[gentoo-commits] proj/sci:master commit in: dev-python/ptyprocess/, sci-electronics/player/, sci-biology/BBmap/, ... - gentoo-commits

From:	Justin Lecher <jlec@g.o>
To:	gentoo-commits@l.g.o
Subject:	[gentoo-commits] proj/sci:master commit in: dev-python/ptyprocess/, sci-electronics/player/, sci-biology/BBmap/, ...
Date:	Sun, 30 Apr 2017 10:13:15
Message-Id:	`1493547168.3199ec7737e923dc19479e5de7b31bb583071931.jlec@gentoo`

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commit:     3199ec7737e923dc19479e5de7b31bb583071931

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Author:     Justin Lecher <jlec <AT> gentoo <DOT> org>

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AuthorDate: Sun Apr 30 10:12:48 2017 +0000

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Commit:     Justin Lecher <jlec <AT> gentoo <DOT> org>

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CommitDate: Sun Apr 30 10:12:48 2017 +0000

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URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=3199ec77

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8

Cleanup remote IDs

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Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>

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12

 app-benchmarks/btl/metadata.xml                     |  2 +-

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 app-benchmarks/numbench/metadata.xml                |  2 +-

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 app-doc/root-docs/metadata.xml                      |  5 +----

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 app-vim/vim-gromacs/metadata.xml                    |  4 ++--

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 dev-cpp/eigen/metadata.xml                          |  2 +-

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 dev-cpp/icnc/metadata.xml                           |  5 +----

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 dev-java/gluegen/metadata.xml                       |  4 ++--

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 dev-java/htsjdk/metadata.xml                        |  1 -

20

 dev-java/jeuclid-core/metadata.xml                  |  4 ++--

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 dev-java/jogl/metadata.xml                          |  4 ++--

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 dev-lang/conceptual/metadata.xml                    |  2 +-

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 dev-lang/terra/metadata.xml                         |  2 +-

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 dev-libs/boost-compute/metadata.xml                 |  2 +-

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 dev-libs/libcuda/metadata.xml                       |  2 +-

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 dev-libs/libgdev/metadata.xml                       |  2 +-

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 dev-libs/utf8proc/metadata.xml                      |  4 ++--

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 dev-ml/lacaml/metadata.xml                          |  2 +-

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 dev-perl/BTLib/metadata.xml                         |  2 +-

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 dev-perl/opal-client/metadata.xml                   |  2 +-

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 dev-python/PeakUtils/metadata.xml                   |  2 +-

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 dev-python/PyVISA-py/metadata.xml                   |  4 ++--

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 dev-python/PyVISA/metadata.xml                      |  4 ++--

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 dev-python/RecSQL/metadata.xml                      |  5 +----

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 dev-python/arrayfire-python/metadata.xml            |  2 +-

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 dev-python/astropy-helpers/metadata.xml             |  3 +--

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 dev-python/astroquery/metadata.xml                  |  3 +--

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 dev-python/brewer2mpl/metadata.xml                  |  4 ++--

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 dev-python/ccdproc/metadata.xml                     |  3 +--

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 dev-python/coards/metadata.xml                      |  2 +-

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 dev-python/dijitso/metadata.xml                     |  5 ++---

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 dev-python/dimensionful/metadata.xml                |  2 +-

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 dev-python/ffc/metadata.xml                         |  3 +--

44

 dev-python/ffnet/metadata.xml                       |  1 -

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 dev-python/ffnetui/metadata.xml                     |  1 -

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 dev-python/fiat/metadata.xml                        |  3 +--

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 dev-python/gammapy/metadata.xml                     |  3 +--

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 dev-python/hdf5storage/metadata.xml                 |  4 ++--

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 dev-python/imageutils/metadata.xml                  |  3 +--

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 dev-python/instant/metadata.xml                     |  3 +--

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 dev-python/ipykernel/metadata.xml                   |  3 +--

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 dev-python/ipyparallel/metadata.xml                 |  5 +----

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 dev-python/ipython_genutils/metadata.xml            |  3 +--

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 dev-python/ipywidgets/metadata.xml                  |  2 +-

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 dev-python/jupyter_client/metadata.xml              |  5 +----

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 dev-python/jupyter_console/metadata.xml             |  5 +----

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 dev-python/jupyter_core/metadata.xml                |  5 +----

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 dev-python/matlab_wrapper/metadata.xml              |  4 ++--

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 dev-python/matplotlib-venn/metadata.xml             |  1 -

60

 dev-python/matplotlib2tikz/metadata.xml             |  3 +--

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 dev-python/matrix2latex/metadata.xml                |  4 ++--

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 dev-python/meshpy/metadata.xml                      |  4 ++--

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 dev-python/metakernel/metadata.xml                  |  4 ++--

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 dev-python/metakernel_bash/metadata.xml             |  4 ++--

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 dev-python/metakernel_python/metadata.xml           |  4 ++--

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 dev-python/nbconvert/metadata.xml                   |  5 +----

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 dev-python/nbdime/metadata.xml                      |  8 ++------

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 dev-python/nbformat/metadata.xml                    |  5 +----

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 dev-python/newrelic/metadata.xml                    |  2 +-

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 dev-python/notebook/metadata.xml                    |  2 +-

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 dev-python/nvidia-ml-py/metadata.xml                |  2 +-

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 dev-python/omniorbpy/metadata.xml                   |  2 +-

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 dev-python/opal-client/metadata.xml                 |  2 +-

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 dev-python/pamela/metadata.xml                      |  4 ++--

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 dev-python/photutils/metadata.xml                   |  3 +--

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 dev-python/pickleshare/metadata.xml                 |  3 +--

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 dev-python/prettyplotlib/metadata.xml               |  4 ++--

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 dev-python/prov/metadata.xml                        |  2 +-

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 dev-python/ptyprocess/metadata.xml                  |  2 +-

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 dev-python/pydotplus/metadata.xml                   |  2 +-

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 dev-python/pyfftw/metadata.xml                      |  2 +-

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 dev-python/pyhdf/metadata.xml                       |  2 +-

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 dev-python/pylibconfig2/metadata.xml                |  4 ++--

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 dev-python/pynomo/metadata.xml                      |  4 ++--

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 dev-python/pysolar/metadata.xml                     |  5 ++---

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 dev-python/python-ivi/metadata.xml                  |  2 +-

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 dev-python/python-vxi11/metadata.xml                |  2 +-

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 dev-python/pythoncgns/metadata.xml                  |  2 +-

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 dev-python/pythonqt/metadata.xml                    |  2 +-

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 dev-python/qtconsole/metadata.xml                   |  5 +----

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 dev-python/snakemake/metadata.xml                   |  1 -

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 dev-python/specutils/metadata.xml                   |  3 +--

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 dev-python/symengine/metadata.xml                   |  2 +-

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 dev-python/testpath/metadata.xml                    |  5 +----

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 dev-python/traitlets/metadata.xml                   |  3 +--

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 dev-python/ufl/metadata.xml                         |  3 +--

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 dev-python/viper/metadata.xml                       |  2 +-

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 dev-python/widgetsnbextension/metadata.xml          |  3 +--

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 dev-tcltk/img_rotate/metadata.xml                   |  2 +-

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 dev-tcltk/togl/metadata.xml                         |  2 +-

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 dev-tex/pythontex/metadata.xml                      |  2 +-

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 media-gfx/brlcad/metadata.xml                       |  2 +-

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 media-gfx/librecad/metadata.xml                     |  2 +-

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 media-libs/glbinding/metadata.xml                   |  2 +-

105

 sci-astronomy/libthesky/metadata.xml                |  2 +-

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 sci-astronomy/mosstack/metadata.xml                 |  2 +-

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 sci-biology/AlignGraph/metadata.xml                 |  2 +-

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 sci-biology/Atlas2/metadata.xml                     |  4 ++--

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 sci-biology/BBmap/metadata.xml                      |  2 +-

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 sci-biology/BRANCH/metadata.xml                     |  2 +-

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 sci-biology/BamView/metadata.xml                    |  2 +-

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 sci-biology/BlastToSam/metadata.xml                 |  2 +-

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 sci-biology/EBARDenovo/metadata.xml                 |  4 ++--

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 sci-biology/FLASH/metadata.xml                      |  4 ++--

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 sci-biology/HTSeq/metadata.xml                      |  2 +-

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 sci-biology/IMAGE/metadata.xml                      |  2 +-

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 sci-biology/InterMine/metadata.xml                  |  2 +-

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 sci-biology/MeV/metadata.xml                        |  4 ++--

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 sci-biology/NGSTools/metadata.xml                   |  2 +-

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 sci-biology/OBO-Edit/metadata.xml                   |  2 +-

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 sci-biology/RSeQC/metadata.xml                      |  2 +-

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 sci-biology/Ray/metadata.xml                        |  2 +-

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 sci-biology/STAR/metadata.xml                       |  2 +-

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 sci-biology/SolexaQA/metadata.xml                   |  4 ++--

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 sci-biology/TransDecoder/metadata.xml               |  3 +--

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 sci-biology/Trinotate/metadata.xml                  |  2 +-

127

 sci-biology/VarScan-bin/metadata.xml                |  1 -

128

 sci-biology/VarScan/metadata.xml                    |  2 +-

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 sci-biology/abacas/metadata.xml                     |  4 ++--

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 sci-biology/amos/metadata.xml                       |  2 +-

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 sci-biology/bambus/metadata.xml                     |  4 ++--

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 sci-biology/bamtools/metadata.xml                   |  2 +-

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 sci-biology/bcftools/metadata.xml                   |  2 +-

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 sci-biology/biobambam/metadata.xml                  |  4 ++--

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 sci-biology/biobambam2/metadata.xml                 |  6 +++---

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 sci-biology/bru2nii/metadata.xml                    |  4 ++--

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 sci-biology/bx-python/metadata.xml                  |  4 ++--

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 sci-biology/cd-hit/metadata.xml                     |  1 -

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 sci-biology/clview/metadata.xml                     |  2 +-

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 sci-biology/codonw/metadata.xml                     |  2 +-

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 sci-biology/conifer/metadata.xml                    |  2 +-

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 sci-biology/cortex_var/metadata.xml                 |  2 +-

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 sci-biology/cutadapt/metadata.xml                   |  2 +-

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 sci-biology/dipy/metadata.xml                       |  2 +-

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 sci-biology/discrover/metadata.xml                  |  2 +-

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 sci-biology/epga/metadata.xml                       |  2 +-

147

 sci-biology/estscan/metadata.xml                    |  4 ++--

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 sci-biology/exonerate-gff3/metadata.xml             |  2 +-

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 sci-biology/fastx_toolkit/metadata.xml              |  2 +-

150

 sci-biology/ffindex/metadata.xml                    |  5 +----

151

 sci-biology/flexbar/metadata.xml                    |  1 -

152

 sci-biology/freebayes/metadata.xml                  |  2 +-

153

 sci-biology/fsa/metadata.xml                        |  4 ++--

154

 sci-biology/full_lengther_next/metadata.xml         |  5 +----

155

 sci-biology/gap2caf/metadata.xml                    |  2 +-

156

 sci-biology/gatk/metadata.xml                       |  2 +-

157

 sci-biology/genomeview-bin/metadata.xml             |  4 ++--

158

 sci-biology/gffutils/metadata.xml                   |  2 +-

159

 sci-biology/glean/metadata.xml                      |  4 ++--

160

 sci-biology/igv/metadata.xml                        |  2 +-

161

 sci-biology/jtreeview/metadata.xml                  |  2 +-

162

 sci-biology/khmer/metadata.xml                      |  4 ++--

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 sci-biology/lighter/metadata.xml                    |  2 +-

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 sci-biology/lucy/metadata.xml                       |  2 +-

165

 sci-biology/manatee-igs/metadata.xml                |  2 +-

166

 sci-biology/manatee-jcvi/metadata.xml               |  4 ++--

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 sci-biology/metaseq/metadata.xml                    |  2 +-

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 sci-biology/minced/metadata.xml                     |  4 ++--

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 sci-biology/mira/metadata.xml                       |  2 +-

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 sci-biology/mne-python/metadata.xml                 |  2 +-

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 sci-biology/mrfast/metadata.xml                     |  2 +-

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 sci-biology/mrsfast/metadata.xml                    |  2 +-

173

 sci-biology/ncbi-genome-download/metadata.xml       |  6 +++---

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 sci-biology/ngsview/metadata.xml                    |  4 ++--

175

 sci-biology/nilearn/metadata.xml                    |  2 +-

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 sci-biology/nitime/metadata.xml                     |  2 +-

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 sci-biology/parafly/metadata.xml                    |  2 +-

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 sci-biology/pb-honey/metadata.xml                   |  2 +-

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 sci-biology/pb-jelly/metadata.xml                   |  2 +-

180

 sci-biology/perlprimer/metadata.xml                 |  2 +-

181

 sci-biology/picard/metadata.xml                     |  2 +-

182

 sci-biology/psychopy/metadata.xml                   |  1 -

183

 sci-biology/pybedtools/metadata.xml                 |  2 +-

184

 sci-biology/pyfaidx/metadata.xml                    |  2 +-

185

 sci-biology/pysam/metadata.xml                      |  6 +-----

186

 sci-biology/pysurfer/metadata.xml                   |  2 +-

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 sci-biology/quast/metadata.xml                      |  2 +-

188

 sci-biology/rum/metadata.xml                        |  4 ++--

189

 sci-biology/sabre/metadata.xml                      |  2 +-

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 sci-biology/sailfish/metadata.xml                   |  2 +-

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 sci-biology/salmon/metadata.xml                     |  2 +-

192

 sci-biology/samstat/metadata.xml                    |  2 +-

193

 sci-biology/samtools/metadata.xml                   |  2 +-

194

 sci-biology/scaffold_builder/metadata.xml           |  4 ++--

195

 sci-biology/scbi_blast/metadata.xml                 |  1 -

196

 sci-biology/scbi_fasta/metadata.xml                 |  1 -

197

 sci-biology/scbi_mapreduce/metadata.xml             |  1 -

198

 sci-biology/scbi_plot/metadata.xml                  |  1 -

199

 sci-biology/screed/metadata.xml                     |  4 ++--

200

 sci-biology/scythe/metadata.xml                     |  2 +-

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 sci-biology/sga/metadata.xml                        |  2 +-

202

 sci-biology/sickle/metadata.xml                     |  2 +-

203

 sci-biology/skewer-bin/metadata.xml                 |  2 +-

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 sci-biology/staden/metadata.xml                     |  2 +-

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 sci-biology/subread/metadata.xml                    |  2 +-

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 sci-biology/swissknife/metadata.xml                 |  2 +-

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 sci-biology/trinityrnaseq/metadata.xml              |  2 +-

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 sci-biology/trowel/metadata.xml                     |  4 ++--

209

 sci-biology/vcftools/metadata.xml                   |  2 +-

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 sci-biology/wgs-assembler/metadata.xml              |  2 +-

211

 sci-chemistry/GromacsWrapper/metadata.xml           |  5 +----

212

 sci-chemistry/NMRdyn/metadata.xml                   |  2 +-

213

 sci-chemistry/burrow-owl/metadata.xml               |  2 +-

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 sci-chemistry/cnsface/metadata.xml                  |  2 +-

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 sci-chemistry/mdsctk/metadata.xml                   |  2 +-

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 sci-chemistry/openbabel-java/metadata.xml           |  2 +-

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 sci-chemistry/openbabel-perl/metadata.xml           |  2 +-

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 sci-chemistry/openbabel-python/metadata.xml         |  2 +-

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 sci-chemistry/openbabel-ruby/metadata.xml           |  2 +-

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 sci-chemistry/openbabel/metadata.xml                |  2 +-

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 sci-chemistry/pesto/metadata.xml                    |  2 +-

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 sci-chemistry/pymol-plugins-psico/metadata.xml      |  2 +-

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 sci-chemistry/pyquante/metadata.xml                 |  2 +-

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 sci-chemistry/rosetta-tools/metadata.xml            |  2 +-

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 sci-electronics/minipro/metadata.xml                |  2 +-

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 sci-electronics/player/metadata.xml                 |  2 +-

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 sci-electronics/stage/metadata.xml                  |  2 +-

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 sci-electronics/tnt/metadata.xml                    |  2 +-

229

 sci-geosciences/pydap/metadata.xml                  |  4 ++--

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 sci-geosciences/pydap_handlers_cdms/metadata.xml    |  4 ++--

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 sci-geosciences/pydap_handlers_csv/metadata.xml     |  4 ++--

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 sci-geosciences/pydap_handlers_hdf5/metadata.xml    |  4 ++--

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 sci-geosciences/pydap_handlers_nca/metadata.xml     |  4 ++--

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 sci-geosciences/pydap_handlers_netcdf/metadata.xml  |  4 ++--

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 sci-geosciences/pydap_handlers_proxy/metadata.xml   |  4 ++--

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 sci-geosciences/pydap_handlers_sql/metadata.xml     |  4 ++--

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 sci-geosciences/pydap_handlers_sqlite/metadata.xml  |  4 ++--

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 sci-geosciences/pydap_responses_kml/metadata.xml    |  4 ++--

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 sci-geosciences/pydap_responses_matlab/metadata.xml |  4 ++--

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 sci-geosciences/pydap_responses_netcdf/metadata.xml |  4 ++--

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 sci-geosciences/pydap_responses_wms/metadata.xml    |  4 ++--

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 sci-geosciences/pydap_responses_xls/metadata.xml    |  4 ++--

243

 sci-libs/armadillo/metadata.xml                     |  4 ++--

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 sci-libs/asl/metadata.xml                           |  4 ++--

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 sci-libs/atlas/metadata.xml                         |  4 ++--

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 sci-libs/cgnstools/metadata.xml                     |  2 +-

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 sci-libs/clblas/metadata.xml                        |  2 +-

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 sci-libs/clfft/metadata.xml                         |  2 +-

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 sci-libs/clrng/metadata.xml                         |  2 +-

250

 sci-libs/dealii/metadata.xml                        |  2 +-

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 sci-libs/elmer-eio/metadata.xml                     |  4 ++--

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 sci-libs/elmer-hutiter/metadata.xml                 |  4 ++--

253

 sci-libs/framewave/metadata.xml                     |  2 +-

254

 sci-libs/geom/metadata.xml                          |  2 +-

255

 sci-libs/ghmm/metadata.xml                          |  2 +-

256

 sci-libs/htslib/metadata.xml                        |  2 +-

257

 sci-libs/io_lib/metadata.xml                        |  4 ++--

258

 sci-libs/itk/metadata.xml                           |  4 ++--

259

 sci-libs/k3match/metadata.xml                       |  5 +----

260

 sci-libs/lapackpp/metadata.xml                      |  6 +++---

261

 sci-libs/libcgnsoo/metadata.xml                     |  2 +-

262

 sci-libs/libmaus/metadata.xml                       |  4 ++--

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 sci-libs/libmaus2/metadata.xml                      |  4 ++--

264

 sci-libs/libsc/metadata.xml                         |  2 +-

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 sci-libs/libsufr/metadata.xml                       |  2 +-

266

 sci-libs/lwpr/metadata.xml                          |  4 ++--

267

 sci-libs/matc/metadata.xml                          |  4 ++--

268

 sci-libs/nibabel/metadata.xml                       |  2 +-

269

 sci-libs/nipy/metadata.xml                          |  4 ++--

270

 sci-libs/nipype/metadata.xml                        |  2 +-

271

 sci-libs/o2scl/metadata.xml                         |  4 ++--

272

 sci-libs/openblas/metadata.xml                      |  2 +-

273

 sci-libs/p4est/metadata.xml                         |  2 +-

274

 sci-libs/pagmo/metadata.xml                         |  2 +-

275

 sci-libs/pg2plplot/metadata.xml                     |  4 ++--

276

 sci-libs/pydicom/metadata.xml                       |  2 +-

277

 sci-libs/rdkit/metadata.xml                         |  2 +-

278

 sci-libs/scikits_image/metadata.xml                 |  9 +++------

279

 sci-libs/spglib/metadata.xml                        |  4 ++--

280

 sci-libs/starparse/metadata.xml                     |  2 +-

281

 sci-libs/symengine/metadata.xml                     |  8 ++++----

282

 sci-libs/vxl/metadata.xml                           |  2 +-

283

 sci-libs/wannier90/metadata.xml                     |  6 +++---

284

 sci-libs/xraylib/metadata.xml                       |  2 +-

285

 sci-libs/zarja/metadata.xml                         |  4 ++--

286

 sci-mathematics/acl2/metadata.xml                   |  6 +++---

287

 sci-mathematics/burrtools/metadata.xml              |  4 ++--

288

 sci-mathematics/cipi/metadata.xml                   |  4 ++--

289

 sci-mathematics/dolfin/metadata.xml                 |  2 +-

290

 sci-mathematics/gambit/metadata.xml                 |  6 +++---

291

 sci-mathematics/kayali/metadata.xml                 |  4 ++--

292

 sci-mathematics/mdp/metadata.xml                    |  2 +-

293

 sci-mathematics/netgen/metadata.xml                 |  2 +-

294

 sci-mathematics/open-axiom/metadata.xml             |  4 ++--

295

 sci-mathematics/pulp/metadata.xml                   |  2 +-

296

 sci-mathematics/ufc/metadata.xml                    |  2 +-

297

 sci-mathematics/yorick/metadata.xml                 |  4 ++--

298

 sci-misc/elmer-elmergrid/metadata.xml               |  4 ++--

299

 sci-misc/elmer-fem/metadata.xml                     |  4 ++--

300

 sci-misc/elmer-front/metadata.xml                   |  4 ++--

301

 sci-misc/elmer-meshgen2d/metadata.xml               |  4 ++--

302

 sci-misc/elmer-post/metadata.xml                    |  4 ++--

303

 sci-misc/hfst/metadata.xml                          |  2 +-

304

 sci-misc/irstlm/metadata.xml                        |  4 ++--

305

 sci-misc/jwnl/metadata.xml                          |  4 ++--

306

 sci-misc/kaldi/metadata.xml                         |  2 +-

307

 sci-misc/nltk/metadata.xml                          |  4 ++--

308

 sci-misc/opennlp-maxent/metadata.xml                |  4 ++--

309

 sci-misc/praat/metadata.xml                         |  2 +-

310

 sci-misc/pywordnet/metadata.xml                     |  4 ++--

311

 sci-misc/simx/metadata.xml                          |  2 +-

312

 sci-physics/bigdft/metadata.xml                     |  6 +++---

313

 sci-physics/clip/metadata.xml                       |  2 +-

314

 sci-physics/elk/metadata.xml                        | 10 +++++-----

315

 sci-physics/genfit/metadata.xml                     |  2 +-

316

 sci-physics/quinoa/metadata.xml                     |  5 +----

317

 sci-visualization/forge/metadata.xml                |  2 +-

318

 sci-visualization/mantid/metadata.xml               |  4 ++--

319

 sci-visualization/mayavi/metadata.xml               |  4 ++--

320

 sci-visualization/mricrogl/metadata.xml             |  2 +-

321

 sci-visualization/mricron/metadata.xml              |  2 +-

322

 sci-visualization/nodemon/metadata.xml              |  4 ++--

323

 sci-visualization/surf-ice/metadata.xml             |  2 +-

324

 sci-visualization/yt/metadata.xml                   |  2 +-

325

 sys-cluster/htcondor/metadata.xml                   |  4 ++--

326

 sys-cluster/modules/metadata.xml                    |  2 +-

327

 sys-cluster/pyslice/metadata.xml                    |  2 +-

328

 www-client/casperjs/metadata.xml                    |  2 +-

329

 x11-misc/envytools/metadata.xml                     |  2 +-

330

 318 files changed, 421 insertions(+), 513 deletions(-)

331

332

diff --git a/app-benchmarks/btl/metadata.xml b/app-benchmarks/btl/metadata.xml

333

index 1276dc69c..0e64e0503 100644

334

--- a/app-benchmarks/btl/metadata.xml

335

+++ b/app-benchmarks/btl/metadata.xml

336

@@ -1,4 +1,4 @@

337

-<?xml version="1.0" encoding="UTF-8"?>

338

+<?xml version='1.0' encoding='UTF-8'?>

339

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

340

 <pkgmetadata>

341

   <maintainer type="person">

342

343

diff --git a/app-benchmarks/numbench/metadata.xml b/app-benchmarks/numbench/metadata.xml

344

index 810ffee12..91ead3a68 100644

345

--- a/app-benchmarks/numbench/metadata.xml

346

+++ b/app-benchmarks/numbench/metadata.xml

347

@@ -1,4 +1,4 @@

348

-<?xml version="1.0" encoding="UTF-8"?>

349

+<?xml version='1.0' encoding='UTF-8'?>

350

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

351

 <pkgmetadata>

352

   <maintainer type="person">

353

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diff --git a/app-doc/root-docs/metadata.xml b/app-doc/root-docs/metadata.xml

355

index 47caabb1d..27aa72d21 100644

356

--- a/app-doc/root-docs/metadata.xml

357

+++ b/app-doc/root-docs/metadata.xml

358

@@ -1,4 +1,4 @@

359

-<?xml version="1.0" encoding="UTF-8"?>

360

+<?xml version='1.0' encoding='UTF-8'?>

361

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

362

 <pkgmetadata>

363

   <maintainer type="person">

364

@@ -19,7 +19,4 @@

365

     <flag name="math">Provide all math related documentation</flag>

366

     <flag name="metric">Default to A4 paper size and metric measurement. Letter will be used otherwise</flag>

367

   </use>

368

-  <upstream>

369

-    <remote-id type="sourceforge">tmva</remote-id>

370

-  </upstream>

371

 </pkgmetadata>

372

373

diff --git a/app-vim/vim-gromacs/metadata.xml b/app-vim/vim-gromacs/metadata.xml

374

index 704b2eb0e..4a5c9ab9d 100644

375

--- a/app-vim/vim-gromacs/metadata.xml

376

+++ b/app-vim/vim-gromacs/metadata.xml

377

@@ -1,4 +1,4 @@

378

-<?xml version="1.0" encoding="UTF-8"?>

379

+<?xml version='1.0' encoding='UTF-8'?>

380

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

381

 <pkgmetadata>

382

   <maintainer type="project">

383

@@ -7,7 +7,7 @@

384

   </maintainer>

385

   <longdescription lang="en">

386

   VIM syntax plugin which provides syntax highlighting for the gromacs files.

387

-</longdescription>

388

+  </longdescription>

389

   <upstream>

390

     <remote-id type="github">HubLot/vim-gromacs</remote-id>

391

   </upstream>

392

393

diff --git a/dev-cpp/eigen/metadata.xml b/dev-cpp/eigen/metadata.xml

394

index 6d5cb6666..cfb88d051 100644

395

--- a/dev-cpp/eigen/metadata.xml

396

+++ b/dev-cpp/eigen/metadata.xml

397

@@ -1,4 +1,4 @@

398

-<?xml version="1.0" encoding="UTF-8"?>

399

+<?xml version='1.0' encoding='UTF-8'?>

400

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

401

 <pkgmetadata>

402

   <maintainer type="project">

403

404

diff --git a/dev-cpp/icnc/metadata.xml b/dev-cpp/icnc/metadata.xml

405

index 4ab9fc666..1b36049c6 100644

406

--- a/dev-cpp/icnc/metadata.xml

407

+++ b/dev-cpp/icnc/metadata.xml

408

@@ -1,11 +1,8 @@

409

-<?xml version="1.0" encoding="UTF-8"?>

410

+<?xml version='1.0' encoding='UTF-8'?>

411

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

412

 <pkgmetadata>

413

   <maintainer type="person">

414

     <email>ottxor@g.o</email>

415

     <name>Christoph Junghans</name>

416

   </maintainer>

417

-  <upstream>

418

-    <remote-id type="github">icnc/icnc</remote-id>

419

-  </upstream>

420

 </pkgmetadata>

421

422

diff --git a/dev-java/gluegen/metadata.xml b/dev-java/gluegen/metadata.xml

423

index 9fc3e6b55..fa1706ad0 100644

424

--- a/dev-java/gluegen/metadata.xml

425

+++ b/dev-java/gluegen/metadata.xml

426

@@ -1,4 +1,4 @@

427

-<?xml version="1.0" encoding="UTF-8"?>

428

+<?xml version='1.0' encoding='UTF-8'?>

429

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

430

 <pkgmetadata>

431

   <maintainer type="project">

432

@@ -15,7 +15,7 @@ generates interfaces. It has the ability to perform significant transformations

433

 on the IR before glue code emission. GlueGen is currently powerful enough to

434

 bind even low-level APIs such as the Java Native Interface (JNI) and the AWT

435

 Native Interface (JAWT) back up to the Java programming language.

436

-</longdescription>

437

+  </longdescription>

438

   <upstream>

439

     <remote-id type="github">sgothel/gluegen</remote-id>

440

   </upstream>

441

442

diff --git a/dev-java/htsjdk/metadata.xml b/dev-java/htsjdk/metadata.xml

443

index 6c001f352..feb7e6155 100644

444

--- a/dev-java/htsjdk/metadata.xml

445

+++ b/dev-java/htsjdk/metadata.xml

446

@@ -10,7 +10,6 @@

447

 		<name>Gentoo Biology Project</name>

448

 	</maintainer>

449

 	<upstream>

450

-		<remote-id type="sourceforge">picard</remote-id>

451

 		<remote-id type="github">samtools/htsjdk</remote-id>

452

 	</upstream>

453

 </pkgmetadata>

454

455

diff --git a/dev-java/jeuclid-core/metadata.xml b/dev-java/jeuclid-core/metadata.xml

456

index 5e60bad07..5e72e0411 100644

457

--- a/dev-java/jeuclid-core/metadata.xml

458

+++ b/dev-java/jeuclid-core/metadata.xml

459

@@ -1,4 +1,4 @@

460

-<?xml version="1.0" encoding="UTF-8"?>

461

+<?xml version='1.0' encoding='UTF-8'?>

462

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

463

 <pkgmetadata>

464

   <maintainer type="project">

465

@@ -14,7 +14,7 @@

466

  * A component for Apache Cocoon

467

   This package contains the basic JEuclid rendering and document

468

   handling classes.

469

-</longdescription>

470

+  </longdescription>

471

   <upstream>

472

     <remote-id type="sourceforge">jeuclid</remote-id>

473

   </upstream>

474

475

diff --git a/dev-java/jogl/metadata.xml b/dev-java/jogl/metadata.xml

476

index 6a8c7046c..88a073443 100644

477

--- a/dev-java/jogl/metadata.xml

478

+++ b/dev-java/jogl/metadata.xml

479

@@ -1,4 +1,4 @@

480

-<?xml version="1.0" encoding="UTF-8"?>

481

+<?xml version='1.0' encoding='UTF-8'?>

482

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

483

 <pkgmetadata>

484

   <maintainer type="project">

485

@@ -8,7 +8,7 @@

486

   <longdescription lang="en">

487

 JOGL provides Java with a Binding for the OpenGL® API (JSR-231), and is designed

488

 to provide hardware-supported 3D graphics to applications written in Java.

489

-</longdescription>

490

+  </longdescription>

491

   <use>

492

     <flag name="cg">Enable NVidia Cg binding.</flag>

493

   </use>

494

495

diff --git a/dev-lang/conceptual/metadata.xml b/dev-lang/conceptual/metadata.xml

496

index bf09c654c..9766ecb5d 100644

497

--- a/dev-lang/conceptual/metadata.xml

498

+++ b/dev-lang/conceptual/metadata.xml

499

@@ -1,4 +1,4 @@

500

-<?xml version="1.0" encoding="UTF-8"?>

501

+<?xml version='1.0' encoding='UTF-8'?>

502

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

503

 <pkgmetadata>

504

   <maintainer type="person">

505

506

diff --git a/dev-lang/terra/metadata.xml b/dev-lang/terra/metadata.xml

507

index 7fa6fee0b..3b7daac27 100644

508

--- a/dev-lang/terra/metadata.xml

509

+++ b/dev-lang/terra/metadata.xml

510

@@ -1,4 +1,4 @@

511

-<?xml version="1.0" encoding="UTF-8"?>

512

+<?xml version='1.0' encoding='UTF-8'?>

513

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

514

 <pkgmetadata>

515

   <maintainer type="person">

516

517

diff --git a/dev-libs/boost-compute/metadata.xml b/dev-libs/boost-compute/metadata.xml

518

index f46139c8d..50b082f43 100644

519

--- a/dev-libs/boost-compute/metadata.xml

520

+++ b/dev-libs/boost-compute/metadata.xml

521

@@ -1,4 +1,4 @@

522

-<?xml version="1.0" encoding="UTF-8"?>

523

+<?xml version='1.0' encoding='UTF-8'?>

524

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

525

 <pkgmetadata>

526

   <maintainer type="person">

527

528

diff --git a/dev-libs/libcuda/metadata.xml b/dev-libs/libcuda/metadata.xml

529

index 1577ca222..137a77828 100644

530

--- a/dev-libs/libcuda/metadata.xml

531

+++ b/dev-libs/libcuda/metadata.xml

532

@@ -1,4 +1,4 @@

533

-<?xml version="1.0" encoding="UTF-8"?>

534

+<?xml version='1.0' encoding='UTF-8'?>

535

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

536

 <pkgmetadata>

537

   <maintainer type="person">

538

539

diff --git a/dev-libs/libgdev/metadata.xml b/dev-libs/libgdev/metadata.xml

540

index 1577ca222..137a77828 100644

541

--- a/dev-libs/libgdev/metadata.xml

542

+++ b/dev-libs/libgdev/metadata.xml

543

@@ -1,4 +1,4 @@

544

-<?xml version="1.0" encoding="UTF-8"?>

545

+<?xml version='1.0' encoding='UTF-8'?>

546

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

547

 <pkgmetadata>

548

   <maintainer type="person">

549

550

diff --git a/dev-libs/utf8proc/metadata.xml b/dev-libs/utf8proc/metadata.xml

551

index e254e530d..bea4b0d50 100644

552

--- a/dev-libs/utf8proc/metadata.xml

553

+++ b/dev-libs/utf8proc/metadata.xml

554

@@ -1,4 +1,4 @@

555

-<?xml version="1.0" encoding="UTF-8"?>

556

+<?xml version='1.0' encoding='UTF-8'?>

557

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

558

 <pkgmetadata>

559

   <maintainer type="project">

560

@@ -13,7 +13,7 @@

561

   converts for example the characters “Hyphen” (U+2010), “Minus”

562

   (U+2212) and “Hyphen-Minus” (U+002D, ASCII Minus) all into the ASCII

563

   minus sign, to make them equal for comparisons.

564

-</longdescription>

565

+  </longdescription>

566

   <upstream>

567

     <remote-id type="github">JuliaLang/utf8proc</remote-id>

568

   </upstream>

569

570

diff --git a/dev-ml/lacaml/metadata.xml b/dev-ml/lacaml/metadata.xml

571

index e5248b9ad..d11df4158 100644

572

--- a/dev-ml/lacaml/metadata.xml

573

+++ b/dev-ml/lacaml/metadata.xml

574

@@ -1,4 +1,4 @@

575

-<?xml version="1.0" encoding="UTF-8"?>

576

+<?xml version='1.0' encoding='UTF-8'?>

577

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

578

 <pkgmetadata>

579

   <maintainer type="project">

580

581

diff --git a/dev-perl/BTLib/metadata.xml b/dev-perl/BTLib/metadata.xml

582

index c928da25a..aa38b1c12 100644

583

--- a/dev-perl/BTLib/metadata.xml

584

+++ b/dev-perl/BTLib/metadata.xml

585

@@ -1,4 +1,4 @@

586

-<?xml version="1.0" encoding="UTF-8"?>

587

+<?xml version='1.0' encoding='UTF-8'?>

588

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

589

 <pkgmetadata>

590

   <maintainer type="project">

591

592

diff --git a/dev-perl/opal-client/metadata.xml b/dev-perl/opal-client/metadata.xml

593

index 5f29f0643..1cfc2883a 100644

594

--- a/dev-perl/opal-client/metadata.xml

595

+++ b/dev-perl/opal-client/metadata.xml

596

@@ -1,4 +1,4 @@

597

-<?xml version="1.0" encoding="UTF-8"?>

598

+<?xml version='1.0' encoding='UTF-8'?>

599

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

600

 <pkgmetadata>

601

   <maintainer type="project">

602

603

diff --git a/dev-python/PeakUtils/metadata.xml b/dev-python/PeakUtils/metadata.xml

604

index a4c17d458..32d3251d5 100644

605

--- a/dev-python/PeakUtils/metadata.xml

606

+++ b/dev-python/PeakUtils/metadata.xml

607

@@ -13,7 +13,7 @@

608

     increase the resolution of the peak detection.

609

   </longdescription>

610

   <upstream>

611

-    <remote-id type="pypi">PeakUtils</remote-id>

612

     <remote-id type="bitbucket">lucashnegri/peakutils</remote-id>

613

+    <remote-id type="pypi">PeakUtils</remote-id>

614

   </upstream>

615

 </pkgmetadata>

616

617

diff --git a/dev-python/PyVISA-py/metadata.xml b/dev-python/PyVISA-py/metadata.xml

618

index be11d627d..26acc9198 100644

619

--- a/dev-python/PyVISA-py/metadata.xml

620

+++ b/dev-python/PyVISA-py/metadata.xml

621

@@ -1,4 +1,4 @@

622

-<?xml version="1.0" encoding="UTF-8"?>

623

+<?xml version='1.0' encoding='UTF-8'?>

624

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

625

 <pkgmetadata>

626

   <maintainer type="person">

627

@@ -14,7 +14,7 @@

628

     Instrument Software Architecture" (VISA) in pure Python.

629

   </longdescription>

630

   <upstream>

631

-    <remote-id type="pypi">PyVISA-py</remote-id>

632

     <remote-id type="github">hgrecco/pyvisa-py</remote-id>

633

+    <remote-id type="pypi">PyVISA-py</remote-id>

634

   </upstream>

635

 </pkgmetadata>

636

637

diff --git a/dev-python/PyVISA/metadata.xml b/dev-python/PyVISA/metadata.xml

638

index c7529e22f..19e1a51ca 100644

639

--- a/dev-python/PyVISA/metadata.xml

640

+++ b/dev-python/PyVISA/metadata.xml

641

@@ -1,4 +1,4 @@

642

-<?xml version="1.0" encoding="UTF-8"?>

643

+<?xml version='1.0' encoding='UTF-8'?>

644

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

645

 <pkgmetadata>

646

   <maintainer type="person">

647

@@ -15,7 +15,7 @@

648

     test equipment via GPIB, RS232, Ethernet or USB.

649

   </longdescription>

650

   <upstream>

651

+    <remote-id type="github">hgrecco/pyvisa-py</remote-id>

652

     <remote-id type="pypi">PyVISA</remote-id>

653

-    <remote-id type="github">hgrecco/pyvisa</remote-id>

654

   </upstream>

655

 </pkgmetadata>

656

657

diff --git a/dev-python/RecSQL/metadata.xml b/dev-python/RecSQL/metadata.xml

658

index c0ad26b50..355e9a516 100644

659

--- a/dev-python/RecSQL/metadata.xml

660

+++ b/dev-python/RecSQL/metadata.xml

661

@@ -1,4 +1,4 @@

662

-<?xml version="1.0" encoding="UTF-8"?>

663

+<?xml version='1.0' encoding='UTF-8'?>

664

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

665

 <pkgmetadata>

666

   <maintainer type="person">

667

@@ -9,7 +9,4 @@

668

     <email>sci@g.o</email>

669

     <name>Gentoo Science Project</name>

670

   </maintainer>

671

-  <upstream>

672

-    <remote-id type="github">orbeckst/RecSQL</remote-id>

673

-  </upstream>

674

 </pkgmetadata>

675

676

diff --git a/dev-python/arrayfire-python/metadata.xml b/dev-python/arrayfire-python/metadata.xml

677

index 18b1016e2..12f0d0584 100644

678

--- a/dev-python/arrayfire-python/metadata.xml

679

+++ b/dev-python/arrayfire-python/metadata.xml

680

@@ -1,4 +1,4 @@

681

-<?xml version="1.0" encoding="UTF-8"?>

682

+<?xml version='1.0' encoding='UTF-8'?>

683

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

684

 <pkgmetadata>

685

   <maintainer type="person">

686

687

diff --git a/dev-python/astropy-helpers/metadata.xml b/dev-python/astropy-helpers/metadata.xml

688

index 9dffe2edc..68d40928a 100644

689

--- a/dev-python/astropy-helpers/metadata.xml

690

+++ b/dev-python/astropy-helpers/metadata.xml

691

@@ -1,4 +1,4 @@

692

-<?xml version="1.0" encoding="UTF-8"?>

693

+<?xml version='1.0' encoding='UTF-8'?>

694

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

695

 <pkgmetadata>

696

   <maintainer type="project">

697

@@ -10,7 +10,6 @@

698

 		that may be used by other projects.

699

 	</longdescription>

700

   <upstream>

701

-    <remote-id type="pypi">astropy-helpers</remote-id>

702

     <remote-id type="github">astropy/astropy-helpers</remote-id>

703

   </upstream>

704

 </pkgmetadata>

705

706

diff --git a/dev-python/astroquery/metadata.xml b/dev-python/astroquery/metadata.xml

707

index 224276aae..84e169547 100644

708

--- a/dev-python/astroquery/metadata.xml

709

+++ b/dev-python/astroquery/metadata.xml

710

@@ -1,4 +1,4 @@

711

-<?xml version="1.0" encoding="UTF-8"?>

712

+<?xml version='1.0' encoding='UTF-8'?>

713

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

714

 <pkgmetadata>

715

   <maintainer type="project">

716

@@ -11,7 +11,6 @@

717

 		to support many services with a uniform API.

718

 	</longdescription>

719

   <upstream>

720

-    <remote-id type="pypi">astroquery</remote-id>

721

     <remote-id type="github">astropy/astroquery</remote-id>

722

   </upstream>

723

 </pkgmetadata>

724

725

diff --git a/dev-python/brewer2mpl/metadata.xml b/dev-python/brewer2mpl/metadata.xml

726

index 4f2cd15bf..42211a68b 100644

727

--- a/dev-python/brewer2mpl/metadata.xml

728

+++ b/dev-python/brewer2mpl/metadata.xml

729

@@ -1,4 +1,4 @@

730

-<?xml version="1.0" encoding="UTF-8"?>

731

+<?xml version='1.0' encoding='UTF-8'?>

732

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

733

 <pkgmetadata>

734

   <maintainer type="person">

735

@@ -16,7 +16,7 @@

736

     ships with brewer2mpl so no internet connection is required.

737

   </longdescription>

738

   <upstream>

739

-    <remote-id type="pypi">brewer2mpl</remote-id>

740

     <remote-id type="github">jiffyclub/brewer2mpl</remote-id>

741

+    <remote-id type="pypi">brewer2mpl</remote-id>

742

   </upstream>

743

 </pkgmetadata>

744

745

diff --git a/dev-python/ccdproc/metadata.xml b/dev-python/ccdproc/metadata.xml

746

index a254a5734..e634ec8d8 100644

747

--- a/dev-python/ccdproc/metadata.xml

748

+++ b/dev-python/ccdproc/metadata.xml

749

@@ -1,4 +1,4 @@

750

-<?xml version="1.0" encoding="UTF-8"?>

751

+<?xml version='1.0' encoding='UTF-8'?>

752

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

753

 <pkgmetadata>

754

   <maintainer type="project">

755

@@ -11,7 +11,6 @@

756

 		and bad pixel tracking through the reduction steps.

757

 	</longdescription>

758

   <upstream>

759

-    <remote-id type="pypi">ccdproc</remote-id>

760

     <remote-id type="github">astropy/ccdproc</remote-id>

761

   </upstream>

762

 </pkgmetadata>

763

764

diff --git a/dev-python/coards/metadata.xml b/dev-python/coards/metadata.xml

765

index 34578d15d..77d8a36e7 100644

766

--- a/dev-python/coards/metadata.xml

767

+++ b/dev-python/coards/metadata.xml

768

@@ -1,4 +1,4 @@

769

-<?xml version="1.0" encoding="UTF-8"?>

770

+<?xml version='1.0' encoding='UTF-8'?>

771

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

772

 <pkgmetadata>

773

   <maintainer type="person">

774

775

diff --git a/dev-python/dijitso/metadata.xml b/dev-python/dijitso/metadata.xml

776

index 489293405..cb17acf08 100644

777

--- a/dev-python/dijitso/metadata.xml

778

+++ b/dev-python/dijitso/metadata.xml

779

@@ -1,4 +1,4 @@

780

-<?xml version="1.0" encoding="UTF-8"?>

781

+<?xml version='1.0' encoding='UTF-8'?>

782

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

783

 <pkgmetadata>

784

 	<maintainer type="project">

785

@@ -12,7 +12,6 @@

786

 		library, and thus do not need wrapping in a nice Python interface.

787

 	</longdescription>

788

 	<upstream>

789

-		<remote-id type="bitbucket">fenics-project/ffc</remote-id>

790

-		<remote-id type="launchpad">ffc</remote-id>

791

+		<remote-id type="bitbucket">fenics-project/dijitso</remote-id>

792

 	</upstream>

793

 </pkgmetadata>

794

795

diff --git a/dev-python/dimensionful/metadata.xml b/dev-python/dimensionful/metadata.xml

796

index 310bd052e..c156f9144 100644

797

--- a/dev-python/dimensionful/metadata.xml

798

+++ b/dev-python/dimensionful/metadata.xml

799

@@ -1,4 +1,4 @@

800

-<?xml version="1.0" encoding="UTF-8"?>

801

+<?xml version='1.0' encoding='UTF-8'?>

802

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

803

 <pkgmetadata>

804

   <maintainer type="person">

805

806

diff --git a/dev-python/ffc/metadata.xml b/dev-python/ffc/metadata.xml

807

index c18ab8720..35bb1f59e 100644

808

--- a/dev-python/ffc/metadata.xml

809

+++ b/dev-python/ffc/metadata.xml

810

@@ -1,4 +1,4 @@

811

-<?xml version="1.0" encoding="UTF-8"?>

812

+<?xml version='1.0' encoding='UTF-8'?>

813

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

814

 <pkgmetadata>

815

 	<maintainer type="project">

816

@@ -15,6 +15,5 @@

817

 	</longdescription>

818

 	<upstream>

819

 		<remote-id type="bitbucket">fenics-project/ffc</remote-id>

820

-		<remote-id type="launchpad">ffc</remote-id>

821

 	</upstream>

822

 </pkgmetadata>

823

824

diff --git a/dev-python/ffnet/metadata.xml b/dev-python/ffnet/metadata.xml

825

index 81dcc789e..84e07f038 100644

826

--- a/dev-python/ffnet/metadata.xml

827

+++ b/dev-python/ffnet/metadata.xml

828

@@ -13,7 +13,6 @@

829

     <flag name="matplotlib">Use matplotlib for drawing</flag>

830

   </use>

831

   <upstream>

832

-    <remote-id type="github">mrkwjc/ffnet</remote-id>

833

     <remote-id type="pypi">ffnet</remote-id>

834

     <remote-id type="sourceforge">ffnet</remote-id>

835

   </upstream>

836

837

diff --git a/dev-python/ffnetui/metadata.xml b/dev-python/ffnetui/metadata.xml

838

index 50cd8d0c5..fe996f826 100644

839

--- a/dev-python/ffnetui/metadata.xml

840

+++ b/dev-python/ffnetui/metadata.xml

841

@@ -9,7 +9,6 @@

842

   GUI for ffnet - feed forward neural network for python

843

   </longdescription>

844

   <upstream>

845

-    <remote-id type="github">mrkwjc/ffnetui</remote-id>

846

     <remote-id type="pypi">ffnetui</remote-id>

847

     <remote-id type="sourceforge">ffnet</remote-id>

848

   </upstream>

849

850

diff --git a/dev-python/fiat/metadata.xml b/dev-python/fiat/metadata.xml

851

index c28ae4e03..c3aad9140 100644

852

--- a/dev-python/fiat/metadata.xml

853

+++ b/dev-python/fiat/metadata.xml

854

@@ -1,4 +1,4 @@

855

-<?xml version="1.0" encoding="UTF-8"?>

856

+<?xml version='1.0' encoding='UTF-8'?>

857

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

858

 <pkgmetadata>

859

 	<maintainer type="project">

860

@@ -17,6 +17,5 @@

861

 	</longdescription>

862

 	<upstream>

863

 		<remote-id type="bitbucket">fenics-project/fiat</remote-id>

864

-		<remote-id type="launchpad">fiat</remote-id>

865

 	</upstream>

866

 </pkgmetadata>

867

868

diff --git a/dev-python/gammapy/metadata.xml b/dev-python/gammapy/metadata.xml

869

index 413f49bd4..9ab0a8d12 100644

870

--- a/dev-python/gammapy/metadata.xml

871

+++ b/dev-python/gammapy/metadata.xml

872

@@ -1,4 +1,4 @@

873

-<?xml version="1.0" encoding="UTF-8"?>

874

+<?xml version='1.0' encoding='UTF-8'?>

875

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

876

 <pkgmetadata>

877

   <maintainer type="project">

878

@@ -11,7 +11,6 @@

879

 		H.E.S.S, and CTA in primarily Galactic plane survey studies.

880

 	</longdescription>

881

   <upstream>

882

-    <remote-id type="pypi">gammapy</remote-id>

883

     <remote-id type="github">gammapy/gammapy</remote-id>

884

   </upstream>

885

 </pkgmetadata>

886

887

diff --git a/dev-python/hdf5storage/metadata.xml b/dev-python/hdf5storage/metadata.xml

888

index 320a9f946..8ce73fe8c 100644

889

--- a/dev-python/hdf5storage/metadata.xml

890

+++ b/dev-python/hdf5storage/metadata.xml

891

@@ -1,4 +1,4 @@

892

-<?xml version="1.0" encoding="UTF-8"?>

893

+<?xml version='1.0' encoding='UTF-8'?>

894

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

895

 <pkgmetadata>

896

   <maintainer type="person">

897

@@ -17,7 +17,7 @@

898

     extension and some extra meta-data.

899

   </longdescription>

900

   <upstream>

901

-    <remote-id type="pypi">hdf5storage</remote-id>

902

     <remote-id type="github">frejanordsiek/hdf5storage</remote-id>

903

+    <remote-id type="pypi">hdf5storage</remote-id>

904

   </upstream>

905

 </pkgmetadata>

906

907

diff --git a/dev-python/imageutils/metadata.xml b/dev-python/imageutils/metadata.xml

908

index 90af04221..8f422b20a 100644

909

--- a/dev-python/imageutils/metadata.xml

910

+++ b/dev-python/imageutils/metadata.xml

911

@@ -1,4 +1,4 @@

912

-<?xml version="1.0" encoding="UTF-8"?>

913

+<?xml version='1.0' encoding='UTF-8'?>

914

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

915

 <pkgmetadata>

916

   <maintainer type="project">

917

@@ -11,7 +11,6 @@

918

 		package before the 1.0 release.

919

 	</longdescription>

920

   <upstream>

921

-    <remote-id type="pypi">imageutils</remote-id>

922

     <remote-id type="github">astropy/imageutils</remote-id>

923

   </upstream>

924

 </pkgmetadata>

925

926

diff --git a/dev-python/instant/metadata.xml b/dev-python/instant/metadata.xml

927

index b3c7ae99c..0aa8827a4 100644

928

--- a/dev-python/instant/metadata.xml

929

+++ b/dev-python/instant/metadata.xml

930

@@ -1,4 +1,4 @@

931

-<?xml version="1.0" encoding="UTF-8"?>

932

+<?xml version='1.0' encoding='UTF-8'?>

933

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

934

 <pkgmetadata>

935

 	<maintainer type="project">

936

@@ -12,6 +12,5 @@

937

 	</longdescription>

938

 	<upstream>

939

 		<remote-id type="bitbucket">fenics-project/instant</remote-id>

940

-		<remote-id type="launchpad">instant</remote-id>

941

 	</upstream>

942

 </pkgmetadata>

943

944

diff --git a/dev-python/ipykernel/metadata.xml b/dev-python/ipykernel/metadata.xml

945

index 973783bf3..d87bc07db 100644

946

--- a/dev-python/ipykernel/metadata.xml

947

+++ b/dev-python/ipykernel/metadata.xml

948

@@ -1,4 +1,4 @@

949

-<?xml version="1.0" encoding="UTF-8"?>

950

+<?xml version='1.0' encoding='UTF-8'?>

951

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

952

 <pkgmetadata>

953

   <maintainer type="project">

954

@@ -9,7 +9,6 @@

955

     This package provides the IPython kernel for Jupyter.

956

   </longdescription>

957

   <upstream>

958

-    <remote-id type="pypi">ipykernel</remote-id>

959

     <remote-id type="github">ipython/ipykernel</remote-id>

960

   </upstream>

961

 </pkgmetadata>

962

963

diff --git a/dev-python/ipyparallel/metadata.xml b/dev-python/ipyparallel/metadata.xml

964

index 47348926e..bd6c5c2e0 100644

965

--- a/dev-python/ipyparallel/metadata.xml

966

+++ b/dev-python/ipyparallel/metadata.xml

967

@@ -1,4 +1,4 @@

968

-<?xml version="1.0" encoding="UTF-8"?>

969

+<?xml version='1.0' encoding='UTF-8'?>

970

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

971

 <pkgmetadata>

972

   <maintainer type="project">

973

@@ -9,7 +9,4 @@

974

   	Interactive Parallel Computing with IPython.

975

     ipyparallel is the new home of IPython.parallel.

976

   </longdescription>

977

-  <upstream>

978

-    <remote-id type="pypi">ipyparallel</remote-id>

979

-  </upstream>

980

 </pkgmetadata>

981

982

diff --git a/dev-python/ipython_genutils/metadata.xml b/dev-python/ipython_genutils/metadata.xml

983

index c9deb0b09..52164c08d 100644

984

--- a/dev-python/ipython_genutils/metadata.xml

985

+++ b/dev-python/ipython_genutils/metadata.xml

986

@@ -1,4 +1,4 @@

987

-<?xml version="1.0" encoding="UTF-8"?>

988

+<?xml version='1.0' encoding='UTF-8'?>

989

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

990

 <pkgmetadata>

991

   <maintainer type="project">

992

@@ -12,7 +12,6 @@

993

     go away. No packages outside IPython/Jupyter should depend on it.

994

   </longdescription>

995

   <upstream>

996

-    <remote-id type="pypi">ipython_genutils</remote-id>

997

     <remote-id type="github">ipython/ipython_genutils</remote-id>

998

   </upstream>

999

 </pkgmetadata>

1000

1001

diff --git a/dev-python/ipywidgets/metadata.xml b/dev-python/ipywidgets/metadata.xml

1002

index 8bc51992f..4495ebb74 100644

1003

--- a/dev-python/ipywidgets/metadata.xml

1004

+++ b/dev-python/ipywidgets/metadata.xml

1005

@@ -1,4 +1,4 @@

1006

-<?xml version="1.0" encoding="UTF-8"?>

1007

+<?xml version='1.0' encoding='UTF-8'?>

1008

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1009

 <pkgmetadata>

1010

   <maintainer type="project">

1011

1012

diff --git a/dev-python/jupyter_client/metadata.xml b/dev-python/jupyter_client/metadata.xml

1013

index 53a086c17..fbd1af5b5 100644

1014

--- a/dev-python/jupyter_client/metadata.xml

1015

+++ b/dev-python/jupyter_client/metadata.xml

1016

@@ -1,4 +1,4 @@

1017

-<?xml version="1.0" encoding="UTF-8"?>

1018

+<?xml version='1.0' encoding='UTF-8'?>

1019

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1020

 <pkgmetadata>

1021

   <maintainer type="project">

1022

@@ -11,7 +11,4 @@

1023

     kernels. It also provides the jupyter kernelspec entrypoint for

1024

     installing kernelspecs for use with Jupyter frontends.

1025

   </longdescription>

1026

-  <upstream>

1027

-    <remote-id type="pypi">jupyter_client</remote-id>

1028

-  </upstream>

1029

 </pkgmetadata>

1030

1031

diff --git a/dev-python/jupyter_console/metadata.xml b/dev-python/jupyter_console/metadata.xml

1032

index 6fc0fef28..a2b19aeaf 100644

1033

--- a/dev-python/jupyter_console/metadata.xml

1034

+++ b/dev-python/jupyter_console/metadata.xml

1035

@@ -1,4 +1,4 @@

1036

-<?xml version="1.0" encoding="UTF-8"?>

1037

+<?xml version='1.0' encoding='UTF-8'?>

1038

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1039

 <pkgmetadata>

1040

   <maintainer type="project">

1041

@@ -9,7 +9,4 @@

1042

     A terminal-based console frontend for Jupyter kernels.

1043

     This code is based on the single-process IPython terminal.

1044

   </longdescription>

1045

-  <upstream>

1046

-    <remote-id type="pypi">jupyter_console</remote-id>

1047

-  </upstream>

1048

 </pkgmetadata>

1049

1050

diff --git a/dev-python/jupyter_core/metadata.xml b/dev-python/jupyter_core/metadata.xml

1051

index 467bb37a5..88e71aa2c 100644

1052

--- a/dev-python/jupyter_core/metadata.xml

1053

+++ b/dev-python/jupyter_core/metadata.xml

1054

@@ -1,4 +1,4 @@

1055

-<?xml version="1.0" encoding="UTF-8"?>

1056

+<?xml version='1.0' encoding='UTF-8'?>

1057

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1058

 <pkgmetadata>

1059

   <maintainer type="project">

1060

@@ -10,7 +10,4 @@

1061

     This package contains base application classes and configuration

1062

     inhertited by other projects. It doesn't do much on its own.

1063

   </longdescription>

1064

-  <upstream>

1065

-    <remote-id type="pypi">jupyter_core</remote-id>

1066

-  </upstream>

1067

 </pkgmetadata>

1068

1069

diff --git a/dev-python/matlab_wrapper/metadata.xml b/dev-python/matlab_wrapper/metadata.xml

1070

index bad1f381d..38df0353a 100644

1071

--- a/dev-python/matlab_wrapper/metadata.xml

1072

+++ b/dev-python/matlab_wrapper/metadata.xml

1073

@@ -1,4 +1,4 @@

1074

-<?xml version="1.0" encoding="UTF-8"?>

1075

+<?xml version='1.0' encoding='UTF-8'?>

1076

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1077

 <pkgmetadata>

1078

   <maintainer type="person">

1079

@@ -17,7 +17,7 @@

1080

     as a regular Python module.

1081

   </longdescription>

1082

   <upstream>

1083

-    <remote-id type="pypi">matlab_wrapper</remote-id>

1084

     <remote-id type="github">mrkrd/matlab_wrapper</remote-id>

1085

+    <remote-id type="pypi">matlab_wrapper</remote-id>

1086

   </upstream>

1087

 </pkgmetadata>

1088

1089

diff --git a/dev-python/matplotlib-venn/metadata.xml b/dev-python/matplotlib-venn/metadata.xml

1090

index 8401ce8b5..cae4c83f9 100644

1091

--- a/dev-python/matplotlib-venn/metadata.xml

1092

+++ b/dev-python/matplotlib-venn/metadata.xml

1093

@@ -6,7 +6,6 @@

1094

     <name>Gentoo Science Project</name>

1095

   </maintainer>

1096

   <upstream>

1097

-    <remote-id type="github">matplotlib-venn</remote-id>

1098

     <remote-id type="pypi">matplotlib-venn</remote-id>

1099

   </upstream>

1100

 </pkgmetadata>

1101

1102

diff --git a/dev-python/matplotlib2tikz/metadata.xml b/dev-python/matplotlib2tikz/metadata.xml

1103

index 9c08eac01..9dc28cbe0 100644

1104

--- a/dev-python/matplotlib2tikz/metadata.xml

1105

+++ b/dev-python/matplotlib2tikz/metadata.xml

1106

@@ -1,4 +1,4 @@

1107

-<?xml version="1.0" encoding="UTF-8"?>

1108

+<?xml version='1.0' encoding='UTF-8'?>

1109

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1110

 <pkgmetadata>

1111

 	<maintainer type="person">

1112

@@ -12,6 +12,5 @@

1113

 	<longdescription>matplotlib2tikz is a Python tool for converting matplotlib figures into PGFPlots (TikZ) figures like for native inclusion into LaTeX documents. The output of matplotlib2tikz is in PGFPlots, a LaTeX library that sits on top of TikZ and describes graphs in terms of axes, data etc. Consequently, the output of matplotlib2tikz retains more information, can be more easily understood, and is more easily editable than raw TikZ output.</longdescription>

1114

 	<upstream>

1115

 		<remote-id type="github">nschloe/matplotlib2tikz</remote-id>

1116

-		<remote-id type="pypi">matplotlib2tikz</remote-id>

1117

 	</upstream>

1118

 </pkgmetadata>

1119

1120

diff --git a/dev-python/matrix2latex/metadata.xml b/dev-python/matrix2latex/metadata.xml

1121

index b8ecd8dc9..e8cce6c4b 100644

1122

--- a/dev-python/matrix2latex/metadata.xml

1123

+++ b/dev-python/matrix2latex/metadata.xml

1124

@@ -1,4 +1,4 @@

1125

-<?xml version="1.0" encoding="UTF-8"?>

1126

+<?xml version='1.0' encoding='UTF-8'?>

1127

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1128

 <pkgmetadata>

1129

 	<maintainer type="project">

1130

@@ -11,6 +11,6 @@

1131

 		LATeX documents and compile them.

1132

 	</longdescription>

1133

 	<upstream>

1134

-		<remote-id type="github">matrix2latex</remote-id>

1135

+		<remote-id type="github">TheChymera/matrix2latex</remote-id>

1136

 	</upstream>

1137

 </pkgmetadata>

1138

1139

diff --git a/dev-python/meshpy/metadata.xml b/dev-python/meshpy/metadata.xml

1140

index d5be6ad0b..18f3e3730 100644

1141

--- a/dev-python/meshpy/metadata.xml

1142

+++ b/dev-python/meshpy/metadata.xml

1143

@@ -1,4 +1,4 @@

1144

-<?xml version="1.0" encoding="UTF-8"?>

1145

+<?xml version='1.0' encoding='UTF-8'?>

1146

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1147

 <pkgmetadata>

1148

   <maintainer type="project">

1149

@@ -12,7 +12,7 @@ also have many other applications ranging from computer graphics to robotics.

1150

 In order to generate these 2D and 3D meshes, MeshPy provides Python interfaces 

1151

 to two well-regarded mesh generators, Triangle by J. Shewchuk and TetGen by 

1152

 Hang Si. Both are included in the package in slightly modified versions.

1153

-</longdescription>

1154

+  </longdescription>

1155

   <upstream>

1156

     <remote-id type="pypi">MeshPy</remote-id>

1157

   </upstream>

1158

1159

diff --git a/dev-python/metakernel/metadata.xml b/dev-python/metakernel/metadata.xml

1160

index 98f5e4874..e0c68c929 100644

1161

--- a/dev-python/metakernel/metadata.xml

1162

+++ b/dev-python/metakernel/metadata.xml

1163

@@ -1,4 +1,4 @@

1164

-<?xml version="1.0" encoding="UTF-8"?>

1165

+<?xml version='1.0' encoding='UTF-8'?>

1166

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1167

 <pkgmetadata>

1168

   <maintainer type="project">

1169

@@ -11,7 +11,7 @@

1170

     parallel and distributed processing, downloads, and much more).

1171

   </longdescription>

1172

   <upstream>

1173

-    <remote-id type="pypi">metakernel</remote-id>

1174

     <remote-id type="github">Calysto/metakernel</remote-id>

1175

+    <remote-id type="pypi">metakernel</remote-id>

1176

   </upstream>

1177

 </pkgmetadata>

1178

1179

diff --git a/dev-python/metakernel_bash/metadata.xml b/dev-python/metakernel_bash/metadata.xml

1180

index 105ab469f..286d590e3 100644

1181

--- a/dev-python/metakernel_bash/metadata.xml

1182

+++ b/dev-python/metakernel_bash/metadata.xml

1183

@@ -1,4 +1,4 @@

1184

-<?xml version="1.0" encoding="UTF-8"?>

1185

+<?xml version='1.0' encoding='UTF-8'?>

1186

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1187

 <pkgmetadata>

1188

   <maintainer type="project">

1189

@@ -9,7 +9,7 @@

1190

     A Bash kernel for Jupyter/IPython, based on MetaKernel.

1191

   </longdescription>

1192

   <upstream>

1193

-    <remote-id type="pypi">metakernel_bash</remote-id>

1194

     <remote-id type="github">Calysto/metakernel</remote-id>

1195

+    <remote-id type="pypi">metakernel_bash</remote-id>

1196

   </upstream>

1197

 </pkgmetadata>

1198

1199

diff --git a/dev-python/metakernel_python/metadata.xml b/dev-python/metakernel_python/metadata.xml

1200

index 2aed17634..aaf6cb9d7 100644

1201

--- a/dev-python/metakernel_python/metadata.xml

1202

+++ b/dev-python/metakernel_python/metadata.xml

1203

@@ -1,4 +1,4 @@

1204

-<?xml version="1.0" encoding="UTF-8"?>

1205

+<?xml version='1.0' encoding='UTF-8'?>

1206

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1207

 <pkgmetadata>

1208

   <maintainer type="project">

1209

@@ -9,7 +9,7 @@

1210

     A Python kernel for Jupyter/IPython, based on MetaKernel.

1211

   </longdescription>

1212

   <upstream>

1213

-    <remote-id type="pypi">metakernel_python</remote-id>

1214

     <remote-id type="github">Calysto/metakernel</remote-id>

1215

+    <remote-id type="pypi">metakernel_python</remote-id>

1216

   </upstream>

1217

 </pkgmetadata>

1218

1219

diff --git a/dev-python/nbconvert/metadata.xml b/dev-python/nbconvert/metadata.xml

1220

index 10cd4105e..d9cbf5baa 100644

1221

--- a/dev-python/nbconvert/metadata.xml

1222

+++ b/dev-python/nbconvert/metadata.xml

1223

@@ -1,4 +1,4 @@

1224

-<?xml version="1.0" encoding="UTF-8"?>

1225

+<?xml version='1.0' encoding='UTF-8'?>

1226

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1227

 <pkgmetadata>

1228

   <maintainer type="project">

1229

@@ -9,7 +9,4 @@

1230

     Jupyter NBConvert converts Jupyter notebooks to various other

1231

     formats via Jinja templates.

1232

   </longdescription>

1233

-  <upstream>

1234

-    <remote-id type="pypi">nbconvert</remote-id>

1235

-  </upstream>

1236

 </pkgmetadata>

1237

1238

diff --git a/dev-python/nbdime/metadata.xml b/dev-python/nbdime/metadata.xml

1239

index b2a229dc3..5a8712352 100644

1240

--- a/dev-python/nbdime/metadata.xml

1241

+++ b/dev-python/nbdime/metadata.xml

1242

@@ -1,4 +1,4 @@

1243

-<?xml version="1.0" encoding="UTF-8"?>

1244

+<?xml version='1.0' encoding='UTF-8'?>

1245

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1246

 <pkgmetadata>

1247

   <maintainer type="person">

1248

@@ -12,13 +12,9 @@

1249

   <longdescription>

1250

     nbdime provides tools for diffing and merging of Jupyter Notebooks.

1251

   </longdescription>

1252

-  <upstream>

1253

-    <remote-id type="github">jupyter/nbdime</remote-id>

1254

-    <remote-id type="pypi">nbdime</remote-id>

1255

-  </upstream>

1256

   <use>

1257

     <flag name="webtools">

1258

       Install web-based diff and merge tools.

1259

     </flag>

1260

-</use>

1261

+  </use>

1262

 </pkgmetadata>

1263

1264

diff --git a/dev-python/nbformat/metadata.xml b/dev-python/nbformat/metadata.xml

1265

index 6bd91dea5..4788ba53f 100644

1266

--- a/dev-python/nbformat/metadata.xml

1267

+++ b/dev-python/nbformat/metadata.xml

1268

@@ -1,4 +1,4 @@

1269

-<?xml version="1.0" encoding="UTF-8"?>

1270

+<?xml version='1.0' encoding='UTF-8'?>

1271

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1272

 <pkgmetadata>

1273

   <maintainer type="project">

1274

@@ -11,7 +11,4 @@

1275

     notebooks. There is also a JSON schema for notebook format

1276

     versions &gt;= 3.

1277

   </longdescription>

1278

-  <upstream>

1279

-    <remote-id type="pypi">nbformat</remote-id>

1280

-  </upstream>

1281

 </pkgmetadata>

1282

1283

diff --git a/dev-python/newrelic/metadata.xml b/dev-python/newrelic/metadata.xml

1284

index 442e04047..4a7c9adc5 100644

1285

--- a/dev-python/newrelic/metadata.xml

1286

+++ b/dev-python/newrelic/metadata.xml

1287

@@ -1,4 +1,4 @@

1288

-<?xml version="1.0" encoding="UTF-8"?>

1289

+<?xml version='1.0' encoding='UTF-8'?>

1290

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1291

 <pkgmetadata>

1292

   <maintainer type="project">

1293

1294

diff --git a/dev-python/notebook/metadata.xml b/dev-python/notebook/metadata.xml

1295

index 2751ca0be..8161170dc 100644

1296

--- a/dev-python/notebook/metadata.xml

1297

+++ b/dev-python/notebook/metadata.xml

1298

@@ -1,4 +1,4 @@

1299

-<?xml version="1.0" encoding="UTF-8"?>

1300

+<?xml version='1.0' encoding='UTF-8'?>

1301

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1302

 <pkgmetadata>

1303

   <maintainer type="project">

1304

1305

diff --git a/dev-python/nvidia-ml-py/metadata.xml b/dev-python/nvidia-ml-py/metadata.xml

1306

index 5e6d9d85c..e18e888d9 100644

1307

--- a/dev-python/nvidia-ml-py/metadata.xml

1308

+++ b/dev-python/nvidia-ml-py/metadata.xml

1309

@@ -1,4 +1,4 @@

1310

-<?xml version="1.0" encoding="UTF-8"?>

1311

+<?xml version='1.0' encoding='UTF-8'?>

1312

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1313

 <pkgmetadata>

1314

   <maintainer type="person">

1315

1316

diff --git a/dev-python/omniorbpy/metadata.xml b/dev-python/omniorbpy/metadata.xml

1317

index f3506b413..d47182280 100644

1318

--- a/dev-python/omniorbpy/metadata.xml

1319

+++ b/dev-python/omniorbpy/metadata.xml

1320

@@ -1,4 +1,4 @@

1321

-<?xml version="1.0" encoding="UTF-8"?>

1322

+<?xml version='1.0' encoding='UTF-8'?>

1323

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1324

 <pkgmetadata>

1325

   <maintainer type="project">

1326

1327

diff --git a/dev-python/opal-client/metadata.xml b/dev-python/opal-client/metadata.xml

1328

index 28e2fc558..7aac60648 100644

1329

--- a/dev-python/opal-client/metadata.xml

1330

+++ b/dev-python/opal-client/metadata.xml

1331

@@ -1,4 +1,4 @@

1332

-<?xml version="1.0" encoding="UTF-8"?>

1333

+<?xml version='1.0' encoding='UTF-8'?>

1334

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1335

 <pkgmetadata>

1336

   <maintainer type="project">

1337

1338

diff --git a/dev-python/pamela/metadata.xml b/dev-python/pamela/metadata.xml

1339

index d1dc0c28b..e55257c75 100644

1340

--- a/dev-python/pamela/metadata.xml

1341

+++ b/dev-python/pamela/metadata.xml

1342

@@ -1,4 +1,4 @@

1343

-<?xml version="1.0" encoding="UTF-8"?>

1344

+<?xml version='1.0' encoding='UTF-8'?>

1345

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1346

 <pkgmetadata>

1347

   <maintainer type="project">

1348

@@ -10,7 +10,7 @@

1349

     written in pure Python (using ctypes).

1350

   </longdescription>

1351

   <upstream>

1352

-    <remote-id type="pypi">pamela</remote-id>

1353

     <remote-id type="github">minrk/pamela</remote-id>

1354

+    <remote-id type="pypi">pamela</remote-id>

1355

   </upstream>

1356

 </pkgmetadata>

1357

1358

diff --git a/dev-python/photutils/metadata.xml b/dev-python/photutils/metadata.xml

1359

index b5ab4d774..00ee2183b 100644

1360

--- a/dev-python/photutils/metadata.xml

1361

+++ b/dev-python/photutils/metadata.xml

1362

@@ -1,4 +1,4 @@

1363

-<?xml version="1.0" encoding="UTF-8"?>

1364

+<?xml version='1.0' encoding='UTF-8'?>

1365

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1366

 <pkgmetadata>

1367

   <maintainer type="project">

1368

@@ -11,7 +11,6 @@

1369

 		centroid and shape parameters, and performing photometry.

1370

 	</longdescription>

1371

   <upstream>

1372

-    <remote-id type="pypi">photutils</remote-id>

1373

     <remote-id type="github">astropy/photutils</remote-id>

1374

   </upstream>

1375

 </pkgmetadata>

1376

1377

diff --git a/dev-python/pickleshare/metadata.xml b/dev-python/pickleshare/metadata.xml

1378

index 5d8abb4a3..967d08889 100644

1379

--- a/dev-python/pickleshare/metadata.xml

1380

+++ b/dev-python/pickleshare/metadata.xml

1381

@@ -1,4 +1,4 @@

1382

-<?xml version="1.0" encoding="UTF-8"?>

1383

+<?xml version='1.0' encoding='UTF-8'?>

1384

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1385

 <pkgmetadata>

1386

   <maintainer type="project">

1387

@@ -15,7 +15,6 @@

1388

     governed by PickleShare.

1389

   </longdescription>

1390

   <upstream>

1391

-    <remote-id type="pypi">pickleshare</remote-id>

1392

     <remote-id type="github">pickleshare/pickleshare</remote-id>

1393

   </upstream>

1394

 </pkgmetadata>

1395

1396

diff --git a/dev-python/prettyplotlib/metadata.xml b/dev-python/prettyplotlib/metadata.xml

1397

index 752a7a1ad..615f1b6db 100644

1398

--- a/dev-python/prettyplotlib/metadata.xml

1399

+++ b/dev-python/prettyplotlib/metadata.xml

1400

@@ -1,4 +1,4 @@

1401

-<?xml version="1.0" encoding="UTF-8"?>

1402

+<?xml version='1.0' encoding='UTF-8'?>

1403

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1404

 <pkgmetadata>

1405

   <maintainer type="person">

1406

@@ -7,7 +7,7 @@

1407

   </maintainer>

1408

   <longdescription>

1409

     Python matplotlib-enhancer library which painlessly creates

1410

-    beautiful default matplotlib plots. 

1411

+    beautiful default matplotlib plots.

1412

   </longdescription>

1413

   <upstream>

1414

     <remote-id type="pypi">prettyplotlib</remote-id>

1415

1416

diff --git a/dev-python/prov/metadata.xml b/dev-python/prov/metadata.xml

1417

index df7ac6500..1b4b150fb 100644

1418

--- a/dev-python/prov/metadata.xml

1419

+++ b/dev-python/prov/metadata.xml

1420

@@ -1,4 +1,4 @@

1421

-<?xml version="1.0" encoding="UTF-8"?>

1422

+<?xml version='1.0' encoding='UTF-8'?>

1423

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1424

 <pkgmetadata>

1425

   <maintainer type="person">

1426

1427

diff --git a/dev-python/ptyprocess/metadata.xml b/dev-python/ptyprocess/metadata.xml

1428

index 3ff841fbb..ea8694355 100644

1429

--- a/dev-python/ptyprocess/metadata.xml

1430

+++ b/dev-python/ptyprocess/metadata.xml

1431

@@ -1,4 +1,4 @@

1432

-<?xml version="1.0" encoding="UTF-8"?>

1433

+<?xml version='1.0' encoding='UTF-8'?>

1434

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1435

 <pkgmetadata>

1436

   <maintainer type="project">

1437

1438

diff --git a/dev-python/pydotplus/metadata.xml b/dev-python/pydotplus/metadata.xml

1439

index 3e56e273a..eb80ef0cd 100644

1440

--- a/dev-python/pydotplus/metadata.xml

1441

+++ b/dev-python/pydotplus/metadata.xml

1442

@@ -1,4 +1,4 @@

1443

-<?xml version="1.0" encoding="UTF-8"?>

1444

+<?xml version='1.0' encoding='UTF-8'?>

1445

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1446

 <pkgmetadata>

1447

   <maintainer type="person">

1448

1449

diff --git a/dev-python/pyfftw/metadata.xml b/dev-python/pyfftw/metadata.xml

1450

index 039274847..174e4dbdc 100644

1451

--- a/dev-python/pyfftw/metadata.xml

1452

+++ b/dev-python/pyfftw/metadata.xml

1453

@@ -1,4 +1,4 @@

1454

-<?xml version="1.0" encoding="UTF-8"?>

1455

+<?xml version='1.0' encoding='UTF-8'?>

1456

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1457

 <pkgmetadata>

1458

   <maintainer type="person">

1459

1460

diff --git a/dev-python/pyhdf/metadata.xml b/dev-python/pyhdf/metadata.xml

1461

index bc7e4eaea..d38ca85ff 100644

1462

--- a/dev-python/pyhdf/metadata.xml

1463

+++ b/dev-python/pyhdf/metadata.xml

1464

@@ -1,4 +1,4 @@

1465

-<?xml version="1.0" encoding="UTF-8"?>

1466

+<?xml version='1.0' encoding='UTF-8'?>

1467

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1468

 <pkgmetadata>

1469

   <maintainer type="person">

1470

1471

diff --git a/dev-python/pylibconfig2/metadata.xml b/dev-python/pylibconfig2/metadata.xml

1472

index ddcf65796..e260b7fe1 100644

1473

--- a/dev-python/pylibconfig2/metadata.xml

1474

+++ b/dev-python/pylibconfig2/metadata.xml

1475

@@ -1,4 +1,4 @@

1476

-<?xml version="1.0" encoding="UTF-8"?>

1477

+<?xml version='1.0' encoding='UTF-8'?>

1478

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1479

 <pkgmetadata>

1480

   <maintainer type="person">

1481

@@ -19,7 +19,7 @@

1482

     only, and represented as a string automatically.

1483

   </longdescription>

1484

   <upstream>

1485

-    <remote-id type="pypi">pylibconfig2</remote-id>

1486

     <remote-id type="github">heinzK1X/pylibconfig2</remote-id>

1487

+    <remote-id type="pypi">pylibconfig2</remote-id>

1488

   </upstream>

1489

 </pkgmetadata>

1490

1491

diff --git a/dev-python/pynomo/metadata.xml b/dev-python/pynomo/metadata.xml

1492

index 0ece82028..f365ddf66 100644

1493

--- a/dev-python/pynomo/metadata.xml

1494

+++ b/dev-python/pynomo/metadata.xml

1495

@@ -1,4 +1,4 @@

1496

-<?xml version="1.0" encoding="UTF-8"?>

1497

+<?xml version='1.0' encoding='UTF-8'?>

1498

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1499

 <pkgmetadata>

1500

   <maintainer type="person">

1501

@@ -8,7 +8,7 @@

1502

   Pynomo is a program to create (pdf) nomographs

1503

   (nomograms) using Python interpreter. A nomograph (nomogram) is a

1504

   graphical solution to an equation.

1505

-</longdescription>

1506

+  </longdescription>

1507

   <upstream>

1508

     <remote-id type="sourceforge">pynomo</remote-id>

1509

   </upstream>

1510

1511

diff --git a/dev-python/pysolar/metadata.xml b/dev-python/pysolar/metadata.xml

1512

index a7996892d..fe8be1b12 100644

1513

--- a/dev-python/pysolar/metadata.xml

1514

+++ b/dev-python/pysolar/metadata.xml

1515

@@ -1,4 +1,4 @@

1516

-<?xml version="1.0" encoding="UTF-8"?>

1517

+<?xml version='1.0' encoding='UTF-8'?>

1518

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1519

 <pkgmetadata>

1520

   <maintainer type="project">

1521

@@ -11,9 +11,8 @@

1522

  extremely precise ephemeris calculations, and more. Pysolar can

1523

  calculate the location of the sun or the shading percentage as a

1524

  function of time for a row of 2-axis tracked panels.

1525

-</longdescription>

1526

+  </longdescription>

1527

   <upstream>

1528

-    <remote-id type="pypi">Pysolar</remote-id>

1529

     <remote-id type="github">pingswept/pysolar</remote-id>

1530

   </upstream>

1531

 </pkgmetadata>

1532

1533

diff --git a/dev-python/python-ivi/metadata.xml b/dev-python/python-ivi/metadata.xml

1534

index 9d59c0382..630240a1d 100644

1535

--- a/dev-python/python-ivi/metadata.xml

1536

+++ b/dev-python/python-ivi/metadata.xml

1537

@@ -1,4 +1,4 @@

1538

-<?xml version="1.0" encoding="UTF-8"?>

1539

+<?xml version='1.0' encoding='UTF-8'?>

1540

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1541

 <pkgmetadata>

1542

   <maintainer type="person">

1543

1544

diff --git a/dev-python/python-vxi11/metadata.xml b/dev-python/python-vxi11/metadata.xml

1545

index 095fd5346..72510adc7 100644

1546

--- a/dev-python/python-vxi11/metadata.xml

1547

+++ b/dev-python/python-vxi11/metadata.xml

1548

@@ -1,4 +1,4 @@

1549

-<?xml version="1.0" encoding="UTF-8"?>

1550

+<?xml version='1.0' encoding='UTF-8'?>

1551

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1552

 <pkgmetadata>

1553

   <maintainer type="person">

1554

1555

diff --git a/dev-python/pythoncgns/metadata.xml b/dev-python/pythoncgns/metadata.xml

1556

index 116c8c0b3..35f35f0b7 100644

1557

--- a/dev-python/pythoncgns/metadata.xml

1558

+++ b/dev-python/pythoncgns/metadata.xml

1559

@@ -1,4 +1,4 @@

1560

-<?xml version="1.0" encoding="UTF-8"?>

1561

+<?xml version='1.0' encoding='UTF-8'?>

1562

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1563

 <pkgmetadata>

1564

   <maintainer type="project">

1565

1566

diff --git a/dev-python/pythonqt/metadata.xml b/dev-python/pythonqt/metadata.xml

1567

index e44f1d0fe..364efbdc3 100644

1568

--- a/dev-python/pythonqt/metadata.xml

1569

+++ b/dev-python/pythonqt/metadata.xml

1570

@@ -1,4 +1,4 @@

1571

-<?xml version="1.0" encoding="UTF-8"?>

1572

+<?xml version='1.0' encoding='UTF-8'?>

1573

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1574

 <pkgmetadata>

1575

   <maintainer type="project">

1576

1577

diff --git a/dev-python/qtconsole/metadata.xml b/dev-python/qtconsole/metadata.xml

1578

index 83b712f7e..93199c605 100644

1579

--- a/dev-python/qtconsole/metadata.xml

1580

+++ b/dev-python/qtconsole/metadata.xml

1581

@@ -1,4 +1,4 @@

1582

-<?xml version="1.0" encoding="UTF-8"?>

1583

+<?xml version='1.0' encoding='UTF-8'?>

1584

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1585

 <pkgmetadata>

1586

   <maintainer type="project">

1587

@@ -9,7 +9,4 @@

1588

     A rich Qt-based console for working with Jupyter kernels,

1589

     supporting rich media output, session export, and more.

1590

   </longdescription>

1591

-  <upstream>

1592

-    <remote-id type="pypi">qtconsole</remote-id>

1593

-  </upstream>

1594

 </pkgmetadata>

1595

1596

diff --git a/dev-python/snakemake/metadata.xml b/dev-python/snakemake/metadata.xml

1597

index 9fb8f07d6..a21e3edfd 100644

1598

--- a/dev-python/snakemake/metadata.xml

1599

+++ b/dev-python/snakemake/metadata.xml

1600

@@ -10,7 +10,6 @@

1601

     <name>Python</name>

1602

   </maintainer>

1603

   <upstream>

1604

-    <remote-id type="github">dev-python/snakemake</remote-id>

1605

     <remote-id type="bitbucket">johanneskoester/snakemake</remote-id>

1606

     <remote-id type="pypi">snakemake</remote-id>

1607

   </upstream>

1608

1609

diff --git a/dev-python/specutils/metadata.xml b/dev-python/specutils/metadata.xml

1610

index 15cc63844..6e70cb363 100644

1611

--- a/dev-python/specutils/metadata.xml

1612

+++ b/dev-python/specutils/metadata.xml

1613

@@ -1,4 +1,4 @@

1614

-<?xml version="1.0" encoding="UTF-8"?>

1615

+<?xml version='1.0' encoding='UTF-8'?>

1616

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1617

 <pkgmetadata>

1618

   <maintainer type="project">

1619

@@ -11,7 +11,6 @@

1620

 		into a class with special handling of 1D spectra.

1621

 	</longdescription>

1622

   <upstream>

1623

-    <remote-id type="pypi">specutils</remote-id>

1624

     <remote-id type="github">astropy/specutils</remote-id>

1625

   </upstream>

1626

 </pkgmetadata>

1627

1628

diff --git a/dev-python/symengine/metadata.xml b/dev-python/symengine/metadata.xml

1629

index 00019a052..ffc78518d 100644

1630

--- a/dev-python/symengine/metadata.xml

1631

+++ b/dev-python/symengine/metadata.xml

1632

@@ -1,4 +1,4 @@

1633

-<?xml version="1.0" encoding="UTF-8"?>

1634

+<?xml version='1.0' encoding='UTF-8'?>

1635

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1636

 <pkgmetadata>

1637

   <maintainer type="person">

1638

1639

diff --git a/dev-python/testpath/metadata.xml b/dev-python/testpath/metadata.xml

1640

index cba9cbf64..7183f762d 100644

1641

--- a/dev-python/testpath/metadata.xml

1642

+++ b/dev-python/testpath/metadata.xml

1643

@@ -1,4 +1,4 @@

1644

-<?xml version="1.0" encoding="UTF-8"?>

1645

+<?xml version='1.0' encoding='UTF-8'?>

1646

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1647

 <pkgmetadata>

1648

   <maintainer type="project">

1649

@@ -11,7 +11,4 @@

1650

     filesystem, and tools for mocking system commands and recording

1651

     calls to those.

1652

   </longdescription>

1653

-  <upstream>

1654

-    <remote-id type="github">jupyter/testpath</remote-id>

1655

-  </upstream>

1656

 </pkgmetadata>

1657

1658

diff --git a/dev-python/traitlets/metadata.xml b/dev-python/traitlets/metadata.xml

1659

index fa50e6184..a1cab5d48 100644

1660

--- a/dev-python/traitlets/metadata.xml

1661

+++ b/dev-python/traitlets/metadata.xml

1662

@@ -1,4 +1,4 @@

1663

-<?xml version="1.0" encoding="UTF-8"?>

1664

+<?xml version='1.0' encoding='UTF-8'?>

1665

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1666

 <pkgmetadata>

1667

   <maintainer type="project">

1668

@@ -11,7 +11,6 @@

1669

     the config system of IPython and Jupyter.

1670

   </longdescription>

1671

   <upstream>

1672

-    <remote-id type="pypi">traitlets</remote-id>

1673

     <remote-id type="github">ipython/traitlets</remote-id>

1674

   </upstream>

1675

 </pkgmetadata>

1676

1677

diff --git a/dev-python/ufl/metadata.xml b/dev-python/ufl/metadata.xml

1678

index af0327cec..480a531aa 100644

1679

--- a/dev-python/ufl/metadata.xml

1680

+++ b/dev-python/ufl/metadata.xml

1681

@@ -1,4 +1,4 @@

1682

-<?xml version="1.0" encoding="UTF-8"?>

1683

+<?xml version='1.0' encoding='UTF-8'?>

1684

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1685

 <pkgmetadata>

1686

 	<maintainer type="project">

1687

@@ -14,6 +14,5 @@

1688

 	</longdescription>

1689

 	<upstream>

1690

 		<remote-id type="bitbucket">fenics-project/ufl</remote-id>

1691

-		<remote-id type="launchpad">ufl</remote-id>

1692

 	</upstream>

1693

 </pkgmetadata>

1694

1695

diff --git a/dev-python/viper/metadata.xml b/dev-python/viper/metadata.xml

1696

index 430a78511..18c1efff5 100644

1697

--- a/dev-python/viper/metadata.xml

1698

+++ b/dev-python/viper/metadata.xml

1699

@@ -1,4 +1,4 @@

1700

-<?xml version="1.0" encoding="UTF-8"?>

1701

+<?xml version='1.0' encoding='UTF-8'?>

1702

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1703

 <pkgmetadata>

1704

 	<maintainer type="project">

1705

1706

diff --git a/dev-python/widgetsnbextension/metadata.xml b/dev-python/widgetsnbextension/metadata.xml

1707

index 9f0544f5e..56daebe56 100644

1708

--- a/dev-python/widgetsnbextension/metadata.xml

1709

+++ b/dev-python/widgetsnbextension/metadata.xml

1710

@@ -1,4 +1,4 @@

1711

-<?xml version="1.0" encoding="UTF-8"?>

1712

+<?xml version='1.0' encoding='UTF-8'?>

1713

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1714

 <pkgmetadata>

1715

   <maintainer type="project">

1716

@@ -10,6 +10,5 @@

1717

   </longdescription>

1718

   <upstream>

1719

     <remote-id type="pypi">widgetsnbextension</remote-id>

1720

-    <remote-id type="github">ipython/ipywidgets</remote-id>

1721

   </upstream>

1722

 </pkgmetadata>

1723

1724

diff --git a/dev-tcltk/img_rotate/metadata.xml b/dev-tcltk/img_rotate/metadata.xml

1725

index f1310b451..2cb3f2bf3 100644

1726

--- a/dev-tcltk/img_rotate/metadata.xml

1727

+++ b/dev-tcltk/img_rotate/metadata.xml

1728

@@ -1,4 +1,4 @@

1729

-<?xml version="1.0" encoding="UTF-8"?>

1730

+<?xml version='1.0' encoding='UTF-8'?>

1731

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1732

 <pkgmetadata>

1733

 	<maintainer type="project">

1734

1735

diff --git a/dev-tcltk/togl/metadata.xml b/dev-tcltk/togl/metadata.xml

1736

index d19c9b2f3..9499d8d89 100644

1737

--- a/dev-tcltk/togl/metadata.xml

1738

+++ b/dev-tcltk/togl/metadata.xml

1739

@@ -1,4 +1,4 @@

1740

-<?xml version="1.0" encoding="UTF-8"?>

1741

+<?xml version='1.0' encoding='UTF-8'?>

1742

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1743

 <pkgmetadata>

1744

   <maintainer type="project">

1745

1746

diff --git a/dev-tex/pythontex/metadata.xml b/dev-tex/pythontex/metadata.xml

1747

index 17dc4a877..dc4de7cb4 100644

1748

--- a/dev-tex/pythontex/metadata.xml

1749

+++ b/dev-tex/pythontex/metadata.xml

1750

@@ -1,4 +1,4 @@

1751

-<?xml version="1.0" encoding="UTF-8"?>

1752

+<?xml version='1.0' encoding='UTF-8'?>

1753

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1754

 <pkgmetadata>

1755

   <maintainer type="project">

1756

1757

diff --git a/media-gfx/brlcad/metadata.xml b/media-gfx/brlcad/metadata.xml

1758

index fd0913372..a5755a70a 100644

1759

--- a/media-gfx/brlcad/metadata.xml

1760

+++ b/media-gfx/brlcad/metadata.xml

1761

@@ -1,4 +1,4 @@

1762

-<?xml version="1.0" encoding="UTF-8"?>

1763

+<?xml version='1.0' encoding='UTF-8'?>

1764

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1765

 <pkgmetadata>

1766

   <maintainer type="person">

1767

1768

diff --git a/media-gfx/librecad/metadata.xml b/media-gfx/librecad/metadata.xml

1769

index 56059e49f..83d16d787 100644

1770

--- a/media-gfx/librecad/metadata.xml

1771

+++ b/media-gfx/librecad/metadata.xml

1772

@@ -1,4 +1,4 @@

1773

-<?xml version="1.0" encoding="UTF-8"?>

1774

+<?xml version='1.0' encoding='UTF-8'?>

1775

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1776

 <pkgmetadata>

1777

   <maintainer type="person">

1778

1779

diff --git a/media-libs/glbinding/metadata.xml b/media-libs/glbinding/metadata.xml

1780

index 4d6a1c0ac..5f82e29cb 100644

1781

--- a/media-libs/glbinding/metadata.xml

1782

+++ b/media-libs/glbinding/metadata.xml

1783

@@ -1,4 +1,4 @@

1784

-<?xml version="1.0" encoding="UTF-8"?>

1785

+<?xml version='1.0' encoding='UTF-8'?>

1786

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1787

 <pkgmetadata>

1788

   <maintainer type="person">

1789

1790

diff --git a/sci-astronomy/libthesky/metadata.xml b/sci-astronomy/libthesky/metadata.xml

1791

index 03ad4b5fd..374f32bf7 100644

1792

--- a/sci-astronomy/libthesky/metadata.xml

1793

+++ b/sci-astronomy/libthesky/metadata.xml

1794

@@ -1,4 +1,4 @@

1795

-<?xml version="1.0" encoding="UTF-8"?>

1796

+<?xml version='1.0' encoding='UTF-8'?>

1797

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1798

 <pkgmetadata>

1799

   <maintainer type="person">

1800

1801

diff --git a/sci-astronomy/mosstack/metadata.xml b/sci-astronomy/mosstack/metadata.xml

1802

index c8bd774a7..df5606cca 100644

1803

--- a/sci-astronomy/mosstack/metadata.xml

1804

+++ b/sci-astronomy/mosstack/metadata.xml

1805

@@ -1,4 +1,4 @@

1806

-<?xml version="1.0" encoding="UTF-8"?>

1807

+<?xml version='1.0' encoding='UTF-8'?>

1808

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1809

 <pkgmetadata>

1810

   <maintainer type="person">

1811

1812

diff --git a/sci-biology/AlignGraph/metadata.xml b/sci-biology/AlignGraph/metadata.xml

1813

index f060cdca7..7863f973a 100644

1814

--- a/sci-biology/AlignGraph/metadata.xml

1815

+++ b/sci-biology/AlignGraph/metadata.xml

1816

@@ -1,4 +1,4 @@

1817

-<?xml version="1.0" encoding="UTF-8"?>

1818

+<?xml version='1.0' encoding='UTF-8'?>

1819

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1820

 <pkgmetadata>

1821

   <maintainer type="person">

1822

1823

diff --git a/sci-biology/Atlas2/metadata.xml b/sci-biology/Atlas2/metadata.xml

1824

index 3ff6ceef1..4338746db 100644

1825

--- a/sci-biology/Atlas2/metadata.xml

1826

+++ b/sci-biology/Atlas2/metadata.xml

1827

@@ -1,4 +1,4 @@

1828

-<?xml version="1.0" encoding="UTF-8"?>

1829

+<?xml version='1.0' encoding='UTF-8'?>

1830

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1831

 <pkgmetadata>

1832

   <maintainer type="person">

1833

@@ -13,7 +13,7 @@

1834

     Atlas2 is a next-generation sequencing suite of variant analysis

1835

     tools specializing in the separation of true SNPs and insertions

1836

     and deletions (indels) from sequencing and mapping errors in Whole

1837

-    Exome Capture Sequencing (WECS) data. 

1838

+    Exome Capture Sequencing (WECS) data.

1839

   </longdescription>

1840

   <upstream>

1841

     <remote-id type="sourceforge">downloads</remote-id>

1842

1843

diff --git a/sci-biology/BBmap/metadata.xml b/sci-biology/BBmap/metadata.xml

1844

index 40ba306f4..75990319d 100644

1845

--- a/sci-biology/BBmap/metadata.xml

1846

+++ b/sci-biology/BBmap/metadata.xml

1847

@@ -1,4 +1,4 @@

1848

-<?xml version="1.0" encoding="UTF-8"?>

1849

+<?xml version='1.0' encoding='UTF-8'?>

1850

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1851

 <pkgmetadata>

1852

   <maintainer type="person">

1853

1854

diff --git a/sci-biology/BRANCH/metadata.xml b/sci-biology/BRANCH/metadata.xml

1855

index e6ac3bb3f..ab90aa364 100644

1856

--- a/sci-biology/BRANCH/metadata.xml

1857

+++ b/sci-biology/BRANCH/metadata.xml

1858

@@ -1,4 +1,4 @@

1859

-<?xml version="1.0" encoding="UTF-8"?>

1860

+<?xml version='1.0' encoding='UTF-8'?>

1861

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1862

 <pkgmetadata>

1863

   <maintainer type="person">

1864

1865

diff --git a/sci-biology/BamView/metadata.xml b/sci-biology/BamView/metadata.xml

1866

index e25129704..ecc16433b 100644

1867

--- a/sci-biology/BamView/metadata.xml

1868

+++ b/sci-biology/BamView/metadata.xml

1869

@@ -1,4 +1,4 @@

1870

-<?xml version="1.0" encoding="UTF-8"?>

1871

+<?xml version='1.0' encoding='UTF-8'?>

1872

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1873

 <pkgmetadata>

1874

   <maintainer type="person">

1875

1876

diff --git a/sci-biology/BlastToSam/metadata.xml b/sci-biology/BlastToSam/metadata.xml

1877

index 9885a3a72..86bbb3764 100644

1878

--- a/sci-biology/BlastToSam/metadata.xml

1879

+++ b/sci-biology/BlastToSam/metadata.xml

1880

@@ -1,4 +1,4 @@

1881

-<?xml version="1.0" encoding="UTF-8"?>

1882

+<?xml version='1.0' encoding='UTF-8'?>

1883

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1884

 <pkgmetadata>

1885

   <maintainer type="person">

1886

1887

diff --git a/sci-biology/EBARDenovo/metadata.xml b/sci-biology/EBARDenovo/metadata.xml

1888

index 3aa5ff5d7..d0f646374 100644

1889

--- a/sci-biology/EBARDenovo/metadata.xml

1890

+++ b/sci-biology/EBARDenovo/metadata.xml

1891

@@ -1,4 +1,4 @@

1892

-<?xml version="1.0" encoding="UTF-8"?>

1893

+<?xml version='1.0' encoding='UTF-8'?>

1894

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1895

 <pkgmetadata>

1896

   <maintainer type="person">

1897

@@ -10,6 +10,6 @@

1898

     <name>Gentoo Biology Project</name>

1899

   </maintainer>

1900

   <upstream>

1901

-    <remote-id type="sourceforge">ebardenovo</remote-id>

1902

+    <remote-id type="sourceforge">downloads</remote-id>

1903

   </upstream>

1904

 </pkgmetadata>

1905

1906

diff --git a/sci-biology/FLASH/metadata.xml b/sci-biology/FLASH/metadata.xml

1907

index bb87910ab..d0f646374 100644

1908

--- a/sci-biology/FLASH/metadata.xml

1909

+++ b/sci-biology/FLASH/metadata.xml

1910

@@ -1,4 +1,4 @@

1911

-<?xml version="1.0" encoding="UTF-8"?>

1912

+<?xml version='1.0' encoding='UTF-8'?>

1913

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1914

 <pkgmetadata>

1915

   <maintainer type="person">

1916

@@ -10,6 +10,6 @@

1917

     <name>Gentoo Biology Project</name>

1918

   </maintainer>

1919

   <upstream>

1920

-    <remote-id type="sourceforge">flashpage</remote-id>

1921

+    <remote-id type="sourceforge">downloads</remote-id>

1922

   </upstream>

1923

 </pkgmetadata>

1924

1925

diff --git a/sci-biology/HTSeq/metadata.xml b/sci-biology/HTSeq/metadata.xml

1926

index a51edc8ae..b08ab454b 100644

1927

--- a/sci-biology/HTSeq/metadata.xml

1928

+++ b/sci-biology/HTSeq/metadata.xml

1929

@@ -1,4 +1,4 @@

1930

-<?xml version="1.0" encoding="UTF-8"?>

1931

+<?xml version='1.0' encoding='UTF-8'?>

1932

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1933

 <pkgmetadata>

1934

   <maintainer type="person">

1935

1936

diff --git a/sci-biology/IMAGE/metadata.xml b/sci-biology/IMAGE/metadata.xml

1937

index 6d3e53e2e..3dcd782d1 100644

1938

--- a/sci-biology/IMAGE/metadata.xml

1939

+++ b/sci-biology/IMAGE/metadata.xml

1940

@@ -1,4 +1,4 @@

1941

-<?xml version="1.0" encoding="UTF-8"?>

1942

+<?xml version='1.0' encoding='UTF-8'?>

1943

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1944

 <pkgmetadata>

1945

   <maintainer type="person">

1946

1947

diff --git a/sci-biology/InterMine/metadata.xml b/sci-biology/InterMine/metadata.xml

1948

index 5ac633a2e..5c9c50b32 100644

1949

--- a/sci-biology/InterMine/metadata.xml

1950

+++ b/sci-biology/InterMine/metadata.xml

1951

@@ -1,4 +1,4 @@

1952

-<?xml version="1.0" encoding="UTF-8"?>

1953

+<?xml version='1.0' encoding='UTF-8'?>

1954

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1955

 <pkgmetadata>

1956

   <maintainer type="person">

1957

1958

diff --git a/sci-biology/MeV/metadata.xml b/sci-biology/MeV/metadata.xml

1959

index ef6150af4..6ed96d4bc 100644

1960

--- a/sci-biology/MeV/metadata.xml

1961

+++ b/sci-biology/MeV/metadata.xml

1962

@@ -1,4 +1,4 @@

1963

-<?xml version="1.0" encoding="UTF-8"?>

1964

+<?xml version='1.0' encoding='UTF-8'?>

1965

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1966

 <pkgmetadata>

1967

   <maintainer type="person">

1968

@@ -9,6 +9,6 @@

1969

     <name>Gentoo Biology Project</name>

1970

   </maintainer>

1971

   <upstream>

1972

-    <remote-id type="sourceforge">mev-tm4</remote-id>

1973

+    <remote-id type="sourceforge">downloads</remote-id>

1974

   </upstream>

1975

 </pkgmetadata>

1976

1977

diff --git a/sci-biology/NGSTools/metadata.xml b/sci-biology/NGSTools/metadata.xml

1978

index 7361e7654..fe6859dd7 100644

1979

--- a/sci-biology/NGSTools/metadata.xml

1980

+++ b/sci-biology/NGSTools/metadata.xml

1981

@@ -1,4 +1,4 @@

1982

-<?xml version="1.0" encoding="UTF-8"?>

1983

+<?xml version='1.0' encoding='UTF-8'?>

1984

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1985

 <pkgmetadata>

1986

   <maintainer type="person">

1987

1988

diff --git a/sci-biology/OBO-Edit/metadata.xml b/sci-biology/OBO-Edit/metadata.xml

1989

index acbbc35a4..115a34c41 100644

1990

--- a/sci-biology/OBO-Edit/metadata.xml

1991

+++ b/sci-biology/OBO-Edit/metadata.xml

1992

@@ -1,4 +1,4 @@

1993

-<?xml version="1.0" encoding="UTF-8"?>

1994

+<?xml version='1.0' encoding='UTF-8'?>

1995

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

1996

 <pkgmetadata>

1997

 	<maintainer type="person">

1998

1999

diff --git a/sci-biology/RSeQC/metadata.xml b/sci-biology/RSeQC/metadata.xml

2000

index 0452b2835..54bdfb597 100644

2001

--- a/sci-biology/RSeQC/metadata.xml

2002

+++ b/sci-biology/RSeQC/metadata.xml

2003

@@ -1,4 +1,4 @@

2004

-<?xml version="1.0" encoding="UTF-8"?>

2005

+<?xml version='1.0' encoding='UTF-8'?>

2006

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

2007

 <pkgmetadata>

2008

   <maintainer type="person">

2009

2010

diff --git a/sci-biology/Ray/metadata.xml b/sci-biology/Ray/metadata.xml

2011

index 982286fb0..fb7092ff7 100644

2012

--- a/sci-biology/Ray/metadata.xml

2013

+++ b/sci-biology/Ray/metadata.xml

2014

@@ -1,4 +1,4 @@

2015

-<?xml version="1.0" encoding="UTF-8"?>

2016

+<?xml version='1.0' encoding='UTF-8'?>

2017

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

2018

 <pkgmetadata>

2019

 	<maintainer type="person">

2020

2021

diff --git a/sci-biology/STAR/metadata.xml b/sci-biology/STAR/metadata.xml

2022

index 68af3388c..f053775b5 100644

2023

--- a/sci-biology/STAR/metadata.xml

2024

+++ b/sci-biology/STAR/metadata.xml

2025

@@ -1,4 +1,4 @@

2026

-<?xml version="1.0" encoding="UTF-8"?>

2027

+<?xml version='1.0' encoding='UTF-8'?>

2028

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

2029

 <pkgmetadata>

2030

   <maintainer type="person">

2031

2032

diff --git a/sci-biology/SolexaQA/metadata.xml b/sci-biology/SolexaQA/metadata.xml

2033

index c9f605e75..f7714240a 100644

2034

--- a/sci-biology/SolexaQA/metadata.xml

2035

+++ b/sci-biology/SolexaQA/metadata.xml

2036

@@ -1,4 +1,4 @@

2037

-<?xml version="1.0" encoding="UTF-8"?>

2038

+<?xml version='1.0' encoding='UTF-8'?>

2039

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

2040

 <pkgmetadata>

2041

   <maintainer type="person">

2042

@@ -10,6 +10,6 @@

2043

     <name>Gentoo Biology Project</name>

2044

   </maintainer>

2045

   <upstream>

2046

-    <remote-id type="sourceforge">clview</remote-id>

2047

+    <remote-id type="sourceforge">solexaqa</remote-id>

2048

   </upstream>

2049

 </pkgmetadata>

2050

2051

diff --git a/sci-biology/TransDecoder/metadata.xml b/sci-biology/TransDecoder/metadata.xml

2052

index 42a56a27e..1a522bbe1 100644

2053

--- a/sci-biology/TransDecoder/metadata.xml

2054

+++ b/sci-biology/TransDecoder/metadata.xml

2055

@@ -1,4 +1,4 @@

2056

-<?xml version="1.0" encoding="UTF-8"?>

2057

+<?xml version='1.0' encoding='UTF-8'?>

2058

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

2059

 <pkgmetadata>

2060

   <maintainer type="person">

2061

@@ -11,6 +11,5 @@

2062

   </maintainer>

2063

   <upstream>

2064

     <remote-id type="github">TransDecoder/TransDecoder</remote-id>

2065

-    <remote-id type="sourceforge">transdecoder</remote-id>

2066

   </upstream>

2067

 </pkgmetadata>

2068

2069

diff --git a/sci-biology/Trinotate/metadata.xml b/sci-biology/Trinotate/metadata.xml

2070

index f409887af..b183ac8ee 100644

2071

--- a/sci-biology/Trinotate/metadata.xml

2072

+++ b/sci-biology/Trinotate/metadata.xml

2073

@@ -1,4 +1,4 @@

2074

-<?xml version="1.0" encoding="UTF-8"?>

2075

+<?xml version='1.0' encoding='UTF-8'?>

2076

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

2077

 <pkgmetadata>

2078

   <maintainer type="person">

2079

2080

diff --git a/sci-biology/VarScan-bin/metadata.xml b/sci-biology/VarScan-bin/metadata.xml

2081

index e27dba2e9..01850f614 100644

2082

--- a/sci-biology/VarScan-bin/metadata.xml

2083

+++ b/sci-biology/VarScan-bin/metadata.xml

2084

@@ -6,7 +6,6 @@

2085

     <name>Gentoo Science Project</name>

2086

   </maintainer>

2087

   <upstream>

2088

-    <remote-id type="sourceforge">varscan</remote-id>

2089

     <remote-id type="github">dkoboldt/varscan</remote-id>

2090

   </upstream>

2091

 </pkgmetadata>

2092

2093

diff --git a/sci-biology/VarScan/metadata.xml b/sci-biology/VarScan/metadata.xml

2094

index e27dba2e9..c9cbb67e6 100644

2095

--- a/sci-biology/VarScan/metadata.xml

2096

+++ b/sci-biology/VarScan/metadata.xml

2097

@@ -6,7 +6,7 @@

2098

     <name>Gentoo Science Project</name>

2099

   </maintainer>

2100

   <upstream>

2101

-    <remote-id type="sourceforge">varscan</remote-id>

2102

     <remote-id type="github">dkoboldt/varscan</remote-id>

2103

+    <remote-id type="sourceforge">varscan</remote-id>

2104

   </upstream>

2105

 </pkgmetadata>

2106

2107

diff --git a/sci-biology/abacas/metadata.xml b/sci-biology/abacas/metadata.xml

2108

index c458ee97f..d0f646374 100644

2109

--- a/sci-biology/abacas/metadata.xml

2110

+++ b/sci-biology/abacas/metadata.xml

2111

@@ -1,4 +1,4 @@

2112

-<?xml version="1.0" encoding="UTF-8"?>

2113

+<?xml version='1.0' encoding='UTF-8'?>

2114

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

2115

 <pkgmetadata>

2116

   <maintainer type="person">

2117

@@ -10,6 +10,6 @@

2118

     <name>Gentoo Biology Project</name>

2119

   </maintainer>

2120

   <upstream>

2121

-    <remote-id type="sourceforge">abacas</remote-id>

2122

+    <remote-id type="sourceforge">downloads</remote-id>

2123

   </upstream>

2124

 </pkgmetadata>

2125

2126

diff --git a/sci-biology/amos/metadata.xml b/sci-biology/amos/metadata.xml

2127

index d8574e5f0..5b2ca1a74 100644

2128

--- a/sci-biology/amos/metadata.xml

2129

+++ b/sci-biology/amos/metadata.xml

2130

@@ -1,4 +1,4 @@

2131

-<?xml version="1.0" encoding="UTF-8"?>

2132

+<?xml version='1.0' encoding='UTF-8'?>

2133

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

2134

 <pkgmetadata>

2135

   <maintainer type="person">

2136

2137

diff --git a/sci-biology/bambus/metadata.xml b/sci-biology/bambus/metadata.xml

2138

index 4736dbff7..1054fc1ed 100644

2139

--- a/sci-biology/bambus/metadata.xml

2140

+++ b/sci-biology/bambus/metadata.xml

2141

@@ -1,4 +1,4 @@

2142

-<?xml version="1.0" encoding="UTF-8"?>

2143

+<?xml version='1.0' encoding='UTF-8'?>

2144

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

2145

 <pkgmetadata>

2146

 	<maintainer type="person">

2147

@@ -11,6 +11,6 @@

2148

 	</maintainer>

2149

 	<longdescription>Bambus is the first general purpose scaffolder that is publicly available as an open source package. While most other scaffolders are closely tied to a specific assembly program, Bambus accepts the output from most current assemblers and provides the user with great flexibility in choosing the scaffolding parameters. In particular, Bambus is able to accept contig linking data other than specified by mate-pairs. Such sources of information include alignment to a reference genome (Bambus can directly use the output of MUMmer), physical mapping data, or information about gene synteny.</longdescription>

2150

 	<upstream>

2151

-		<remote-id type="sourceforge">amos</remote-id>

2152

+		<remote-id type="sourceforge">mira-assembler</remote-id>

2153

 	</upstream>

2154

 </pkgmetadata>

2155

2156

diff --git a/sci-biology/bamtools/metadata.xml b/sci-biology/bamtools/metadata.xml

2157

index fb098c773..7f0271ab3 100644

2158

--- a/sci-biology/bamtools/metadata.xml

2159

+++ b/sci-biology/bamtools/metadata.xml

2160

@@ -1,4 +1,4 @@

2161

-<?xml version="1.0" encoding="UTF-8"?>

2162

+<?xml version='1.0' encoding='UTF-8'?>

2163

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

2164

 <pkgmetadata>

2165

   <maintainer type="person">

2166

2167

diff --git a/sci-biology/bcftools/metadata.xml b/sci-biology/bcftools/metadata.xml

2168

index 74c17a114..d65c87aa3 100644

2169

--- a/sci-biology/bcftools/metadata.xml

2170

+++ b/sci-biology/bcftools/metadata.xml

2171

@@ -1,4 +1,4 @@

2172

-<?xml version="1.0" encoding="UTF-8"?>

2173

+<?xml version='1.0' encoding='UTF-8'?>

2174

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

2175

 <pkgmetadata>

2176

   <maintainer type="person">

2177

2178

diff --git a/sci-biology/biobambam/metadata.xml b/sci-biology/biobambam/metadata.xml

2179

index a3e55a407..38f3b45cf 100644

2180

--- a/sci-biology/biobambam/metadata.xml

2181

+++ b/sci-biology/biobambam/metadata.xml

2182

@@ -1,4 +1,4 @@

2183

-<?xml version="1.0" encoding="UTF-8"?>

2184

+<?xml version='1.0' encoding='UTF-8'?>

2185

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

2186

 <pkgmetadata>

2187

   <maintainer type="project">

2188

@@ -14,7 +14,7 @@ bammaskflags: reads BAM and writes BAM while masking (removing) bits from the fl

2189

 bamrecompress: reads BAM and writes BAM with a defined compression setting. This tool is capable of multi-threading.

2190

 bamsort: reads BAM and writes BAM resorted by coordinates or query name

2191

 bamtofastq: reads BAM and writes FastQ; output can be collated or uncollated by query name

2192

-</longdescription>

2193

+  </longdescription>

2194

   <upstream>

2195

     <remote-id type="github">gt1/biobambam</remote-id>

2196

   </upstream>

2197

2198

diff --git a/sci-biology/biobambam2/metadata.xml b/sci-biology/biobambam2/metadata.xml

2199

index a3e55a407..cb036d969 100644

2200

--- a/sci-biology/biobambam2/metadata.xml

2201

+++ b/sci-biology/biobambam2/metadata.xml

2202

@@ -1,4 +1,4 @@

2203

-<?xml version="1.0" encoding="UTF-8"?>

2204

+<?xml version='1.0' encoding='UTF-8'?>

2205

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

2206

 <pkgmetadata>

2207

   <maintainer type="project">

2208

@@ -14,8 +14,8 @@ bammaskflags: reads BAM and writes BAM while masking (removing) bits from the fl

2209

 bamrecompress: reads BAM and writes BAM with a defined compression setting. This tool is capable of multi-threading.

2210

 bamsort: reads BAM and writes BAM resorted by coordinates or query name

2211

 bamtofastq: reads BAM and writes FastQ; output can be collated or uncollated by query name

2212

-</longdescription>

2213

+  </longdescription>

2214

   <upstream>

2215

-    <remote-id type="github">gt1/biobambam</remote-id>

2216

+    <remote-id type="github">gt1/biobambam2</remote-id>

2217

   </upstream>

2218

 </pkgmetadata>

2219

2220

diff --git a/sci-biology/bru2nii/metadata.xml b/sci-biology/bru2nii/metadata.xml

2221

index 0cec33715..90ef9367d 100644

2222

--- a/sci-biology/bru2nii/metadata.xml

2223

+++ b/sci-biology/bru2nii/metadata.xml

2224

@@ -1,4 +1,4 @@

2225

-<?xml version="1.0" encoding="UTF-8"?>

2226

+<?xml version='1.0' encoding='UTF-8'?>

2227

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

2228

 <pkgmetadata>

2229

   <maintainer type="project">

2230

@@ -8,7 +8,7 @@

2231

   <longdescription lang="en">

2232

     This is a simple tool for converting Bruker ParaVision MRI data to

2233

     the NIfTI file format. It includes both a drag-and-drop graphical

2234

-    interface (Bru2Nii) as well as a command line tool (Bru2). 

2235

+    interface (Bru2Nii) as well as a command line tool (Bru2).

2236

   </longdescription>

2237

   <upstream>

2238

     <remote-id type="github">neurolabusc/Bru2Nii</remote-id>

2239

2240

diff --git a/sci-biology/bx-python/metadata.xml b/sci-biology/bx-python/metadata.xml

2241

index 0a7390bf1..8cdea5d5a 100644

2242

--- a/sci-biology/bx-python/metadata.xml

2243

+++ b/sci-biology/bx-python/metadata.xml

2244

@@ -1,4 +1,4 @@

2245

-<?xml version="1.0" encoding="UTF-8"?>

2246

+<?xml version='1.0' encoding='UTF-8'?>

2247

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

2248

 <pkgmetadata>

2249

   <maintainer type="person">

2250

@@ -10,7 +10,7 @@

2251

     <name>Gentoo Biology Project</name>

2252

   </maintainer>

2253

   <upstream>

2254

-    <remote-id type="pypi">bx-python</remote-id>

2255

     <remote-id type="bitbucket">james_taylor/bx-python</remote-id>

2256

+    <remote-id type="pypi">bx-python</remote-id>

2257

   </upstream>

2258

 </pkgmetadata>

2259

2260

diff --git a/sci-biology/cd-hit/metadata.xml b/sci-biology/cd-hit/metadata.xml

2261

index 1f3b07521..7f866330d 100644

2262

--- a/sci-biology/cd-hit/metadata.xml

2263

+++ b/sci-biology/cd-hit/metadata.xml

2264

@@ -21,7 +21,6 @@ duplicates from pyrosequencing reads. The usage of other programs and

2265

 scripts can be found in CD-HIT user's guide.

2266

 	</longdescription>

2267

 	<upstream>

2268

-		<remote-id type="google-code">cdhit</remote-id>

2269

 		<remote-id type="github">weizhongli/cdhit</remote-id>

2270

 	</upstream>

2271

 </pkgmetadata>

2272

2273

diff --git a/sci-biology/clview/metadata.xml b/sci-biology/clview/metadata.xml

2274

index 7adf609cd..31020917d 100644

2275

--- a/sci-biology/clview/metadata.xml

2276

+++ b/sci-biology/clview/metadata.xml

2277

@@ -1,4 +1,4 @@

2278

-<?xml version="1.0" encoding="UTF-8"?>

2279

+<?xml version='1.0' encoding='UTF-8'?>

2280

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

2281

 <pkgmetadata>

2282

 	<maintainer type="person">

2283

2284

diff --git a/sci-biology/codonw/metadata.xml b/sci-biology/codonw/metadata.xml

2285

index f66d7b796..fcb129873 100644

2286

--- a/sci-biology/codonw/metadata.xml

2287

+++ b/sci-biology/codonw/metadata.xml

2288

@@ -1,4 +1,4 @@

2289

-<?xml version="1.0" encoding="UTF-8"?>

2290

+<?xml version='1.0' encoding='UTF-8'?>

2291

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

2292

 <pkgmetadata>

2293

   <maintainer type="project">

2294

2295

diff --git a/sci-biology/conifer/metadata.xml b/sci-biology/conifer/metadata.xml

2296

index fe4173913..d0f646374 100644

2297

--- a/sci-biology/conifer/metadata.xml

2298

+++ b/sci-biology/conifer/metadata.xml

2299

@@ -1,4 +1,4 @@

2300

-<?xml version="1.0" encoding="UTF-8"?>

2301

+<?xml version='1.0' encoding='UTF-8'?>

2302

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

2303

 <pkgmetadata>

2304

   <maintainer type="person">

2305

2306

diff --git a/sci-biology/cortex_var/metadata.xml b/sci-biology/cortex_var/metadata.xml

2307

index aeef1bbec..fe8a20d2e 100644

2308

--- a/sci-biology/cortex_var/metadata.xml

2309

+++ b/sci-biology/cortex_var/metadata.xml

2310

@@ -1,4 +1,4 @@

2311

-<?xml version="1.0" encoding="UTF-8"?>

2312

+<?xml version='1.0' encoding='UTF-8'?>

2313

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

2314

 <pkgmetadata>

2315

   <maintainer type="person">

2316

2317

diff --git a/sci-biology/cutadapt/metadata.xml b/sci-biology/cutadapt/metadata.xml

2318

index d432ff9a4..b6f11bf51 100644

2319

--- a/sci-biology/cutadapt/metadata.xml

2320

+++ b/sci-biology/cutadapt/metadata.xml

2321

@@ -10,7 +10,7 @@

2322

     <name>Gentoo Biology Project</name>

2323

   </maintainer>

2324

   <upstream>

2325

-    <remote-id type="pypi">cutadapt</remote-id>

2326

     <remote-id type="github">marcelm/cutadapt</remote-id>

2327

+    <remote-id type="pypi">cutadapt</remote-id>

2328

   </upstream>

2329

 </pkgmetadata>

2330

2331

diff --git a/sci-biology/dipy/metadata.xml b/sci-biology/dipy/metadata.xml

2332

index 1df8ab815..23f050681 100644

2333

--- a/sci-biology/dipy/metadata.xml

2334

+++ b/sci-biology/dipy/metadata.xml

2335

@@ -1,4 +1,4 @@

2336

-<?xml version="1.0" encoding="UTF-8"?>

2337

+<?xml version='1.0' encoding='UTF-8'?>

2338

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

2339

 <pkgmetadata>

2340

   <maintainer type="person">

2341

2342

diff --git a/sci-biology/discrover/metadata.xml b/sci-biology/discrover/metadata.xml

2343

index bab24b6a0..1055813e9 100644

2344

--- a/sci-biology/discrover/metadata.xml

2345

+++ b/sci-biology/discrover/metadata.xml

2346

@@ -1,4 +1,4 @@

2347

-<?xml version="1.0" encoding="UTF-8"?>

2348

+<?xml version='1.0' encoding='UTF-8'?>

2349

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

2350

 <pkgmetadata>

2351

   <maintainer type="person">

2352

2353

diff --git a/sci-biology/epga/metadata.xml b/sci-biology/epga/metadata.xml

2354

index 991e17bf8..615525179 100644

2355

--- a/sci-biology/epga/metadata.xml

2356

+++ b/sci-biology/epga/metadata.xml

2357

@@ -1,4 +1,4 @@

2358

-<?xml version="1.0" encoding="UTF-8"?>

2359

+<?xml version='1.0' encoding='UTF-8'?>

2360

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

2361

 <pkgmetadata>

2362

   <maintainer type="person">

2363

2364

diff --git a/sci-biology/estscan/metadata.xml b/sci-biology/estscan/metadata.xml

2365

index d709341c0..138f8c095 100644

2366

--- a/sci-biology/estscan/metadata.xml

2367

+++ b/sci-biology/estscan/metadata.xml

2368

@@ -1,4 +1,4 @@

2369

-<?xml version="1.0" encoding="UTF-8"?>

2370

+<?xml version='1.0' encoding='UTF-8'?>

2371

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

2372

 <pkgmetadata>

2373

   <maintainer type="person">

2374

@@ -14,6 +14,6 @@

2375

     <flag name="ifc">Undocumented USE</flag>

2376

   </use>

2377

   <upstream>

2378

-    <remote-id type="sourceforge">estscan</remote-id>

2379

+    <remote-id type="sourceforge">downloads</remote-id>

2380

   </upstream>

2381

 </pkgmetadata>

2382

2383

diff --git a/sci-biology/exonerate-gff3/metadata.xml b/sci-biology/exonerate-gff3/metadata.xml

2384

index 10ca6b365..378558dab 100644

2385

--- a/sci-biology/exonerate-gff3/metadata.xml

2386

+++ b/sci-biology/exonerate-gff3/metadata.xml

2387

@@ -1,4 +1,4 @@

2388

-<?xml version="1.0" encoding="UTF-8"?>

2389

+<?xml version='1.0' encoding='UTF-8'?>

2390

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

2391

 <pkgmetadata>

2392

   <maintainer type="person">

2393

2394

diff --git a/sci-biology/fastx_toolkit/metadata.xml b/sci-biology/fastx_toolkit/metadata.xml

2395

index 8203c3958..4db9d1693 100644

2396

--- a/sci-biology/fastx_toolkit/metadata.xml

2397

+++ b/sci-biology/fastx_toolkit/metadata.xml

2398

@@ -1,4 +1,4 @@

2399

-<?xml version="1.0" encoding="UTF-8"?>

2400

+<?xml version='1.0' encoding='UTF-8'?>

2401

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

2402

 <pkgmetadata>

2403

   <maintainer type="project">

2404

2405

diff --git a/sci-biology/ffindex/metadata.xml b/sci-biology/ffindex/metadata.xml

2406

index ccb4049fc..18e09466d 100644

2407

--- a/sci-biology/ffindex/metadata.xml

2408

+++ b/sci-biology/ffindex/metadata.xml

2409

@@ -1,4 +1,4 @@

2410

-<?xml version="1.0" encoding="UTF-8"?>

2411

+<?xml version='1.0' encoding='UTF-8'?>

2412

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

2413

 <pkgmetadata>

2414

   <maintainer type="person">

2415

@@ -9,7 +9,4 @@

2416

     <email>sci-biology@g.o</email>

2417

     <name>Gentoo Biology Project</name>

2418

   </maintainer>

2419

-  <upstream>

2420

-    <remote-id type="github">TransDecoder/TransDecoder</remote-id>

2421

-  </upstream>

2422

 </pkgmetadata>

2423

2424

diff --git a/sci-biology/flexbar/metadata.xml b/sci-biology/flexbar/metadata.xml

2425

index 6bf81a0d4..adfdd237a 100644

2426

--- a/sci-biology/flexbar/metadata.xml

2427

+++ b/sci-biology/flexbar/metadata.xml

2428

@@ -10,7 +10,6 @@

2429

 		<name>Gentoo Biology Project</name>

2430

 	</maintainer>

2431

 	<upstream>

2432

-		<remote-id type="sourceforge">flexbar</remote-id>

2433

 		<remote-id type="github">seqan/flexbar</remote-id>

2434

 	</upstream>

2435

 </pkgmetadata>

2436

2437

diff --git a/sci-biology/freebayes/metadata.xml b/sci-biology/freebayes/metadata.xml

2438

index a82cda59f..fdd189bd5 100644

2439

--- a/sci-biology/freebayes/metadata.xml

2440

+++ b/sci-biology/freebayes/metadata.xml

2441

@@ -1,4 +1,4 @@

2442

-<?xml version="1.0" encoding="UTF-8"?>

2443

+<?xml version='1.0' encoding='UTF-8'?>

2444

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

2445

 <pkgmetadata>

2446

   <maintainer type="person">

2447

2448

diff --git a/sci-biology/fsa/metadata.xml b/sci-biology/fsa/metadata.xml

2449

index ec2601d87..d0f646374 100644

2450

--- a/sci-biology/fsa/metadata.xml

2451

+++ b/sci-biology/fsa/metadata.xml

2452

@@ -1,4 +1,4 @@

2453

-<?xml version="1.0" encoding="UTF-8"?>

2454

+<?xml version='1.0' encoding='UTF-8'?>

2455

 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">

2456

 <pkgmetadata>

2457

   <maintainer type="person">

2458

@@ -10,6 +10,6 @@

2459

     <name>Gentoo Biology Project</name>

2460

   </maintainer>

2461

   <upstream>

2462

-    <remote-id type="sourceforge">fsa</remote-id>

2463

+    <remote-id type="sourceforge">downloads</remote-id>

2464

   </upstream>

2465

 </pkgmetadata>

Gentoo Archives: gentoo-commits