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axs 14/08/27 16:23:19 |
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|
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Modified: ChangeLog |
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Added: GBrowse-2.48-r1.ebuild |
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Removed: GBrowse-2.48.ebuild |
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Log: |
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bumped EAPI to 5 to support dev-lang/perl upgrades |
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(Portage version: 2.2.8-r1/cvs/Linux x86_64, signed Manifest commit with key 2B6559ED) |
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|
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Revision Changes Path |
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1.7 sci-biology/GBrowse/ChangeLog |
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|
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/GBrowse/ChangeLog?rev=1.7&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/GBrowse/ChangeLog?rev=1.7&content-type=text/plain |
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diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/GBrowse/ChangeLog?r1=1.6&r2=1.7 |
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Index: ChangeLog |
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=================================================================== |
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RCS file: /var/cvsroot/gentoo-x86/sci-biology/GBrowse/ChangeLog,v |
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retrieving revision 1.6 |
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retrieving revision 1.7 |
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diff -u -r1.6 -r1.7 |
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--- ChangeLog 19 Jun 2013 03:40:48 -0000 1.6 |
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+++ ChangeLog 27 Aug 2014 16:23:19 -0000 1.7 |
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@@ -1,6 +1,12 @@ |
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# ChangeLog for sci-biology/GBrowse |
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-# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2 |
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-# $Header: /var/cvsroot/gentoo-x86/sci-biology/GBrowse/ChangeLog,v 1.6 2013/06/19 03:40:48 bicatali Exp $ |
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+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2 |
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+# $Header: /var/cvsroot/gentoo-x86/sci-biology/GBrowse/ChangeLog,v 1.7 2014/08/27 16:23:19 axs Exp $ |
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+ |
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+*GBrowse-2.48-r1 (27 Aug 2014) |
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+ |
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+ 27 Aug 2014; Ian Stakenvicius (_AxS_) <axs@g.o> |
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+ +GBrowse-2.48-r1.ebuild, -GBrowse-2.48.ebuild: |
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+ bumped EAPI to 5 to support dev-lang/perl upgrades |
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|
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19 Jun 2013; Sébastien Fabbro <bicatali@g.o> metadata.xml: |
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herd is now sci-biology |
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1.1 sci-biology/GBrowse/GBrowse-2.48-r1.ebuild |
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/GBrowse/GBrowse-2.48-r1.ebuild?rev=1.1&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/GBrowse/GBrowse-2.48-r1.ebuild?rev=1.1&content-type=text/plain |
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|
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Index: GBrowse-2.48-r1.ebuild |
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=================================================================== |
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# Copyright 1999-2014 Gentoo Foundation |
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# Distributed under the terms of the GNU General Public License v2 |
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# $Header: /var/cvsroot/gentoo-x86/sci-biology/GBrowse/GBrowse-2.48-r1.ebuild,v 1.1 2014/08/27 16:23:19 axs Exp $ |
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EAPI=5 |
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MODULE_AUTHOR=LDS |
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inherit perl-module webapp |
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DESCRIPTION="Generic Model Organism Database Project - The Generic Genome Browser" |
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HOMEPAGE="http://gmod.org/wiki/GBrowse" |
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KEYWORDS="~amd64 ~x86" |
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IUSE="-minimal mysql postgres +sqlite" |
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|
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SLOT="0" |
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WEBAPP_MANUAL_SLOT="yes" |
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|
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CDEPEND="!<sci-biology/GBrowse-2.44-r1 |
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>=sci-biology/bioperl-1.6.9 |
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>=dev-perl/Bio-Graphics-2.09 |
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>=dev-perl/GD-2.07 |
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>=dev-perl/CGI-Session-4.02 |
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dev-perl/IO-String |
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dev-perl/JSON |
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dev-perl/libwww-perl |
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dev-perl/Statistics-Descriptive |
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!minimal? ( |
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dev-perl/Bio-Das |
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>=dev-perl/Bio-SamTools-1.20 |
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dev-perl/Crypt-SSLeay |
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dev-perl/DB_File-Lock |
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dev-perl/DBI |
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mysql? ( dev-perl/DBD-mysql ) |
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postgres? ( dev-perl/DBD-Pg ) |
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sqlite? ( dev-perl/DBD-SQLite ) |
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dev-perl/FCGI |
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dev-perl/File-NFSLock |
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dev-perl/GD-SVG |
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dev-perl/Net-OpenID-Consumer |
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dev-perl/Net-SMTP-SSL |
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)" |
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# >=dev-perl/Bio-DB-BigFile-1.00 - requires jklib to compile |
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DEPEND="virtual/perl-Module-Build |
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dev-perl/Capture-Tiny |
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${CDEPEND}" |
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RDEPEND="${CDEPEND}" |
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|
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PATCHES=( "${FILESDIR}"/GBrowseInstall.pm-2.39.patch ) |
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|
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src_configure() { |
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webapp_src_preinst |
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|
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# myconf="--install_base=${D}/usr" or "--install_base=/opt/gbrowse" |
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myconf="--conf=/etc/gbrowse2" |
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myconf="${myconf} --htdocs=${MY_HTDOCSDIR}" |
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myconf="${myconf} --cgibin=${MY_CGIBINDIR}" |
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myconf="${myconf} --tmp=/var/tmp/gbrowse2" |
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myconf="${myconf} --persistent=/var/db/gbrowse2" |
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myconf="${myconf} --databases=/var/db/gbrowse2/databases" |
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myconf="${myconf} --installconf=no" |
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myconf="${myconf} --installetc=no" |
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perl-module_src_configure |
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} |
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src_install() { |
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dodir /var/tmp/gbrowse2 |
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dodir /var/db/gbrowse2/sessions |
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dodir /var/db/gbrowse2/userdata |
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webapp_serverowned -R /var/tmp/gbrowse2 /var/db/gbrowse2 |
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perl-module_src_install |
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webapp_src_install |
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} |
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