s390 ~sparc ~x86" |
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+IUSE="doc +pythran sparse" |
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+ |
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+DEPEND=" |
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+ >=dev-python/numpy-1.16.5[lapack,${PYTHON_USEDEP}] |
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+ sci-libs/arpack:0= |
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+ virtual/cblas |
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+ virtual/lapack |
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+ sparse? ( sci-libs/umfpack:0= )" |
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+RDEPEND="${DEPEND} |
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+ dev-python/pillow[${PYTHON_USEDEP}]" |
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+BDEPEND=" |
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+ dev-lang/swig |
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+ >=dev-python/cython-0.29.18[${PYTHON_USEDEP}] |
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+ dev-python/pybind11[${PYTHON_USEDEP}] |
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+ virtual/pkgconfig |
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+ doc? ( app-arch/unzip ) |
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+ pythran? ( dev-python/pythran[${PYTHON_USEDEP}] ) |
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+ test? ( |
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+ dev-python/nose[${PYTHON_USEDEP}] |
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+ )" |
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+ |
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+DISTUTILS_IN_SOURCE_BUILD=1 |
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+ |
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+distutils_enable_tests pytest |
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+ |
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+PATCHES=( |
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+ "${FILESDIR}"/${PN}-1.7.1-pythran-tests-32-bit.patch |
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+) |
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+ |
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+src_unpack() { |
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+ default |
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+ if use doc; then |
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+ unzip -qo "${DISTDIR}"/${PN}-html-${DOC_PV}.zip -d html || die |
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+ fi |
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+} |
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+ |
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+pc_incdir() { |
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+ $(tc-getPKG_CONFIG) --cflags-only-I $@ | \ |
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+ sed -e 's/^-I//' -e 's/[ ]*-I/:/g' -e 's/[ ]*$//' -e 's|^:||' |
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+} |
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+ |
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+pc_libdir() { |
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+ $(tc-getPKG_CONFIG) --libs-only-L $@ | \ |
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+ sed -e 's/^-L//' -e 's/[ ]*-L/:/g' -e 's/[ ]*$//' -e 's|^:||' |
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+} |
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+ |
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+pc_libs() { |
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+ $(tc-getPKG_CONFIG) --libs-only-l $@ | \ |
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+ sed -e 's/[ ]-l*\(pthread\|m\)\([ ]\|$\)//g' \ |
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+ -e 's/^-l//' -e 's/[ ]*-l/,/g' -e 's/[ ]*$//' \ |
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+ | tr ',' '\n' | sort -u | tr '\n' ',' | sed -e 's|,$||' |
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+} |
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+ |
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+python_prepare_all() { |
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+ # scipy automatically detects libraries by default |
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+ export {FFTW,FFTW3,UMFPACK}=None |
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+ use sparse && unset UMFPACK |
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+ # the missing symbols are in -lpythonX.Y, but since the version can |
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+ # differ, we just introduce the same scaryness as on Linux/ELF |
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+ [[ ${CHOST} == *-darwin* ]] \ |
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+ && append-ldflags -bundle "-undefined dynamic_lookup" \ |
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+ || append-ldflags -shared |
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+ [[ -z ${FC} ]] && export FC="$(tc-getFC)" |
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+ # hack to force F77 to be FC until bug #278772 is fixed |
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+ [[ -z ${F77} ]] && export F77="$(tc-getFC)" |
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+ export F90="${FC}" |
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+ export SCIPY_FCONFIG="config_fc --noopt --noarch" |
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+ append-fflags -fPIC |
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+ |
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+ local libdir="${EPREFIX}"/usr/$(get_libdir) |
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+ cat >> site.cfg <<-EOF || die |
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+ [blas] |
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+ include_dirs = $(pc_incdir cblas) |
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+ library_dirs = $(pc_libdir cblas blas):${libdir} |
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+ blas_libs = $(pc_libs cblas blas) |
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+ [lapack] |
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+ library_dirs = $(pc_libdir lapack):${libdir} |
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+ lapack_libs = $(pc_libs lapack) |
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+ EOF |
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+ cat >> setup.cfg <<-EOF || die |
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+ [options] |
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+ zip_safe = False |
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+ EOF |
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+ |
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+ # TODO |
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+ sed -e "s:== 'levy_stable':in ('levy_stable', 'crystalball', 'ncf'):" \ |
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+ -i scipy/stats/tests/test_continuous_basic.py || die |
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+ |
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+ # Skip known-failing test. Broken on all versions in Gentoo for years. |
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+ # bug #743295 |
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+ sed -e 's:test_bisplev_integer_overflow:_&:' \ |
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+ -i scipy/interpolate/tests/test_fitpack.py || die |
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+ |
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+ # Skip a few 32-bit related failures |
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+ if use x86 ; then |
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+ # TODO: Tidy this up and switch to epytest |
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+ sed -i -e 's:test_nd_axis_m1:_&:' \ |
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+ -e 's:test_nd_axis_0:_&:' \ |
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+ -e 's:test_maxiter_worsening:_&:' \ |
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+ -e 's:test_pdist_jensenshannon_iris:_&:' \ |
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+ -e 's:test_align_vectors_single_vector:_&:' \ |
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+ scipy/signal/tests/test_spectral.py \ |
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+ scipy/sparse/linalg/isolve/tests/test_iterative.py \ |
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+ scipy/spatial/tests/test_distance.py \ |
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+ scipy/spatial/transform/tests/test_rotation.py || die |
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+ fi |
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+ |
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+ if has_version ">=sci-libs/lapack-3.10"; then |
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+ sed -e 's:test_sort(:_&:' \ |
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+ -i scipy/linalg/tests/test_decomp.py || die |
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+ sed -e 's:test_solve_discrete_are:_&:' \ |
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+ -i scipy/linalg/tests/test_solvers.py || die |
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+ fi |
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+ |
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+ distutils-r1_python_prepare_all |
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+} |
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+ |
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+python_configure_all() { |
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+ export SCIPY_USE_PYTHRAN=$(usex pythran 1 0) |
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+ |
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+ # bug 721860 |
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+ test-flag-FC -fallow-argument-mismatch && |
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+ append-fflags -fallow-argument-mismatch |
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+} |
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+ |
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+python_compile() { |
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+ # FIXME: parallel python building fails, bug #614464 |
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+ export MAKEOPTS=-j1 |
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+ |
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+ ${EPYTHON} tools/cythonize.py || die |
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+ distutils-r1_python_compile \ |
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+ ${SCIPY_FCONFIG} |
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+} |
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+ |
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+python_test() { |
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+ # fails with bdist_egg. should it be fixed in distutils-r1 eclass? |
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+ distutils_install_for_testing ${SCIPY_FCONFIG} |
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+ cd "${TEST_DIR}/lib" || die "no ${TEST_DIR} available" |
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+ PYTHONPATH=. "${EPYTHON}" -c " |
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+import scipy, sys |
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+r = scipy.test('fast', verbose=2) |
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+sys.exit(0 if r else 1)" || die "Tests fail with ${EPYTHON}" |
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+} |
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+ |
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+python_install_all() { |
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+ use doc && \ |
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+ local DOCS=( "${DISTDIR}"/${PN}-ref-${DOC_PV}.pdf ) \ |
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+ local HTML_DOCS=( "${WORKDIR}"/html/. ) |
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+ distutils-r1_python_install_all |
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+} |
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+ |
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+python_install() { |
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+ distutils-r1_python_install ${SCIPY_FCONFIG} |
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+ python_optimize |
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+} |
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+ |
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+pkg_postinst() { |
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+ elog "You might want to set the variable SCIPY_PIL_IMAGE_VIEWER" |
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+ elog "to your prefered image viewer. Example:" |
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+ elog " echo \"export SCIPY_PIL_IMAGE_VIEWER=display\" >> ~/.bashrc" |
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+} |
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