Gentoo Archives: gentoo-commits

From: Justin Lecher <jlec@g.o>
To: gentoo-commits@l.g.o
Subject: [gentoo-commits] proj/sci:master commit in: dev-python/ptyprocess/, sci-electronics/player/, sci-biology/BBmap/, ...
Date: Sun, 30 Apr 2017 10:13:15
Message-Id: 1493547168.3199ec7737e923dc19479e5de7b31bb583071931.jlec@gentoo
1 commit: 3199ec7737e923dc19479e5de7b31bb583071931
2 Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
3 AuthorDate: Sun Apr 30 10:12:48 2017 +0000
4 Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
5 CommitDate: Sun Apr 30 10:12:48 2017 +0000
6 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=3199ec77
7
8 Cleanup remote IDs
9
10 Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
11
12 app-benchmarks/btl/metadata.xml | 2 +-
13 app-benchmarks/numbench/metadata.xml | 2 +-
14 app-doc/root-docs/metadata.xml | 5 +----
15 app-vim/vim-gromacs/metadata.xml | 4 ++--
16 dev-cpp/eigen/metadata.xml | 2 +-
17 dev-cpp/icnc/metadata.xml | 5 +----
18 dev-java/gluegen/metadata.xml | 4 ++--
19 dev-java/htsjdk/metadata.xml | 1 -
20 dev-java/jeuclid-core/metadata.xml | 4 ++--
21 dev-java/jogl/metadata.xml | 4 ++--
22 dev-lang/conceptual/metadata.xml | 2 +-
23 dev-lang/terra/metadata.xml | 2 +-
24 dev-libs/boost-compute/metadata.xml | 2 +-
25 dev-libs/libcuda/metadata.xml | 2 +-
26 dev-libs/libgdev/metadata.xml | 2 +-
27 dev-libs/utf8proc/metadata.xml | 4 ++--
28 dev-ml/lacaml/metadata.xml | 2 +-
29 dev-perl/BTLib/metadata.xml | 2 +-
30 dev-perl/opal-client/metadata.xml | 2 +-
31 dev-python/PeakUtils/metadata.xml | 2 +-
32 dev-python/PyVISA-py/metadata.xml | 4 ++--
33 dev-python/PyVISA/metadata.xml | 4 ++--
34 dev-python/RecSQL/metadata.xml | 5 +----
35 dev-python/arrayfire-python/metadata.xml | 2 +-
36 dev-python/astropy-helpers/metadata.xml | 3 +--
37 dev-python/astroquery/metadata.xml | 3 +--
38 dev-python/brewer2mpl/metadata.xml | 4 ++--
39 dev-python/ccdproc/metadata.xml | 3 +--
40 dev-python/coards/metadata.xml | 2 +-
41 dev-python/dijitso/metadata.xml | 5 ++---
42 dev-python/dimensionful/metadata.xml | 2 +-
43 dev-python/ffc/metadata.xml | 3 +--
44 dev-python/ffnet/metadata.xml | 1 -
45 dev-python/ffnetui/metadata.xml | 1 -
46 dev-python/fiat/metadata.xml | 3 +--
47 dev-python/gammapy/metadata.xml | 3 +--
48 dev-python/hdf5storage/metadata.xml | 4 ++--
49 dev-python/imageutils/metadata.xml | 3 +--
50 dev-python/instant/metadata.xml | 3 +--
51 dev-python/ipykernel/metadata.xml | 3 +--
52 dev-python/ipyparallel/metadata.xml | 5 +----
53 dev-python/ipython_genutils/metadata.xml | 3 +--
54 dev-python/ipywidgets/metadata.xml | 2 +-
55 dev-python/jupyter_client/metadata.xml | 5 +----
56 dev-python/jupyter_console/metadata.xml | 5 +----
57 dev-python/jupyter_core/metadata.xml | 5 +----
58 dev-python/matlab_wrapper/metadata.xml | 4 ++--
59 dev-python/matplotlib-venn/metadata.xml | 1 -
60 dev-python/matplotlib2tikz/metadata.xml | 3 +--
61 dev-python/matrix2latex/metadata.xml | 4 ++--
62 dev-python/meshpy/metadata.xml | 4 ++--
63 dev-python/metakernel/metadata.xml | 4 ++--
64 dev-python/metakernel_bash/metadata.xml | 4 ++--
65 dev-python/metakernel_python/metadata.xml | 4 ++--
66 dev-python/nbconvert/metadata.xml | 5 +----
67 dev-python/nbdime/metadata.xml | 8 ++------
68 dev-python/nbformat/metadata.xml | 5 +----
69 dev-python/newrelic/metadata.xml | 2 +-
70 dev-python/notebook/metadata.xml | 2 +-
71 dev-python/nvidia-ml-py/metadata.xml | 2 +-
72 dev-python/omniorbpy/metadata.xml | 2 +-
73 dev-python/opal-client/metadata.xml | 2 +-
74 dev-python/pamela/metadata.xml | 4 ++--
75 dev-python/photutils/metadata.xml | 3 +--
76 dev-python/pickleshare/metadata.xml | 3 +--
77 dev-python/prettyplotlib/metadata.xml | 4 ++--
78 dev-python/prov/metadata.xml | 2 +-
79 dev-python/ptyprocess/metadata.xml | 2 +-
80 dev-python/pydotplus/metadata.xml | 2 +-
81 dev-python/pyfftw/metadata.xml | 2 +-
82 dev-python/pyhdf/metadata.xml | 2 +-
83 dev-python/pylibconfig2/metadata.xml | 4 ++--
84 dev-python/pynomo/metadata.xml | 4 ++--
85 dev-python/pysolar/metadata.xml | 5 ++---
86 dev-python/python-ivi/metadata.xml | 2 +-
87 dev-python/python-vxi11/metadata.xml | 2 +-
88 dev-python/pythoncgns/metadata.xml | 2 +-
89 dev-python/pythonqt/metadata.xml | 2 +-
90 dev-python/qtconsole/metadata.xml | 5 +----
91 dev-python/snakemake/metadata.xml | 1 -
92 dev-python/specutils/metadata.xml | 3 +--
93 dev-python/symengine/metadata.xml | 2 +-
94 dev-python/testpath/metadata.xml | 5 +----
95 dev-python/traitlets/metadata.xml | 3 +--
96 dev-python/ufl/metadata.xml | 3 +--
97 dev-python/viper/metadata.xml | 2 +-
98 dev-python/widgetsnbextension/metadata.xml | 3 +--
99 dev-tcltk/img_rotate/metadata.xml | 2 +-
100 dev-tcltk/togl/metadata.xml | 2 +-
101 dev-tex/pythontex/metadata.xml | 2 +-
102 media-gfx/brlcad/metadata.xml | 2 +-
103 media-gfx/librecad/metadata.xml | 2 +-
104 media-libs/glbinding/metadata.xml | 2 +-
105 sci-astronomy/libthesky/metadata.xml | 2 +-
106 sci-astronomy/mosstack/metadata.xml | 2 +-
107 sci-biology/AlignGraph/metadata.xml | 2 +-
108 sci-biology/Atlas2/metadata.xml | 4 ++--
109 sci-biology/BBmap/metadata.xml | 2 +-
110 sci-biology/BRANCH/metadata.xml | 2 +-
111 sci-biology/BamView/metadata.xml | 2 +-
112 sci-biology/BlastToSam/metadata.xml | 2 +-
113 sci-biology/EBARDenovo/metadata.xml | 4 ++--
114 sci-biology/FLASH/metadata.xml | 4 ++--
115 sci-biology/HTSeq/metadata.xml | 2 +-
116 sci-biology/IMAGE/metadata.xml | 2 +-
117 sci-biology/InterMine/metadata.xml | 2 +-
118 sci-biology/MeV/metadata.xml | 4 ++--
119 sci-biology/NGSTools/metadata.xml | 2 +-
120 sci-biology/OBO-Edit/metadata.xml | 2 +-
121 sci-biology/RSeQC/metadata.xml | 2 +-
122 sci-biology/Ray/metadata.xml | 2 +-
123 sci-biology/STAR/metadata.xml | 2 +-
124 sci-biology/SolexaQA/metadata.xml | 4 ++--
125 sci-biology/TransDecoder/metadata.xml | 3 +--
126 sci-biology/Trinotate/metadata.xml | 2 +-
127 sci-biology/VarScan-bin/metadata.xml | 1 -
128 sci-biology/VarScan/metadata.xml | 2 +-
129 sci-biology/abacas/metadata.xml | 4 ++--
130 sci-biology/amos/metadata.xml | 2 +-
131 sci-biology/bambus/metadata.xml | 4 ++--
132 sci-biology/bamtools/metadata.xml | 2 +-
133 sci-biology/bcftools/metadata.xml | 2 +-
134 sci-biology/biobambam/metadata.xml | 4 ++--
135 sci-biology/biobambam2/metadata.xml | 6 +++---
136 sci-biology/bru2nii/metadata.xml | 4 ++--
137 sci-biology/bx-python/metadata.xml | 4 ++--
138 sci-biology/cd-hit/metadata.xml | 1 -
139 sci-biology/clview/metadata.xml | 2 +-
140 sci-biology/codonw/metadata.xml | 2 +-
141 sci-biology/conifer/metadata.xml | 2 +-
142 sci-biology/cortex_var/metadata.xml | 2 +-
143 sci-biology/cutadapt/metadata.xml | 2 +-
144 sci-biology/dipy/metadata.xml | 2 +-
145 sci-biology/discrover/metadata.xml | 2 +-
146 sci-biology/epga/metadata.xml | 2 +-
147 sci-biology/estscan/metadata.xml | 4 ++--
148 sci-biology/exonerate-gff3/metadata.xml | 2 +-
149 sci-biology/fastx_toolkit/metadata.xml | 2 +-
150 sci-biology/ffindex/metadata.xml | 5 +----
151 sci-biology/flexbar/metadata.xml | 1 -
152 sci-biology/freebayes/metadata.xml | 2 +-
153 sci-biology/fsa/metadata.xml | 4 ++--
154 sci-biology/full_lengther_next/metadata.xml | 5 +----
155 sci-biology/gap2caf/metadata.xml | 2 +-
156 sci-biology/gatk/metadata.xml | 2 +-
157 sci-biology/genomeview-bin/metadata.xml | 4 ++--
158 sci-biology/gffutils/metadata.xml | 2 +-
159 sci-biology/glean/metadata.xml | 4 ++--
160 sci-biology/igv/metadata.xml | 2 +-
161 sci-biology/jtreeview/metadata.xml | 2 +-
162 sci-biology/khmer/metadata.xml | 4 ++--
163 sci-biology/lighter/metadata.xml | 2 +-
164 sci-biology/lucy/metadata.xml | 2 +-
165 sci-biology/manatee-igs/metadata.xml | 2 +-
166 sci-biology/manatee-jcvi/metadata.xml | 4 ++--
167 sci-biology/metaseq/metadata.xml | 2 +-
168 sci-biology/minced/metadata.xml | 4 ++--
169 sci-biology/mira/metadata.xml | 2 +-
170 sci-biology/mne-python/metadata.xml | 2 +-
171 sci-biology/mrfast/metadata.xml | 2 +-
172 sci-biology/mrsfast/metadata.xml | 2 +-
173 sci-biology/ncbi-genome-download/metadata.xml | 6 +++---
174 sci-biology/ngsview/metadata.xml | 4 ++--
175 sci-biology/nilearn/metadata.xml | 2 +-
176 sci-biology/nitime/metadata.xml | 2 +-
177 sci-biology/parafly/metadata.xml | 2 +-
178 sci-biology/pb-honey/metadata.xml | 2 +-
179 sci-biology/pb-jelly/metadata.xml | 2 +-
180 sci-biology/perlprimer/metadata.xml | 2 +-
181 sci-biology/picard/metadata.xml | 2 +-
182 sci-biology/psychopy/metadata.xml | 1 -
183 sci-biology/pybedtools/metadata.xml | 2 +-
184 sci-biology/pyfaidx/metadata.xml | 2 +-
185 sci-biology/pysam/metadata.xml | 6 +-----
186 sci-biology/pysurfer/metadata.xml | 2 +-
187 sci-biology/quast/metadata.xml | 2 +-
188 sci-biology/rum/metadata.xml | 4 ++--
189 sci-biology/sabre/metadata.xml | 2 +-
190 sci-biology/sailfish/metadata.xml | 2 +-
191 sci-biology/salmon/metadata.xml | 2 +-
192 sci-biology/samstat/metadata.xml | 2 +-
193 sci-biology/samtools/metadata.xml | 2 +-
194 sci-biology/scaffold_builder/metadata.xml | 4 ++--
195 sci-biology/scbi_blast/metadata.xml | 1 -
196 sci-biology/scbi_fasta/metadata.xml | 1 -
197 sci-biology/scbi_mapreduce/metadata.xml | 1 -
198 sci-biology/scbi_plot/metadata.xml | 1 -
199 sci-biology/screed/metadata.xml | 4 ++--
200 sci-biology/scythe/metadata.xml | 2 +-
201 sci-biology/sga/metadata.xml | 2 +-
202 sci-biology/sickle/metadata.xml | 2 +-
203 sci-biology/skewer-bin/metadata.xml | 2 +-
204 sci-biology/staden/metadata.xml | 2 +-
205 sci-biology/subread/metadata.xml | 2 +-
206 sci-biology/swissknife/metadata.xml | 2 +-
207 sci-biology/trinityrnaseq/metadata.xml | 2 +-
208 sci-biology/trowel/metadata.xml | 4 ++--
209 sci-biology/vcftools/metadata.xml | 2 +-
210 sci-biology/wgs-assembler/metadata.xml | 2 +-
211 sci-chemistry/GromacsWrapper/metadata.xml | 5 +----
212 sci-chemistry/NMRdyn/metadata.xml | 2 +-
213 sci-chemistry/burrow-owl/metadata.xml | 2 +-
214 sci-chemistry/cnsface/metadata.xml | 2 +-
215 sci-chemistry/mdsctk/metadata.xml | 2 +-
216 sci-chemistry/openbabel-java/metadata.xml | 2 +-
217 sci-chemistry/openbabel-perl/metadata.xml | 2 +-
218 sci-chemistry/openbabel-python/metadata.xml | 2 +-
219 sci-chemistry/openbabel-ruby/metadata.xml | 2 +-
220 sci-chemistry/openbabel/metadata.xml | 2 +-
221 sci-chemistry/pesto/metadata.xml | 2 +-
222 sci-chemistry/pymol-plugins-psico/metadata.xml | 2 +-
223 sci-chemistry/pyquante/metadata.xml | 2 +-
224 sci-chemistry/rosetta-tools/metadata.xml | 2 +-
225 sci-electronics/minipro/metadata.xml | 2 +-
226 sci-electronics/player/metadata.xml | 2 +-
227 sci-electronics/stage/metadata.xml | 2 +-
228 sci-electronics/tnt/metadata.xml | 2 +-
229 sci-geosciences/pydap/metadata.xml | 4 ++--
230 sci-geosciences/pydap_handlers_cdms/metadata.xml | 4 ++--
231 sci-geosciences/pydap_handlers_csv/metadata.xml | 4 ++--
232 sci-geosciences/pydap_handlers_hdf5/metadata.xml | 4 ++--
233 sci-geosciences/pydap_handlers_nca/metadata.xml | 4 ++--
234 sci-geosciences/pydap_handlers_netcdf/metadata.xml | 4 ++--
235 sci-geosciences/pydap_handlers_proxy/metadata.xml | 4 ++--
236 sci-geosciences/pydap_handlers_sql/metadata.xml | 4 ++--
237 sci-geosciences/pydap_handlers_sqlite/metadata.xml | 4 ++--
238 sci-geosciences/pydap_responses_kml/metadata.xml | 4 ++--
239 sci-geosciences/pydap_responses_matlab/metadata.xml | 4 ++--
240 sci-geosciences/pydap_responses_netcdf/metadata.xml | 4 ++--
241 sci-geosciences/pydap_responses_wms/metadata.xml | 4 ++--
242 sci-geosciences/pydap_responses_xls/metadata.xml | 4 ++--
243 sci-libs/armadillo/metadata.xml | 4 ++--
244 sci-libs/asl/metadata.xml | 4 ++--
245 sci-libs/atlas/metadata.xml | 4 ++--
246 sci-libs/cgnstools/metadata.xml | 2 +-
247 sci-libs/clblas/metadata.xml | 2 +-
248 sci-libs/clfft/metadata.xml | 2 +-
249 sci-libs/clrng/metadata.xml | 2 +-
250 sci-libs/dealii/metadata.xml | 2 +-
251 sci-libs/elmer-eio/metadata.xml | 4 ++--
252 sci-libs/elmer-hutiter/metadata.xml | 4 ++--
253 sci-libs/framewave/metadata.xml | 2 +-
254 sci-libs/geom/metadata.xml | 2 +-
255 sci-libs/ghmm/metadata.xml | 2 +-
256 sci-libs/htslib/metadata.xml | 2 +-
257 sci-libs/io_lib/metadata.xml | 4 ++--
258 sci-libs/itk/metadata.xml | 4 ++--
259 sci-libs/k3match/metadata.xml | 5 +----
260 sci-libs/lapackpp/metadata.xml | 6 +++---
261 sci-libs/libcgnsoo/metadata.xml | 2 +-
262 sci-libs/libmaus/metadata.xml | 4 ++--
263 sci-libs/libmaus2/metadata.xml | 4 ++--
264 sci-libs/libsc/metadata.xml | 2 +-
265 sci-libs/libsufr/metadata.xml | 2 +-
266 sci-libs/lwpr/metadata.xml | 4 ++--
267 sci-libs/matc/metadata.xml | 4 ++--
268 sci-libs/nibabel/metadata.xml | 2 +-
269 sci-libs/nipy/metadata.xml | 4 ++--
270 sci-libs/nipype/metadata.xml | 2 +-
271 sci-libs/o2scl/metadata.xml | 4 ++--
272 sci-libs/openblas/metadata.xml | 2 +-
273 sci-libs/p4est/metadata.xml | 2 +-
274 sci-libs/pagmo/metadata.xml | 2 +-
275 sci-libs/pg2plplot/metadata.xml | 4 ++--
276 sci-libs/pydicom/metadata.xml | 2 +-
277 sci-libs/rdkit/metadata.xml | 2 +-
278 sci-libs/scikits_image/metadata.xml | 9 +++------
279 sci-libs/spglib/metadata.xml | 4 ++--
280 sci-libs/starparse/metadata.xml | 2 +-
281 sci-libs/symengine/metadata.xml | 8 ++++----
282 sci-libs/vxl/metadata.xml | 2 +-
283 sci-libs/wannier90/metadata.xml | 6 +++---
284 sci-libs/xraylib/metadata.xml | 2 +-
285 sci-libs/zarja/metadata.xml | 4 ++--
286 sci-mathematics/acl2/metadata.xml | 6 +++---
287 sci-mathematics/burrtools/metadata.xml | 4 ++--
288 sci-mathematics/cipi/metadata.xml | 4 ++--
289 sci-mathematics/dolfin/metadata.xml | 2 +-
290 sci-mathematics/gambit/metadata.xml | 6 +++---
291 sci-mathematics/kayali/metadata.xml | 4 ++--
292 sci-mathematics/mdp/metadata.xml | 2 +-
293 sci-mathematics/netgen/metadata.xml | 2 +-
294 sci-mathematics/open-axiom/metadata.xml | 4 ++--
295 sci-mathematics/pulp/metadata.xml | 2 +-
296 sci-mathematics/ufc/metadata.xml | 2 +-
297 sci-mathematics/yorick/metadata.xml | 4 ++--
298 sci-misc/elmer-elmergrid/metadata.xml | 4 ++--
299 sci-misc/elmer-fem/metadata.xml | 4 ++--
300 sci-misc/elmer-front/metadata.xml | 4 ++--
301 sci-misc/elmer-meshgen2d/metadata.xml | 4 ++--
302 sci-misc/elmer-post/metadata.xml | 4 ++--
303 sci-misc/hfst/metadata.xml | 2 +-
304 sci-misc/irstlm/metadata.xml | 4 ++--
305 sci-misc/jwnl/metadata.xml | 4 ++--
306 sci-misc/kaldi/metadata.xml | 2 +-
307 sci-misc/nltk/metadata.xml | 4 ++--
308 sci-misc/opennlp-maxent/metadata.xml | 4 ++--
309 sci-misc/praat/metadata.xml | 2 +-
310 sci-misc/pywordnet/metadata.xml | 4 ++--
311 sci-misc/simx/metadata.xml | 2 +-
312 sci-physics/bigdft/metadata.xml | 6 +++---
313 sci-physics/clip/metadata.xml | 2 +-
314 sci-physics/elk/metadata.xml | 10 +++++-----
315 sci-physics/genfit/metadata.xml | 2 +-
316 sci-physics/quinoa/metadata.xml | 5 +----
317 sci-visualization/forge/metadata.xml | 2 +-
318 sci-visualization/mantid/metadata.xml | 4 ++--
319 sci-visualization/mayavi/metadata.xml | 4 ++--
320 sci-visualization/mricrogl/metadata.xml | 2 +-
321 sci-visualization/mricron/metadata.xml | 2 +-
322 sci-visualization/nodemon/metadata.xml | 4 ++--
323 sci-visualization/surf-ice/metadata.xml | 2 +-
324 sci-visualization/yt/metadata.xml | 2 +-
325 sys-cluster/htcondor/metadata.xml | 4 ++--
326 sys-cluster/modules/metadata.xml | 2 +-
327 sys-cluster/pyslice/metadata.xml | 2 +-
328 www-client/casperjs/metadata.xml | 2 +-
329 x11-misc/envytools/metadata.xml | 2 +-
330 318 files changed, 421 insertions(+), 513 deletions(-)
331
332 diff --git a/app-benchmarks/btl/metadata.xml b/app-benchmarks/btl/metadata.xml
333 index 1276dc69c..0e64e0503 100644
334 --- a/app-benchmarks/btl/metadata.xml
335 +++ b/app-benchmarks/btl/metadata.xml
336 @@ -1,4 +1,4 @@
337 -<?xml version="1.0" encoding="UTF-8"?>
338 +<?xml version='1.0' encoding='UTF-8'?>
339 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
340 <pkgmetadata>
341 <maintainer type="person">
342
343 diff --git a/app-benchmarks/numbench/metadata.xml b/app-benchmarks/numbench/metadata.xml
344 index 810ffee12..91ead3a68 100644
345 --- a/app-benchmarks/numbench/metadata.xml
346 +++ b/app-benchmarks/numbench/metadata.xml
347 @@ -1,4 +1,4 @@
348 -<?xml version="1.0" encoding="UTF-8"?>
349 +<?xml version='1.0' encoding='UTF-8'?>
350 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
351 <pkgmetadata>
352 <maintainer type="person">
353
354 diff --git a/app-doc/root-docs/metadata.xml b/app-doc/root-docs/metadata.xml
355 index 47caabb1d..27aa72d21 100644
356 --- a/app-doc/root-docs/metadata.xml
357 +++ b/app-doc/root-docs/metadata.xml
358 @@ -1,4 +1,4 @@
359 -<?xml version="1.0" encoding="UTF-8"?>
360 +<?xml version='1.0' encoding='UTF-8'?>
361 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
362 <pkgmetadata>
363 <maintainer type="person">
364 @@ -19,7 +19,4 @@
365 <flag name="math">Provide all math related documentation</flag>
366 <flag name="metric">Default to A4 paper size and metric measurement. Letter will be used otherwise</flag>
367 </use>
368 - <upstream>
369 - <remote-id type="sourceforge">tmva</remote-id>
370 - </upstream>
371 </pkgmetadata>
372
373 diff --git a/app-vim/vim-gromacs/metadata.xml b/app-vim/vim-gromacs/metadata.xml
374 index 704b2eb0e..4a5c9ab9d 100644
375 --- a/app-vim/vim-gromacs/metadata.xml
376 +++ b/app-vim/vim-gromacs/metadata.xml
377 @@ -1,4 +1,4 @@
378 -<?xml version="1.0" encoding="UTF-8"?>
379 +<?xml version='1.0' encoding='UTF-8'?>
380 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
381 <pkgmetadata>
382 <maintainer type="project">
383 @@ -7,7 +7,7 @@
384 </maintainer>
385 <longdescription lang="en">
386 VIM syntax plugin which provides syntax highlighting for the gromacs files.
387 -</longdescription>
388 + </longdescription>
389 <upstream>
390 <remote-id type="github">HubLot/vim-gromacs</remote-id>
391 </upstream>
392
393 diff --git a/dev-cpp/eigen/metadata.xml b/dev-cpp/eigen/metadata.xml
394 index 6d5cb6666..cfb88d051 100644
395 --- a/dev-cpp/eigen/metadata.xml
396 +++ b/dev-cpp/eigen/metadata.xml
397 @@ -1,4 +1,4 @@
398 -<?xml version="1.0" encoding="UTF-8"?>
399 +<?xml version='1.0' encoding='UTF-8'?>
400 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
401 <pkgmetadata>
402 <maintainer type="project">
403
404 diff --git a/dev-cpp/icnc/metadata.xml b/dev-cpp/icnc/metadata.xml
405 index 4ab9fc666..1b36049c6 100644
406 --- a/dev-cpp/icnc/metadata.xml
407 +++ b/dev-cpp/icnc/metadata.xml
408 @@ -1,11 +1,8 @@
409 -<?xml version="1.0" encoding="UTF-8"?>
410 +<?xml version='1.0' encoding='UTF-8'?>
411 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
412 <pkgmetadata>
413 <maintainer type="person">
414 <email>ottxor@g.o</email>
415 <name>Christoph Junghans</name>
416 </maintainer>
417 - <upstream>
418 - <remote-id type="github">icnc/icnc</remote-id>
419 - </upstream>
420 </pkgmetadata>
421
422 diff --git a/dev-java/gluegen/metadata.xml b/dev-java/gluegen/metadata.xml
423 index 9fc3e6b55..fa1706ad0 100644
424 --- a/dev-java/gluegen/metadata.xml
425 +++ b/dev-java/gluegen/metadata.xml
426 @@ -1,4 +1,4 @@
427 -<?xml version="1.0" encoding="UTF-8"?>
428 +<?xml version='1.0' encoding='UTF-8'?>
429 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
430 <pkgmetadata>
431 <maintainer type="project">
432 @@ -15,7 +15,7 @@ generates interfaces. It has the ability to perform significant transformations
433 on the IR before glue code emission. GlueGen is currently powerful enough to
434 bind even low-level APIs such as the Java Native Interface (JNI) and the AWT
435 Native Interface (JAWT) back up to the Java programming language.
436 -</longdescription>
437 + </longdescription>
438 <upstream>
439 <remote-id type="github">sgothel/gluegen</remote-id>
440 </upstream>
441
442 diff --git a/dev-java/htsjdk/metadata.xml b/dev-java/htsjdk/metadata.xml
443 index 6c001f352..feb7e6155 100644
444 --- a/dev-java/htsjdk/metadata.xml
445 +++ b/dev-java/htsjdk/metadata.xml
446 @@ -10,7 +10,6 @@
447 <name>Gentoo Biology Project</name>
448 </maintainer>
449 <upstream>
450 - <remote-id type="sourceforge">picard</remote-id>
451 <remote-id type="github">samtools/htsjdk</remote-id>
452 </upstream>
453 </pkgmetadata>
454
455 diff --git a/dev-java/jeuclid-core/metadata.xml b/dev-java/jeuclid-core/metadata.xml
456 index 5e60bad07..5e72e0411 100644
457 --- a/dev-java/jeuclid-core/metadata.xml
458 +++ b/dev-java/jeuclid-core/metadata.xml
459 @@ -1,4 +1,4 @@
460 -<?xml version="1.0" encoding="UTF-8"?>
461 +<?xml version='1.0' encoding='UTF-8'?>
462 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
463 <pkgmetadata>
464 <maintainer type="project">
465 @@ -14,7 +14,7 @@
466 * A component for Apache Cocoon
467 This package contains the basic JEuclid rendering and document
468 handling classes.
469 -</longdescription>
470 + </longdescription>
471 <upstream>
472 <remote-id type="sourceforge">jeuclid</remote-id>
473 </upstream>
474
475 diff --git a/dev-java/jogl/metadata.xml b/dev-java/jogl/metadata.xml
476 index 6a8c7046c..88a073443 100644
477 --- a/dev-java/jogl/metadata.xml
478 +++ b/dev-java/jogl/metadata.xml
479 @@ -1,4 +1,4 @@
480 -<?xml version="1.0" encoding="UTF-8"?>
481 +<?xml version='1.0' encoding='UTF-8'?>
482 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
483 <pkgmetadata>
484 <maintainer type="project">
485 @@ -8,7 +8,7 @@
486 <longdescription lang="en">
487 JOGL provides Java with a Binding for the OpenGL® API (JSR-231), and is designed
488 to provide hardware-supported 3D graphics to applications written in Java.
489 -</longdescription>
490 + </longdescription>
491 <use>
492 <flag name="cg">Enable NVidia Cg binding.</flag>
493 </use>
494
495 diff --git a/dev-lang/conceptual/metadata.xml b/dev-lang/conceptual/metadata.xml
496 index bf09c654c..9766ecb5d 100644
497 --- a/dev-lang/conceptual/metadata.xml
498 +++ b/dev-lang/conceptual/metadata.xml
499 @@ -1,4 +1,4 @@
500 -<?xml version="1.0" encoding="UTF-8"?>
501 +<?xml version='1.0' encoding='UTF-8'?>
502 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
503 <pkgmetadata>
504 <maintainer type="person">
505
506 diff --git a/dev-lang/terra/metadata.xml b/dev-lang/terra/metadata.xml
507 index 7fa6fee0b..3b7daac27 100644
508 --- a/dev-lang/terra/metadata.xml
509 +++ b/dev-lang/terra/metadata.xml
510 @@ -1,4 +1,4 @@
511 -<?xml version="1.0" encoding="UTF-8"?>
512 +<?xml version='1.0' encoding='UTF-8'?>
513 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
514 <pkgmetadata>
515 <maintainer type="person">
516
517 diff --git a/dev-libs/boost-compute/metadata.xml b/dev-libs/boost-compute/metadata.xml
518 index f46139c8d..50b082f43 100644
519 --- a/dev-libs/boost-compute/metadata.xml
520 +++ b/dev-libs/boost-compute/metadata.xml
521 @@ -1,4 +1,4 @@
522 -<?xml version="1.0" encoding="UTF-8"?>
523 +<?xml version='1.0' encoding='UTF-8'?>
524 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
525 <pkgmetadata>
526 <maintainer type="person">
527
528 diff --git a/dev-libs/libcuda/metadata.xml b/dev-libs/libcuda/metadata.xml
529 index 1577ca222..137a77828 100644
530 --- a/dev-libs/libcuda/metadata.xml
531 +++ b/dev-libs/libcuda/metadata.xml
532 @@ -1,4 +1,4 @@
533 -<?xml version="1.0" encoding="UTF-8"?>
534 +<?xml version='1.0' encoding='UTF-8'?>
535 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
536 <pkgmetadata>
537 <maintainer type="person">
538
539 diff --git a/dev-libs/libgdev/metadata.xml b/dev-libs/libgdev/metadata.xml
540 index 1577ca222..137a77828 100644
541 --- a/dev-libs/libgdev/metadata.xml
542 +++ b/dev-libs/libgdev/metadata.xml
543 @@ -1,4 +1,4 @@
544 -<?xml version="1.0" encoding="UTF-8"?>
545 +<?xml version='1.0' encoding='UTF-8'?>
546 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
547 <pkgmetadata>
548 <maintainer type="person">
549
550 diff --git a/dev-libs/utf8proc/metadata.xml b/dev-libs/utf8proc/metadata.xml
551 index e254e530d..bea4b0d50 100644
552 --- a/dev-libs/utf8proc/metadata.xml
553 +++ b/dev-libs/utf8proc/metadata.xml
554 @@ -1,4 +1,4 @@
555 -<?xml version="1.0" encoding="UTF-8"?>
556 +<?xml version='1.0' encoding='UTF-8'?>
557 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
558 <pkgmetadata>
559 <maintainer type="project">
560 @@ -13,7 +13,7 @@
561 converts for example the characters “Hyphen” (U+2010), “Minus”
562 (U+2212) and “Hyphen-Minus” (U+002D, ASCII Minus) all into the ASCII
563 minus sign, to make them equal for comparisons.
564 -</longdescription>
565 + </longdescription>
566 <upstream>
567 <remote-id type="github">JuliaLang/utf8proc</remote-id>
568 </upstream>
569
570 diff --git a/dev-ml/lacaml/metadata.xml b/dev-ml/lacaml/metadata.xml
571 index e5248b9ad..d11df4158 100644
572 --- a/dev-ml/lacaml/metadata.xml
573 +++ b/dev-ml/lacaml/metadata.xml
574 @@ -1,4 +1,4 @@
575 -<?xml version="1.0" encoding="UTF-8"?>
576 +<?xml version='1.0' encoding='UTF-8'?>
577 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
578 <pkgmetadata>
579 <maintainer type="project">
580
581 diff --git a/dev-perl/BTLib/metadata.xml b/dev-perl/BTLib/metadata.xml
582 index c928da25a..aa38b1c12 100644
583 --- a/dev-perl/BTLib/metadata.xml
584 +++ b/dev-perl/BTLib/metadata.xml
585 @@ -1,4 +1,4 @@
586 -<?xml version="1.0" encoding="UTF-8"?>
587 +<?xml version='1.0' encoding='UTF-8'?>
588 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
589 <pkgmetadata>
590 <maintainer type="project">
591
592 diff --git a/dev-perl/opal-client/metadata.xml b/dev-perl/opal-client/metadata.xml
593 index 5f29f0643..1cfc2883a 100644
594 --- a/dev-perl/opal-client/metadata.xml
595 +++ b/dev-perl/opal-client/metadata.xml
596 @@ -1,4 +1,4 @@
597 -<?xml version="1.0" encoding="UTF-8"?>
598 +<?xml version='1.0' encoding='UTF-8'?>
599 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
600 <pkgmetadata>
601 <maintainer type="project">
602
603 diff --git a/dev-python/PeakUtils/metadata.xml b/dev-python/PeakUtils/metadata.xml
604 index a4c17d458..32d3251d5 100644
605 --- a/dev-python/PeakUtils/metadata.xml
606 +++ b/dev-python/PeakUtils/metadata.xml
607 @@ -13,7 +13,7 @@
608 increase the resolution of the peak detection.
609 </longdescription>
610 <upstream>
611 - <remote-id type="pypi">PeakUtils</remote-id>
612 <remote-id type="bitbucket">lucashnegri/peakutils</remote-id>
613 + <remote-id type="pypi">PeakUtils</remote-id>
614 </upstream>
615 </pkgmetadata>
616
617 diff --git a/dev-python/PyVISA-py/metadata.xml b/dev-python/PyVISA-py/metadata.xml
618 index be11d627d..26acc9198 100644
619 --- a/dev-python/PyVISA-py/metadata.xml
620 +++ b/dev-python/PyVISA-py/metadata.xml
621 @@ -1,4 +1,4 @@
622 -<?xml version="1.0" encoding="UTF-8"?>
623 +<?xml version='1.0' encoding='UTF-8'?>
624 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
625 <pkgmetadata>
626 <maintainer type="person">
627 @@ -14,7 +14,7 @@
628 Instrument Software Architecture" (VISA) in pure Python.
629 </longdescription>
630 <upstream>
631 - <remote-id type="pypi">PyVISA-py</remote-id>
632 <remote-id type="github">hgrecco/pyvisa-py</remote-id>
633 + <remote-id type="pypi">PyVISA-py</remote-id>
634 </upstream>
635 </pkgmetadata>
636
637 diff --git a/dev-python/PyVISA/metadata.xml b/dev-python/PyVISA/metadata.xml
638 index c7529e22f..19e1a51ca 100644
639 --- a/dev-python/PyVISA/metadata.xml
640 +++ b/dev-python/PyVISA/metadata.xml
641 @@ -1,4 +1,4 @@
642 -<?xml version="1.0" encoding="UTF-8"?>
643 +<?xml version='1.0' encoding='UTF-8'?>
644 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
645 <pkgmetadata>
646 <maintainer type="person">
647 @@ -15,7 +15,7 @@
648 test equipment via GPIB, RS232, Ethernet or USB.
649 </longdescription>
650 <upstream>
651 + <remote-id type="github">hgrecco/pyvisa-py</remote-id>
652 <remote-id type="pypi">PyVISA</remote-id>
653 - <remote-id type="github">hgrecco/pyvisa</remote-id>
654 </upstream>
655 </pkgmetadata>
656
657 diff --git a/dev-python/RecSQL/metadata.xml b/dev-python/RecSQL/metadata.xml
658 index c0ad26b50..355e9a516 100644
659 --- a/dev-python/RecSQL/metadata.xml
660 +++ b/dev-python/RecSQL/metadata.xml
661 @@ -1,4 +1,4 @@
662 -<?xml version="1.0" encoding="UTF-8"?>
663 +<?xml version='1.0' encoding='UTF-8'?>
664 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
665 <pkgmetadata>
666 <maintainer type="person">
667 @@ -9,7 +9,4 @@
668 <email>sci@g.o</email>
669 <name>Gentoo Science Project</name>
670 </maintainer>
671 - <upstream>
672 - <remote-id type="github">orbeckst/RecSQL</remote-id>
673 - </upstream>
674 </pkgmetadata>
675
676 diff --git a/dev-python/arrayfire-python/metadata.xml b/dev-python/arrayfire-python/metadata.xml
677 index 18b1016e2..12f0d0584 100644
678 --- a/dev-python/arrayfire-python/metadata.xml
679 +++ b/dev-python/arrayfire-python/metadata.xml
680 @@ -1,4 +1,4 @@
681 -<?xml version="1.0" encoding="UTF-8"?>
682 +<?xml version='1.0' encoding='UTF-8'?>
683 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
684 <pkgmetadata>
685 <maintainer type="person">
686
687 diff --git a/dev-python/astropy-helpers/metadata.xml b/dev-python/astropy-helpers/metadata.xml
688 index 9dffe2edc..68d40928a 100644
689 --- a/dev-python/astropy-helpers/metadata.xml
690 +++ b/dev-python/astropy-helpers/metadata.xml
691 @@ -1,4 +1,4 @@
692 -<?xml version="1.0" encoding="UTF-8"?>
693 +<?xml version='1.0' encoding='UTF-8'?>
694 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
695 <pkgmetadata>
696 <maintainer type="project">
697 @@ -10,7 +10,6 @@
698 that may be used by other projects.
699 </longdescription>
700 <upstream>
701 - <remote-id type="pypi">astropy-helpers</remote-id>
702 <remote-id type="github">astropy/astropy-helpers</remote-id>
703 </upstream>
704 </pkgmetadata>
705
706 diff --git a/dev-python/astroquery/metadata.xml b/dev-python/astroquery/metadata.xml
707 index 224276aae..84e169547 100644
708 --- a/dev-python/astroquery/metadata.xml
709 +++ b/dev-python/astroquery/metadata.xml
710 @@ -1,4 +1,4 @@
711 -<?xml version="1.0" encoding="UTF-8"?>
712 +<?xml version='1.0' encoding='UTF-8'?>
713 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
714 <pkgmetadata>
715 <maintainer type="project">
716 @@ -11,7 +11,6 @@
717 to support many services with a uniform API.
718 </longdescription>
719 <upstream>
720 - <remote-id type="pypi">astroquery</remote-id>
721 <remote-id type="github">astropy/astroquery</remote-id>
722 </upstream>
723 </pkgmetadata>
724
725 diff --git a/dev-python/brewer2mpl/metadata.xml b/dev-python/brewer2mpl/metadata.xml
726 index 4f2cd15bf..42211a68b 100644
727 --- a/dev-python/brewer2mpl/metadata.xml
728 +++ b/dev-python/brewer2mpl/metadata.xml
729 @@ -1,4 +1,4 @@
730 -<?xml version="1.0" encoding="UTF-8"?>
731 +<?xml version='1.0' encoding='UTF-8'?>
732 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
733 <pkgmetadata>
734 <maintainer type="person">
735 @@ -16,7 +16,7 @@
736 ships with brewer2mpl so no internet connection is required.
737 </longdescription>
738 <upstream>
739 - <remote-id type="pypi">brewer2mpl</remote-id>
740 <remote-id type="github">jiffyclub/brewer2mpl</remote-id>
741 + <remote-id type="pypi">brewer2mpl</remote-id>
742 </upstream>
743 </pkgmetadata>
744
745 diff --git a/dev-python/ccdproc/metadata.xml b/dev-python/ccdproc/metadata.xml
746 index a254a5734..e634ec8d8 100644
747 --- a/dev-python/ccdproc/metadata.xml
748 +++ b/dev-python/ccdproc/metadata.xml
749 @@ -1,4 +1,4 @@
750 -<?xml version="1.0" encoding="UTF-8"?>
751 +<?xml version='1.0' encoding='UTF-8'?>
752 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
753 <pkgmetadata>
754 <maintainer type="project">
755 @@ -11,7 +11,6 @@
756 and bad pixel tracking through the reduction steps.
757 </longdescription>
758 <upstream>
759 - <remote-id type="pypi">ccdproc</remote-id>
760 <remote-id type="github">astropy/ccdproc</remote-id>
761 </upstream>
762 </pkgmetadata>
763
764 diff --git a/dev-python/coards/metadata.xml b/dev-python/coards/metadata.xml
765 index 34578d15d..77d8a36e7 100644
766 --- a/dev-python/coards/metadata.xml
767 +++ b/dev-python/coards/metadata.xml
768 @@ -1,4 +1,4 @@
769 -<?xml version="1.0" encoding="UTF-8"?>
770 +<?xml version='1.0' encoding='UTF-8'?>
771 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
772 <pkgmetadata>
773 <maintainer type="person">
774
775 diff --git a/dev-python/dijitso/metadata.xml b/dev-python/dijitso/metadata.xml
776 index 489293405..cb17acf08 100644
777 --- a/dev-python/dijitso/metadata.xml
778 +++ b/dev-python/dijitso/metadata.xml
779 @@ -1,4 +1,4 @@
780 -<?xml version="1.0" encoding="UTF-8"?>
781 +<?xml version='1.0' encoding='UTF-8'?>
782 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
783 <pkgmetadata>
784 <maintainer type="project">
785 @@ -12,7 +12,6 @@
786 library, and thus do not need wrapping in a nice Python interface.
787 </longdescription>
788 <upstream>
789 - <remote-id type="bitbucket">fenics-project/ffc</remote-id>
790 - <remote-id type="launchpad">ffc</remote-id>
791 + <remote-id type="bitbucket">fenics-project/dijitso</remote-id>
792 </upstream>
793 </pkgmetadata>
794
795 diff --git a/dev-python/dimensionful/metadata.xml b/dev-python/dimensionful/metadata.xml
796 index 310bd052e..c156f9144 100644
797 --- a/dev-python/dimensionful/metadata.xml
798 +++ b/dev-python/dimensionful/metadata.xml
799 @@ -1,4 +1,4 @@
800 -<?xml version="1.0" encoding="UTF-8"?>
801 +<?xml version='1.0' encoding='UTF-8'?>
802 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
803 <pkgmetadata>
804 <maintainer type="person">
805
806 diff --git a/dev-python/ffc/metadata.xml b/dev-python/ffc/metadata.xml
807 index c18ab8720..35bb1f59e 100644
808 --- a/dev-python/ffc/metadata.xml
809 +++ b/dev-python/ffc/metadata.xml
810 @@ -1,4 +1,4 @@
811 -<?xml version="1.0" encoding="UTF-8"?>
812 +<?xml version='1.0' encoding='UTF-8'?>
813 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
814 <pkgmetadata>
815 <maintainer type="project">
816 @@ -15,6 +15,5 @@
817 </longdescription>
818 <upstream>
819 <remote-id type="bitbucket">fenics-project/ffc</remote-id>
820 - <remote-id type="launchpad">ffc</remote-id>
821 </upstream>
822 </pkgmetadata>
823
824 diff --git a/dev-python/ffnet/metadata.xml b/dev-python/ffnet/metadata.xml
825 index 81dcc789e..84e07f038 100644
826 --- a/dev-python/ffnet/metadata.xml
827 +++ b/dev-python/ffnet/metadata.xml
828 @@ -13,7 +13,6 @@
829 <flag name="matplotlib">Use matplotlib for drawing</flag>
830 </use>
831 <upstream>
832 - <remote-id type="github">mrkwjc/ffnet</remote-id>
833 <remote-id type="pypi">ffnet</remote-id>
834 <remote-id type="sourceforge">ffnet</remote-id>
835 </upstream>
836
837 diff --git a/dev-python/ffnetui/metadata.xml b/dev-python/ffnetui/metadata.xml
838 index 50cd8d0c5..fe996f826 100644
839 --- a/dev-python/ffnetui/metadata.xml
840 +++ b/dev-python/ffnetui/metadata.xml
841 @@ -9,7 +9,6 @@
842 GUI for ffnet - feed forward neural network for python
843 </longdescription>
844 <upstream>
845 - <remote-id type="github">mrkwjc/ffnetui</remote-id>
846 <remote-id type="pypi">ffnetui</remote-id>
847 <remote-id type="sourceforge">ffnet</remote-id>
848 </upstream>
849
850 diff --git a/dev-python/fiat/metadata.xml b/dev-python/fiat/metadata.xml
851 index c28ae4e03..c3aad9140 100644
852 --- a/dev-python/fiat/metadata.xml
853 +++ b/dev-python/fiat/metadata.xml
854 @@ -1,4 +1,4 @@
855 -<?xml version="1.0" encoding="UTF-8"?>
856 +<?xml version='1.0' encoding='UTF-8'?>
857 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
858 <pkgmetadata>
859 <maintainer type="project">
860 @@ -17,6 +17,5 @@
861 </longdescription>
862 <upstream>
863 <remote-id type="bitbucket">fenics-project/fiat</remote-id>
864 - <remote-id type="launchpad">fiat</remote-id>
865 </upstream>
866 </pkgmetadata>
867
868 diff --git a/dev-python/gammapy/metadata.xml b/dev-python/gammapy/metadata.xml
869 index 413f49bd4..9ab0a8d12 100644
870 --- a/dev-python/gammapy/metadata.xml
871 +++ b/dev-python/gammapy/metadata.xml
872 @@ -1,4 +1,4 @@
873 -<?xml version="1.0" encoding="UTF-8"?>
874 +<?xml version='1.0' encoding='UTF-8'?>
875 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
876 <pkgmetadata>
877 <maintainer type="project">
878 @@ -11,7 +11,6 @@
879 H.E.S.S, and CTA in primarily Galactic plane survey studies.
880 </longdescription>
881 <upstream>
882 - <remote-id type="pypi">gammapy</remote-id>
883 <remote-id type="github">gammapy/gammapy</remote-id>
884 </upstream>
885 </pkgmetadata>
886
887 diff --git a/dev-python/hdf5storage/metadata.xml b/dev-python/hdf5storage/metadata.xml
888 index 320a9f946..8ce73fe8c 100644
889 --- a/dev-python/hdf5storage/metadata.xml
890 +++ b/dev-python/hdf5storage/metadata.xml
891 @@ -1,4 +1,4 @@
892 -<?xml version="1.0" encoding="UTF-8"?>
893 +<?xml version='1.0' encoding='UTF-8'?>
894 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
895 <pkgmetadata>
896 <maintainer type="person">
897 @@ -17,7 +17,7 @@
898 extension and some extra meta-data.
899 </longdescription>
900 <upstream>
901 - <remote-id type="pypi">hdf5storage</remote-id>
902 <remote-id type="github">frejanordsiek/hdf5storage</remote-id>
903 + <remote-id type="pypi">hdf5storage</remote-id>
904 </upstream>
905 </pkgmetadata>
906
907 diff --git a/dev-python/imageutils/metadata.xml b/dev-python/imageutils/metadata.xml
908 index 90af04221..8f422b20a 100644
909 --- a/dev-python/imageutils/metadata.xml
910 +++ b/dev-python/imageutils/metadata.xml
911 @@ -1,4 +1,4 @@
912 -<?xml version="1.0" encoding="UTF-8"?>
913 +<?xml version='1.0' encoding='UTF-8'?>
914 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
915 <pkgmetadata>
916 <maintainer type="project">
917 @@ -11,7 +11,6 @@
918 package before the 1.0 release.
919 </longdescription>
920 <upstream>
921 - <remote-id type="pypi">imageutils</remote-id>
922 <remote-id type="github">astropy/imageutils</remote-id>
923 </upstream>
924 </pkgmetadata>
925
926 diff --git a/dev-python/instant/metadata.xml b/dev-python/instant/metadata.xml
927 index b3c7ae99c..0aa8827a4 100644
928 --- a/dev-python/instant/metadata.xml
929 +++ b/dev-python/instant/metadata.xml
930 @@ -1,4 +1,4 @@
931 -<?xml version="1.0" encoding="UTF-8"?>
932 +<?xml version='1.0' encoding='UTF-8'?>
933 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
934 <pkgmetadata>
935 <maintainer type="project">
936 @@ -12,6 +12,5 @@
937 </longdescription>
938 <upstream>
939 <remote-id type="bitbucket">fenics-project/instant</remote-id>
940 - <remote-id type="launchpad">instant</remote-id>
941 </upstream>
942 </pkgmetadata>
943
944 diff --git a/dev-python/ipykernel/metadata.xml b/dev-python/ipykernel/metadata.xml
945 index 973783bf3..d87bc07db 100644
946 --- a/dev-python/ipykernel/metadata.xml
947 +++ b/dev-python/ipykernel/metadata.xml
948 @@ -1,4 +1,4 @@
949 -<?xml version="1.0" encoding="UTF-8"?>
950 +<?xml version='1.0' encoding='UTF-8'?>
951 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
952 <pkgmetadata>
953 <maintainer type="project">
954 @@ -9,7 +9,6 @@
955 This package provides the IPython kernel for Jupyter.
956 </longdescription>
957 <upstream>
958 - <remote-id type="pypi">ipykernel</remote-id>
959 <remote-id type="github">ipython/ipykernel</remote-id>
960 </upstream>
961 </pkgmetadata>
962
963 diff --git a/dev-python/ipyparallel/metadata.xml b/dev-python/ipyparallel/metadata.xml
964 index 47348926e..bd6c5c2e0 100644
965 --- a/dev-python/ipyparallel/metadata.xml
966 +++ b/dev-python/ipyparallel/metadata.xml
967 @@ -1,4 +1,4 @@
968 -<?xml version="1.0" encoding="UTF-8"?>
969 +<?xml version='1.0' encoding='UTF-8'?>
970 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
971 <pkgmetadata>
972 <maintainer type="project">
973 @@ -9,7 +9,4 @@
974 Interactive Parallel Computing with IPython.
975 ipyparallel is the new home of IPython.parallel.
976 </longdescription>
977 - <upstream>
978 - <remote-id type="pypi">ipyparallel</remote-id>
979 - </upstream>
980 </pkgmetadata>
981
982 diff --git a/dev-python/ipython_genutils/metadata.xml b/dev-python/ipython_genutils/metadata.xml
983 index c9deb0b09..52164c08d 100644
984 --- a/dev-python/ipython_genutils/metadata.xml
985 +++ b/dev-python/ipython_genutils/metadata.xml
986 @@ -1,4 +1,4 @@
987 -<?xml version="1.0" encoding="UTF-8"?>
988 +<?xml version='1.0' encoding='UTF-8'?>
989 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
990 <pkgmetadata>
991 <maintainer type="project">
992 @@ -12,7 +12,6 @@
993 go away. No packages outside IPython/Jupyter should depend on it.
994 </longdescription>
995 <upstream>
996 - <remote-id type="pypi">ipython_genutils</remote-id>
997 <remote-id type="github">ipython/ipython_genutils</remote-id>
998 </upstream>
999 </pkgmetadata>
1000
1001 diff --git a/dev-python/ipywidgets/metadata.xml b/dev-python/ipywidgets/metadata.xml
1002 index 8bc51992f..4495ebb74 100644
1003 --- a/dev-python/ipywidgets/metadata.xml
1004 +++ b/dev-python/ipywidgets/metadata.xml
1005 @@ -1,4 +1,4 @@
1006 -<?xml version="1.0" encoding="UTF-8"?>
1007 +<?xml version='1.0' encoding='UTF-8'?>
1008 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1009 <pkgmetadata>
1010 <maintainer type="project">
1011
1012 diff --git a/dev-python/jupyter_client/metadata.xml b/dev-python/jupyter_client/metadata.xml
1013 index 53a086c17..fbd1af5b5 100644
1014 --- a/dev-python/jupyter_client/metadata.xml
1015 +++ b/dev-python/jupyter_client/metadata.xml
1016 @@ -1,4 +1,4 @@
1017 -<?xml version="1.0" encoding="UTF-8"?>
1018 +<?xml version='1.0' encoding='UTF-8'?>
1019 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1020 <pkgmetadata>
1021 <maintainer type="project">
1022 @@ -11,7 +11,4 @@
1023 kernels. It also provides the jupyter kernelspec entrypoint for
1024 installing kernelspecs for use with Jupyter frontends.
1025 </longdescription>
1026 - <upstream>
1027 - <remote-id type="pypi">jupyter_client</remote-id>
1028 - </upstream>
1029 </pkgmetadata>
1030
1031 diff --git a/dev-python/jupyter_console/metadata.xml b/dev-python/jupyter_console/metadata.xml
1032 index 6fc0fef28..a2b19aeaf 100644
1033 --- a/dev-python/jupyter_console/metadata.xml
1034 +++ b/dev-python/jupyter_console/metadata.xml
1035 @@ -1,4 +1,4 @@
1036 -<?xml version="1.0" encoding="UTF-8"?>
1037 +<?xml version='1.0' encoding='UTF-8'?>
1038 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1039 <pkgmetadata>
1040 <maintainer type="project">
1041 @@ -9,7 +9,4 @@
1042 A terminal-based console frontend for Jupyter kernels.
1043 This code is based on the single-process IPython terminal.
1044 </longdescription>
1045 - <upstream>
1046 - <remote-id type="pypi">jupyter_console</remote-id>
1047 - </upstream>
1048 </pkgmetadata>
1049
1050 diff --git a/dev-python/jupyter_core/metadata.xml b/dev-python/jupyter_core/metadata.xml
1051 index 467bb37a5..88e71aa2c 100644
1052 --- a/dev-python/jupyter_core/metadata.xml
1053 +++ b/dev-python/jupyter_core/metadata.xml
1054 @@ -1,4 +1,4 @@
1055 -<?xml version="1.0" encoding="UTF-8"?>
1056 +<?xml version='1.0' encoding='UTF-8'?>
1057 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1058 <pkgmetadata>
1059 <maintainer type="project">
1060 @@ -10,7 +10,4 @@
1061 This package contains base application classes and configuration
1062 inhertited by other projects. It doesn't do much on its own.
1063 </longdescription>
1064 - <upstream>
1065 - <remote-id type="pypi">jupyter_core</remote-id>
1066 - </upstream>
1067 </pkgmetadata>
1068
1069 diff --git a/dev-python/matlab_wrapper/metadata.xml b/dev-python/matlab_wrapper/metadata.xml
1070 index bad1f381d..38df0353a 100644
1071 --- a/dev-python/matlab_wrapper/metadata.xml
1072 +++ b/dev-python/matlab_wrapper/metadata.xml
1073 @@ -1,4 +1,4 @@
1074 -<?xml version="1.0" encoding="UTF-8"?>
1075 +<?xml version='1.0' encoding='UTF-8'?>
1076 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1077 <pkgmetadata>
1078 <maintainer type="person">
1079 @@ -17,7 +17,7 @@
1080 as a regular Python module.
1081 </longdescription>
1082 <upstream>
1083 - <remote-id type="pypi">matlab_wrapper</remote-id>
1084 <remote-id type="github">mrkrd/matlab_wrapper</remote-id>
1085 + <remote-id type="pypi">matlab_wrapper</remote-id>
1086 </upstream>
1087 </pkgmetadata>
1088
1089 diff --git a/dev-python/matplotlib-venn/metadata.xml b/dev-python/matplotlib-venn/metadata.xml
1090 index 8401ce8b5..cae4c83f9 100644
1091 --- a/dev-python/matplotlib-venn/metadata.xml
1092 +++ b/dev-python/matplotlib-venn/metadata.xml
1093 @@ -6,7 +6,6 @@
1094 <name>Gentoo Science Project</name>
1095 </maintainer>
1096 <upstream>
1097 - <remote-id type="github">matplotlib-venn</remote-id>
1098 <remote-id type="pypi">matplotlib-venn</remote-id>
1099 </upstream>
1100 </pkgmetadata>
1101
1102 diff --git a/dev-python/matplotlib2tikz/metadata.xml b/dev-python/matplotlib2tikz/metadata.xml
1103 index 9c08eac01..9dc28cbe0 100644
1104 --- a/dev-python/matplotlib2tikz/metadata.xml
1105 +++ b/dev-python/matplotlib2tikz/metadata.xml
1106 @@ -1,4 +1,4 @@
1107 -<?xml version="1.0" encoding="UTF-8"?>
1108 +<?xml version='1.0' encoding='UTF-8'?>
1109 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1110 <pkgmetadata>
1111 <maintainer type="person">
1112 @@ -12,6 +12,5 @@
1113 <longdescription>matplotlib2tikz is a Python tool for converting matplotlib figures into PGFPlots (TikZ) figures like for native inclusion into LaTeX documents. The output of matplotlib2tikz is in PGFPlots, a LaTeX library that sits on top of TikZ and describes graphs in terms of axes, data etc. Consequently, the output of matplotlib2tikz retains more information, can be more easily understood, and is more easily editable than raw TikZ output.</longdescription>
1114 <upstream>
1115 <remote-id type="github">nschloe/matplotlib2tikz</remote-id>
1116 - <remote-id type="pypi">matplotlib2tikz</remote-id>
1117 </upstream>
1118 </pkgmetadata>
1119
1120 diff --git a/dev-python/matrix2latex/metadata.xml b/dev-python/matrix2latex/metadata.xml
1121 index b8ecd8dc9..e8cce6c4b 100644
1122 --- a/dev-python/matrix2latex/metadata.xml
1123 +++ b/dev-python/matrix2latex/metadata.xml
1124 @@ -1,4 +1,4 @@
1125 -<?xml version="1.0" encoding="UTF-8"?>
1126 +<?xml version='1.0' encoding='UTF-8'?>
1127 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1128 <pkgmetadata>
1129 <maintainer type="project">
1130 @@ -11,6 +11,6 @@
1131 LATeX documents and compile them.
1132 </longdescription>
1133 <upstream>
1134 - <remote-id type="github">matrix2latex</remote-id>
1135 + <remote-id type="github">TheChymera/matrix2latex</remote-id>
1136 </upstream>
1137 </pkgmetadata>
1138
1139 diff --git a/dev-python/meshpy/metadata.xml b/dev-python/meshpy/metadata.xml
1140 index d5be6ad0b..18f3e3730 100644
1141 --- a/dev-python/meshpy/metadata.xml
1142 +++ b/dev-python/meshpy/metadata.xml
1143 @@ -1,4 +1,4 @@
1144 -<?xml version="1.0" encoding="UTF-8"?>
1145 +<?xml version='1.0' encoding='UTF-8'?>
1146 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1147 <pkgmetadata>
1148 <maintainer type="project">
1149 @@ -12,7 +12,7 @@ also have many other applications ranging from computer graphics to robotics.
1150 In order to generate these 2D and 3D meshes, MeshPy provides Python interfaces
1151 to two well-regarded mesh generators, Triangle by J. Shewchuk and TetGen by
1152 Hang Si. Both are included in the package in slightly modified versions.
1153 -</longdescription>
1154 + </longdescription>
1155 <upstream>
1156 <remote-id type="pypi">MeshPy</remote-id>
1157 </upstream>
1158
1159 diff --git a/dev-python/metakernel/metadata.xml b/dev-python/metakernel/metadata.xml
1160 index 98f5e4874..e0c68c929 100644
1161 --- a/dev-python/metakernel/metadata.xml
1162 +++ b/dev-python/metakernel/metadata.xml
1163 @@ -1,4 +1,4 @@
1164 -<?xml version="1.0" encoding="UTF-8"?>
1165 +<?xml version='1.0' encoding='UTF-8'?>
1166 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1167 <pkgmetadata>
1168 <maintainer type="project">
1169 @@ -11,7 +11,7 @@
1170 parallel and distributed processing, downloads, and much more).
1171 </longdescription>
1172 <upstream>
1173 - <remote-id type="pypi">metakernel</remote-id>
1174 <remote-id type="github">Calysto/metakernel</remote-id>
1175 + <remote-id type="pypi">metakernel</remote-id>
1176 </upstream>
1177 </pkgmetadata>
1178
1179 diff --git a/dev-python/metakernel_bash/metadata.xml b/dev-python/metakernel_bash/metadata.xml
1180 index 105ab469f..286d590e3 100644
1181 --- a/dev-python/metakernel_bash/metadata.xml
1182 +++ b/dev-python/metakernel_bash/metadata.xml
1183 @@ -1,4 +1,4 @@
1184 -<?xml version="1.0" encoding="UTF-8"?>
1185 +<?xml version='1.0' encoding='UTF-8'?>
1186 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1187 <pkgmetadata>
1188 <maintainer type="project">
1189 @@ -9,7 +9,7 @@
1190 A Bash kernel for Jupyter/IPython, based on MetaKernel.
1191 </longdescription>
1192 <upstream>
1193 - <remote-id type="pypi">metakernel_bash</remote-id>
1194 <remote-id type="github">Calysto/metakernel</remote-id>
1195 + <remote-id type="pypi">metakernel_bash</remote-id>
1196 </upstream>
1197 </pkgmetadata>
1198
1199 diff --git a/dev-python/metakernel_python/metadata.xml b/dev-python/metakernel_python/metadata.xml
1200 index 2aed17634..aaf6cb9d7 100644
1201 --- a/dev-python/metakernel_python/metadata.xml
1202 +++ b/dev-python/metakernel_python/metadata.xml
1203 @@ -1,4 +1,4 @@
1204 -<?xml version="1.0" encoding="UTF-8"?>
1205 +<?xml version='1.0' encoding='UTF-8'?>
1206 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1207 <pkgmetadata>
1208 <maintainer type="project">
1209 @@ -9,7 +9,7 @@
1210 A Python kernel for Jupyter/IPython, based on MetaKernel.
1211 </longdescription>
1212 <upstream>
1213 - <remote-id type="pypi">metakernel_python</remote-id>
1214 <remote-id type="github">Calysto/metakernel</remote-id>
1215 + <remote-id type="pypi">metakernel_python</remote-id>
1216 </upstream>
1217 </pkgmetadata>
1218
1219 diff --git a/dev-python/nbconvert/metadata.xml b/dev-python/nbconvert/metadata.xml
1220 index 10cd4105e..d9cbf5baa 100644
1221 --- a/dev-python/nbconvert/metadata.xml
1222 +++ b/dev-python/nbconvert/metadata.xml
1223 @@ -1,4 +1,4 @@
1224 -<?xml version="1.0" encoding="UTF-8"?>
1225 +<?xml version='1.0' encoding='UTF-8'?>
1226 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1227 <pkgmetadata>
1228 <maintainer type="project">
1229 @@ -9,7 +9,4 @@
1230 Jupyter NBConvert converts Jupyter notebooks to various other
1231 formats via Jinja templates.
1232 </longdescription>
1233 - <upstream>
1234 - <remote-id type="pypi">nbconvert</remote-id>
1235 - </upstream>
1236 </pkgmetadata>
1237
1238 diff --git a/dev-python/nbdime/metadata.xml b/dev-python/nbdime/metadata.xml
1239 index b2a229dc3..5a8712352 100644
1240 --- a/dev-python/nbdime/metadata.xml
1241 +++ b/dev-python/nbdime/metadata.xml
1242 @@ -1,4 +1,4 @@
1243 -<?xml version="1.0" encoding="UTF-8"?>
1244 +<?xml version='1.0' encoding='UTF-8'?>
1245 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1246 <pkgmetadata>
1247 <maintainer type="person">
1248 @@ -12,13 +12,9 @@
1249 <longdescription>
1250 nbdime provides tools for diffing and merging of Jupyter Notebooks.
1251 </longdescription>
1252 - <upstream>
1253 - <remote-id type="github">jupyter/nbdime</remote-id>
1254 - <remote-id type="pypi">nbdime</remote-id>
1255 - </upstream>
1256 <use>
1257 <flag name="webtools">
1258 Install web-based diff and merge tools.
1259 </flag>
1260 -</use>
1261 + </use>
1262 </pkgmetadata>
1263
1264 diff --git a/dev-python/nbformat/metadata.xml b/dev-python/nbformat/metadata.xml
1265 index 6bd91dea5..4788ba53f 100644
1266 --- a/dev-python/nbformat/metadata.xml
1267 +++ b/dev-python/nbformat/metadata.xml
1268 @@ -1,4 +1,4 @@
1269 -<?xml version="1.0" encoding="UTF-8"?>
1270 +<?xml version='1.0' encoding='UTF-8'?>
1271 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1272 <pkgmetadata>
1273 <maintainer type="project">
1274 @@ -11,7 +11,4 @@
1275 notebooks. There is also a JSON schema for notebook format
1276 versions &gt;= 3.
1277 </longdescription>
1278 - <upstream>
1279 - <remote-id type="pypi">nbformat</remote-id>
1280 - </upstream>
1281 </pkgmetadata>
1282
1283 diff --git a/dev-python/newrelic/metadata.xml b/dev-python/newrelic/metadata.xml
1284 index 442e04047..4a7c9adc5 100644
1285 --- a/dev-python/newrelic/metadata.xml
1286 +++ b/dev-python/newrelic/metadata.xml
1287 @@ -1,4 +1,4 @@
1288 -<?xml version="1.0" encoding="UTF-8"?>
1289 +<?xml version='1.0' encoding='UTF-8'?>
1290 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1291 <pkgmetadata>
1292 <maintainer type="project">
1293
1294 diff --git a/dev-python/notebook/metadata.xml b/dev-python/notebook/metadata.xml
1295 index 2751ca0be..8161170dc 100644
1296 --- a/dev-python/notebook/metadata.xml
1297 +++ b/dev-python/notebook/metadata.xml
1298 @@ -1,4 +1,4 @@
1299 -<?xml version="1.0" encoding="UTF-8"?>
1300 +<?xml version='1.0' encoding='UTF-8'?>
1301 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1302 <pkgmetadata>
1303 <maintainer type="project">
1304
1305 diff --git a/dev-python/nvidia-ml-py/metadata.xml b/dev-python/nvidia-ml-py/metadata.xml
1306 index 5e6d9d85c..e18e888d9 100644
1307 --- a/dev-python/nvidia-ml-py/metadata.xml
1308 +++ b/dev-python/nvidia-ml-py/metadata.xml
1309 @@ -1,4 +1,4 @@
1310 -<?xml version="1.0" encoding="UTF-8"?>
1311 +<?xml version='1.0' encoding='UTF-8'?>
1312 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1313 <pkgmetadata>
1314 <maintainer type="person">
1315
1316 diff --git a/dev-python/omniorbpy/metadata.xml b/dev-python/omniorbpy/metadata.xml
1317 index f3506b413..d47182280 100644
1318 --- a/dev-python/omniorbpy/metadata.xml
1319 +++ b/dev-python/omniorbpy/metadata.xml
1320 @@ -1,4 +1,4 @@
1321 -<?xml version="1.0" encoding="UTF-8"?>
1322 +<?xml version='1.0' encoding='UTF-8'?>
1323 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1324 <pkgmetadata>
1325 <maintainer type="project">
1326
1327 diff --git a/dev-python/opal-client/metadata.xml b/dev-python/opal-client/metadata.xml
1328 index 28e2fc558..7aac60648 100644
1329 --- a/dev-python/opal-client/metadata.xml
1330 +++ b/dev-python/opal-client/metadata.xml
1331 @@ -1,4 +1,4 @@
1332 -<?xml version="1.0" encoding="UTF-8"?>
1333 +<?xml version='1.0' encoding='UTF-8'?>
1334 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1335 <pkgmetadata>
1336 <maintainer type="project">
1337
1338 diff --git a/dev-python/pamela/metadata.xml b/dev-python/pamela/metadata.xml
1339 index d1dc0c28b..e55257c75 100644
1340 --- a/dev-python/pamela/metadata.xml
1341 +++ b/dev-python/pamela/metadata.xml
1342 @@ -1,4 +1,4 @@
1343 -<?xml version="1.0" encoding="UTF-8"?>
1344 +<?xml version='1.0' encoding='UTF-8'?>
1345 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1346 <pkgmetadata>
1347 <maintainer type="project">
1348 @@ -10,7 +10,7 @@
1349 written in pure Python (using ctypes).
1350 </longdescription>
1351 <upstream>
1352 - <remote-id type="pypi">pamela</remote-id>
1353 <remote-id type="github">minrk/pamela</remote-id>
1354 + <remote-id type="pypi">pamela</remote-id>
1355 </upstream>
1356 </pkgmetadata>
1357
1358 diff --git a/dev-python/photutils/metadata.xml b/dev-python/photutils/metadata.xml
1359 index b5ab4d774..00ee2183b 100644
1360 --- a/dev-python/photutils/metadata.xml
1361 +++ b/dev-python/photutils/metadata.xml
1362 @@ -1,4 +1,4 @@
1363 -<?xml version="1.0" encoding="UTF-8"?>
1364 +<?xml version='1.0' encoding='UTF-8'?>
1365 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1366 <pkgmetadata>
1367 <maintainer type="project">
1368 @@ -11,7 +11,6 @@
1369 centroid and shape parameters, and performing photometry.
1370 </longdescription>
1371 <upstream>
1372 - <remote-id type="pypi">photutils</remote-id>
1373 <remote-id type="github">astropy/photutils</remote-id>
1374 </upstream>
1375 </pkgmetadata>
1376
1377 diff --git a/dev-python/pickleshare/metadata.xml b/dev-python/pickleshare/metadata.xml
1378 index 5d8abb4a3..967d08889 100644
1379 --- a/dev-python/pickleshare/metadata.xml
1380 +++ b/dev-python/pickleshare/metadata.xml
1381 @@ -1,4 +1,4 @@
1382 -<?xml version="1.0" encoding="UTF-8"?>
1383 +<?xml version='1.0' encoding='UTF-8'?>
1384 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1385 <pkgmetadata>
1386 <maintainer type="project">
1387 @@ -15,7 +15,6 @@
1388 governed by PickleShare.
1389 </longdescription>
1390 <upstream>
1391 - <remote-id type="pypi">pickleshare</remote-id>
1392 <remote-id type="github">pickleshare/pickleshare</remote-id>
1393 </upstream>
1394 </pkgmetadata>
1395
1396 diff --git a/dev-python/prettyplotlib/metadata.xml b/dev-python/prettyplotlib/metadata.xml
1397 index 752a7a1ad..615f1b6db 100644
1398 --- a/dev-python/prettyplotlib/metadata.xml
1399 +++ b/dev-python/prettyplotlib/metadata.xml
1400 @@ -1,4 +1,4 @@
1401 -<?xml version="1.0" encoding="UTF-8"?>
1402 +<?xml version='1.0' encoding='UTF-8'?>
1403 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1404 <pkgmetadata>
1405 <maintainer type="person">
1406 @@ -7,7 +7,7 @@
1407 </maintainer>
1408 <longdescription>
1409 Python matplotlib-enhancer library which painlessly creates
1410 - beautiful default matplotlib plots.
1411 + beautiful default matplotlib plots.
1412 </longdescription>
1413 <upstream>
1414 <remote-id type="pypi">prettyplotlib</remote-id>
1415
1416 diff --git a/dev-python/prov/metadata.xml b/dev-python/prov/metadata.xml
1417 index df7ac6500..1b4b150fb 100644
1418 --- a/dev-python/prov/metadata.xml
1419 +++ b/dev-python/prov/metadata.xml
1420 @@ -1,4 +1,4 @@
1421 -<?xml version="1.0" encoding="UTF-8"?>
1422 +<?xml version='1.0' encoding='UTF-8'?>
1423 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1424 <pkgmetadata>
1425 <maintainer type="person">
1426
1427 diff --git a/dev-python/ptyprocess/metadata.xml b/dev-python/ptyprocess/metadata.xml
1428 index 3ff841fbb..ea8694355 100644
1429 --- a/dev-python/ptyprocess/metadata.xml
1430 +++ b/dev-python/ptyprocess/metadata.xml
1431 @@ -1,4 +1,4 @@
1432 -<?xml version="1.0" encoding="UTF-8"?>
1433 +<?xml version='1.0' encoding='UTF-8'?>
1434 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1435 <pkgmetadata>
1436 <maintainer type="project">
1437
1438 diff --git a/dev-python/pydotplus/metadata.xml b/dev-python/pydotplus/metadata.xml
1439 index 3e56e273a..eb80ef0cd 100644
1440 --- a/dev-python/pydotplus/metadata.xml
1441 +++ b/dev-python/pydotplus/metadata.xml
1442 @@ -1,4 +1,4 @@
1443 -<?xml version="1.0" encoding="UTF-8"?>
1444 +<?xml version='1.0' encoding='UTF-8'?>
1445 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1446 <pkgmetadata>
1447 <maintainer type="person">
1448
1449 diff --git a/dev-python/pyfftw/metadata.xml b/dev-python/pyfftw/metadata.xml
1450 index 039274847..174e4dbdc 100644
1451 --- a/dev-python/pyfftw/metadata.xml
1452 +++ b/dev-python/pyfftw/metadata.xml
1453 @@ -1,4 +1,4 @@
1454 -<?xml version="1.0" encoding="UTF-8"?>
1455 +<?xml version='1.0' encoding='UTF-8'?>
1456 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1457 <pkgmetadata>
1458 <maintainer type="person">
1459
1460 diff --git a/dev-python/pyhdf/metadata.xml b/dev-python/pyhdf/metadata.xml
1461 index bc7e4eaea..d38ca85ff 100644
1462 --- a/dev-python/pyhdf/metadata.xml
1463 +++ b/dev-python/pyhdf/metadata.xml
1464 @@ -1,4 +1,4 @@
1465 -<?xml version="1.0" encoding="UTF-8"?>
1466 +<?xml version='1.0' encoding='UTF-8'?>
1467 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1468 <pkgmetadata>
1469 <maintainer type="person">
1470
1471 diff --git a/dev-python/pylibconfig2/metadata.xml b/dev-python/pylibconfig2/metadata.xml
1472 index ddcf65796..e260b7fe1 100644
1473 --- a/dev-python/pylibconfig2/metadata.xml
1474 +++ b/dev-python/pylibconfig2/metadata.xml
1475 @@ -1,4 +1,4 @@
1476 -<?xml version="1.0" encoding="UTF-8"?>
1477 +<?xml version='1.0' encoding='UTF-8'?>
1478 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1479 <pkgmetadata>
1480 <maintainer type="person">
1481 @@ -19,7 +19,7 @@
1482 only, and represented as a string automatically.
1483 </longdescription>
1484 <upstream>
1485 - <remote-id type="pypi">pylibconfig2</remote-id>
1486 <remote-id type="github">heinzK1X/pylibconfig2</remote-id>
1487 + <remote-id type="pypi">pylibconfig2</remote-id>
1488 </upstream>
1489 </pkgmetadata>
1490
1491 diff --git a/dev-python/pynomo/metadata.xml b/dev-python/pynomo/metadata.xml
1492 index 0ece82028..f365ddf66 100644
1493 --- a/dev-python/pynomo/metadata.xml
1494 +++ b/dev-python/pynomo/metadata.xml
1495 @@ -1,4 +1,4 @@
1496 -<?xml version="1.0" encoding="UTF-8"?>
1497 +<?xml version='1.0' encoding='UTF-8'?>
1498 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1499 <pkgmetadata>
1500 <maintainer type="person">
1501 @@ -8,7 +8,7 @@
1502 Pynomo is a program to create (pdf) nomographs
1503 (nomograms) using Python interpreter. A nomograph (nomogram) is a
1504 graphical solution to an equation.
1505 -</longdescription>
1506 + </longdescription>
1507 <upstream>
1508 <remote-id type="sourceforge">pynomo</remote-id>
1509 </upstream>
1510
1511 diff --git a/dev-python/pysolar/metadata.xml b/dev-python/pysolar/metadata.xml
1512 index a7996892d..fe8be1b12 100644
1513 --- a/dev-python/pysolar/metadata.xml
1514 +++ b/dev-python/pysolar/metadata.xml
1515 @@ -1,4 +1,4 @@
1516 -<?xml version="1.0" encoding="UTF-8"?>
1517 +<?xml version='1.0' encoding='UTF-8'?>
1518 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1519 <pkgmetadata>
1520 <maintainer type="project">
1521 @@ -11,9 +11,8 @@
1522 extremely precise ephemeris calculations, and more. Pysolar can
1523 calculate the location of the sun or the shading percentage as a
1524 function of time for a row of 2-axis tracked panels.
1525 -</longdescription>
1526 + </longdescription>
1527 <upstream>
1528 - <remote-id type="pypi">Pysolar</remote-id>
1529 <remote-id type="github">pingswept/pysolar</remote-id>
1530 </upstream>
1531 </pkgmetadata>
1532
1533 diff --git a/dev-python/python-ivi/metadata.xml b/dev-python/python-ivi/metadata.xml
1534 index 9d59c0382..630240a1d 100644
1535 --- a/dev-python/python-ivi/metadata.xml
1536 +++ b/dev-python/python-ivi/metadata.xml
1537 @@ -1,4 +1,4 @@
1538 -<?xml version="1.0" encoding="UTF-8"?>
1539 +<?xml version='1.0' encoding='UTF-8'?>
1540 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1541 <pkgmetadata>
1542 <maintainer type="person">
1543
1544 diff --git a/dev-python/python-vxi11/metadata.xml b/dev-python/python-vxi11/metadata.xml
1545 index 095fd5346..72510adc7 100644
1546 --- a/dev-python/python-vxi11/metadata.xml
1547 +++ b/dev-python/python-vxi11/metadata.xml
1548 @@ -1,4 +1,4 @@
1549 -<?xml version="1.0" encoding="UTF-8"?>
1550 +<?xml version='1.0' encoding='UTF-8'?>
1551 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1552 <pkgmetadata>
1553 <maintainer type="person">
1554
1555 diff --git a/dev-python/pythoncgns/metadata.xml b/dev-python/pythoncgns/metadata.xml
1556 index 116c8c0b3..35f35f0b7 100644
1557 --- a/dev-python/pythoncgns/metadata.xml
1558 +++ b/dev-python/pythoncgns/metadata.xml
1559 @@ -1,4 +1,4 @@
1560 -<?xml version="1.0" encoding="UTF-8"?>
1561 +<?xml version='1.0' encoding='UTF-8'?>
1562 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1563 <pkgmetadata>
1564 <maintainer type="project">
1565
1566 diff --git a/dev-python/pythonqt/metadata.xml b/dev-python/pythonqt/metadata.xml
1567 index e44f1d0fe..364efbdc3 100644
1568 --- a/dev-python/pythonqt/metadata.xml
1569 +++ b/dev-python/pythonqt/metadata.xml
1570 @@ -1,4 +1,4 @@
1571 -<?xml version="1.0" encoding="UTF-8"?>
1572 +<?xml version='1.0' encoding='UTF-8'?>
1573 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1574 <pkgmetadata>
1575 <maintainer type="project">
1576
1577 diff --git a/dev-python/qtconsole/metadata.xml b/dev-python/qtconsole/metadata.xml
1578 index 83b712f7e..93199c605 100644
1579 --- a/dev-python/qtconsole/metadata.xml
1580 +++ b/dev-python/qtconsole/metadata.xml
1581 @@ -1,4 +1,4 @@
1582 -<?xml version="1.0" encoding="UTF-8"?>
1583 +<?xml version='1.0' encoding='UTF-8'?>
1584 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1585 <pkgmetadata>
1586 <maintainer type="project">
1587 @@ -9,7 +9,4 @@
1588 A rich Qt-based console for working with Jupyter kernels,
1589 supporting rich media output, session export, and more.
1590 </longdescription>
1591 - <upstream>
1592 - <remote-id type="pypi">qtconsole</remote-id>
1593 - </upstream>
1594 </pkgmetadata>
1595
1596 diff --git a/dev-python/snakemake/metadata.xml b/dev-python/snakemake/metadata.xml
1597 index 9fb8f07d6..a21e3edfd 100644
1598 --- a/dev-python/snakemake/metadata.xml
1599 +++ b/dev-python/snakemake/metadata.xml
1600 @@ -10,7 +10,6 @@
1601 <name>Python</name>
1602 </maintainer>
1603 <upstream>
1604 - <remote-id type="github">dev-python/snakemake</remote-id>
1605 <remote-id type="bitbucket">johanneskoester/snakemake</remote-id>
1606 <remote-id type="pypi">snakemake</remote-id>
1607 </upstream>
1608
1609 diff --git a/dev-python/specutils/metadata.xml b/dev-python/specutils/metadata.xml
1610 index 15cc63844..6e70cb363 100644
1611 --- a/dev-python/specutils/metadata.xml
1612 +++ b/dev-python/specutils/metadata.xml
1613 @@ -1,4 +1,4 @@
1614 -<?xml version="1.0" encoding="UTF-8"?>
1615 +<?xml version='1.0' encoding='UTF-8'?>
1616 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1617 <pkgmetadata>
1618 <maintainer type="project">
1619 @@ -11,7 +11,6 @@
1620 into a class with special handling of 1D spectra.
1621 </longdescription>
1622 <upstream>
1623 - <remote-id type="pypi">specutils</remote-id>
1624 <remote-id type="github">astropy/specutils</remote-id>
1625 </upstream>
1626 </pkgmetadata>
1627
1628 diff --git a/dev-python/symengine/metadata.xml b/dev-python/symengine/metadata.xml
1629 index 00019a052..ffc78518d 100644
1630 --- a/dev-python/symengine/metadata.xml
1631 +++ b/dev-python/symengine/metadata.xml
1632 @@ -1,4 +1,4 @@
1633 -<?xml version="1.0" encoding="UTF-8"?>
1634 +<?xml version='1.0' encoding='UTF-8'?>
1635 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1636 <pkgmetadata>
1637 <maintainer type="person">
1638
1639 diff --git a/dev-python/testpath/metadata.xml b/dev-python/testpath/metadata.xml
1640 index cba9cbf64..7183f762d 100644
1641 --- a/dev-python/testpath/metadata.xml
1642 +++ b/dev-python/testpath/metadata.xml
1643 @@ -1,4 +1,4 @@
1644 -<?xml version="1.0" encoding="UTF-8"?>
1645 +<?xml version='1.0' encoding='UTF-8'?>
1646 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1647 <pkgmetadata>
1648 <maintainer type="project">
1649 @@ -11,7 +11,4 @@
1650 filesystem, and tools for mocking system commands and recording
1651 calls to those.
1652 </longdescription>
1653 - <upstream>
1654 - <remote-id type="github">jupyter/testpath</remote-id>
1655 - </upstream>
1656 </pkgmetadata>
1657
1658 diff --git a/dev-python/traitlets/metadata.xml b/dev-python/traitlets/metadata.xml
1659 index fa50e6184..a1cab5d48 100644
1660 --- a/dev-python/traitlets/metadata.xml
1661 +++ b/dev-python/traitlets/metadata.xml
1662 @@ -1,4 +1,4 @@
1663 -<?xml version="1.0" encoding="UTF-8"?>
1664 +<?xml version='1.0' encoding='UTF-8'?>
1665 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1666 <pkgmetadata>
1667 <maintainer type="project">
1668 @@ -11,7 +11,6 @@
1669 the config system of IPython and Jupyter.
1670 </longdescription>
1671 <upstream>
1672 - <remote-id type="pypi">traitlets</remote-id>
1673 <remote-id type="github">ipython/traitlets</remote-id>
1674 </upstream>
1675 </pkgmetadata>
1676
1677 diff --git a/dev-python/ufl/metadata.xml b/dev-python/ufl/metadata.xml
1678 index af0327cec..480a531aa 100644
1679 --- a/dev-python/ufl/metadata.xml
1680 +++ b/dev-python/ufl/metadata.xml
1681 @@ -1,4 +1,4 @@
1682 -<?xml version="1.0" encoding="UTF-8"?>
1683 +<?xml version='1.0' encoding='UTF-8'?>
1684 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1685 <pkgmetadata>
1686 <maintainer type="project">
1687 @@ -14,6 +14,5 @@
1688 </longdescription>
1689 <upstream>
1690 <remote-id type="bitbucket">fenics-project/ufl</remote-id>
1691 - <remote-id type="launchpad">ufl</remote-id>
1692 </upstream>
1693 </pkgmetadata>
1694
1695 diff --git a/dev-python/viper/metadata.xml b/dev-python/viper/metadata.xml
1696 index 430a78511..18c1efff5 100644
1697 --- a/dev-python/viper/metadata.xml
1698 +++ b/dev-python/viper/metadata.xml
1699 @@ -1,4 +1,4 @@
1700 -<?xml version="1.0" encoding="UTF-8"?>
1701 +<?xml version='1.0' encoding='UTF-8'?>
1702 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1703 <pkgmetadata>
1704 <maintainer type="project">
1705
1706 diff --git a/dev-python/widgetsnbextension/metadata.xml b/dev-python/widgetsnbextension/metadata.xml
1707 index 9f0544f5e..56daebe56 100644
1708 --- a/dev-python/widgetsnbextension/metadata.xml
1709 +++ b/dev-python/widgetsnbextension/metadata.xml
1710 @@ -1,4 +1,4 @@
1711 -<?xml version="1.0" encoding="UTF-8"?>
1712 +<?xml version='1.0' encoding='UTF-8'?>
1713 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1714 <pkgmetadata>
1715 <maintainer type="project">
1716 @@ -10,6 +10,5 @@
1717 </longdescription>
1718 <upstream>
1719 <remote-id type="pypi">widgetsnbextension</remote-id>
1720 - <remote-id type="github">ipython/ipywidgets</remote-id>
1721 </upstream>
1722 </pkgmetadata>
1723
1724 diff --git a/dev-tcltk/img_rotate/metadata.xml b/dev-tcltk/img_rotate/metadata.xml
1725 index f1310b451..2cb3f2bf3 100644
1726 --- a/dev-tcltk/img_rotate/metadata.xml
1727 +++ b/dev-tcltk/img_rotate/metadata.xml
1728 @@ -1,4 +1,4 @@
1729 -<?xml version="1.0" encoding="UTF-8"?>
1730 +<?xml version='1.0' encoding='UTF-8'?>
1731 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1732 <pkgmetadata>
1733 <maintainer type="project">
1734
1735 diff --git a/dev-tcltk/togl/metadata.xml b/dev-tcltk/togl/metadata.xml
1736 index d19c9b2f3..9499d8d89 100644
1737 --- a/dev-tcltk/togl/metadata.xml
1738 +++ b/dev-tcltk/togl/metadata.xml
1739 @@ -1,4 +1,4 @@
1740 -<?xml version="1.0" encoding="UTF-8"?>
1741 +<?xml version='1.0' encoding='UTF-8'?>
1742 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1743 <pkgmetadata>
1744 <maintainer type="project">
1745
1746 diff --git a/dev-tex/pythontex/metadata.xml b/dev-tex/pythontex/metadata.xml
1747 index 17dc4a877..dc4de7cb4 100644
1748 --- a/dev-tex/pythontex/metadata.xml
1749 +++ b/dev-tex/pythontex/metadata.xml
1750 @@ -1,4 +1,4 @@
1751 -<?xml version="1.0" encoding="UTF-8"?>
1752 +<?xml version='1.0' encoding='UTF-8'?>
1753 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1754 <pkgmetadata>
1755 <maintainer type="project">
1756
1757 diff --git a/media-gfx/brlcad/metadata.xml b/media-gfx/brlcad/metadata.xml
1758 index fd0913372..a5755a70a 100644
1759 --- a/media-gfx/brlcad/metadata.xml
1760 +++ b/media-gfx/brlcad/metadata.xml
1761 @@ -1,4 +1,4 @@
1762 -<?xml version="1.0" encoding="UTF-8"?>
1763 +<?xml version='1.0' encoding='UTF-8'?>
1764 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1765 <pkgmetadata>
1766 <maintainer type="person">
1767
1768 diff --git a/media-gfx/librecad/metadata.xml b/media-gfx/librecad/metadata.xml
1769 index 56059e49f..83d16d787 100644
1770 --- a/media-gfx/librecad/metadata.xml
1771 +++ b/media-gfx/librecad/metadata.xml
1772 @@ -1,4 +1,4 @@
1773 -<?xml version="1.0" encoding="UTF-8"?>
1774 +<?xml version='1.0' encoding='UTF-8'?>
1775 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1776 <pkgmetadata>
1777 <maintainer type="person">
1778
1779 diff --git a/media-libs/glbinding/metadata.xml b/media-libs/glbinding/metadata.xml
1780 index 4d6a1c0ac..5f82e29cb 100644
1781 --- a/media-libs/glbinding/metadata.xml
1782 +++ b/media-libs/glbinding/metadata.xml
1783 @@ -1,4 +1,4 @@
1784 -<?xml version="1.0" encoding="UTF-8"?>
1785 +<?xml version='1.0' encoding='UTF-8'?>
1786 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1787 <pkgmetadata>
1788 <maintainer type="person">
1789
1790 diff --git a/sci-astronomy/libthesky/metadata.xml b/sci-astronomy/libthesky/metadata.xml
1791 index 03ad4b5fd..374f32bf7 100644
1792 --- a/sci-astronomy/libthesky/metadata.xml
1793 +++ b/sci-astronomy/libthesky/metadata.xml
1794 @@ -1,4 +1,4 @@
1795 -<?xml version="1.0" encoding="UTF-8"?>
1796 +<?xml version='1.0' encoding='UTF-8'?>
1797 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1798 <pkgmetadata>
1799 <maintainer type="person">
1800
1801 diff --git a/sci-astronomy/mosstack/metadata.xml b/sci-astronomy/mosstack/metadata.xml
1802 index c8bd774a7..df5606cca 100644
1803 --- a/sci-astronomy/mosstack/metadata.xml
1804 +++ b/sci-astronomy/mosstack/metadata.xml
1805 @@ -1,4 +1,4 @@
1806 -<?xml version="1.0" encoding="UTF-8"?>
1807 +<?xml version='1.0' encoding='UTF-8'?>
1808 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1809 <pkgmetadata>
1810 <maintainer type="person">
1811
1812 diff --git a/sci-biology/AlignGraph/metadata.xml b/sci-biology/AlignGraph/metadata.xml
1813 index f060cdca7..7863f973a 100644
1814 --- a/sci-biology/AlignGraph/metadata.xml
1815 +++ b/sci-biology/AlignGraph/metadata.xml
1816 @@ -1,4 +1,4 @@
1817 -<?xml version="1.0" encoding="UTF-8"?>
1818 +<?xml version='1.0' encoding='UTF-8'?>
1819 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1820 <pkgmetadata>
1821 <maintainer type="person">
1822
1823 diff --git a/sci-biology/Atlas2/metadata.xml b/sci-biology/Atlas2/metadata.xml
1824 index 3ff6ceef1..4338746db 100644
1825 --- a/sci-biology/Atlas2/metadata.xml
1826 +++ b/sci-biology/Atlas2/metadata.xml
1827 @@ -1,4 +1,4 @@
1828 -<?xml version="1.0" encoding="UTF-8"?>
1829 +<?xml version='1.0' encoding='UTF-8'?>
1830 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1831 <pkgmetadata>
1832 <maintainer type="person">
1833 @@ -13,7 +13,7 @@
1834 Atlas2 is a next-generation sequencing suite of variant analysis
1835 tools specializing in the separation of true SNPs and insertions
1836 and deletions (indels) from sequencing and mapping errors in Whole
1837 - Exome Capture Sequencing (WECS) data.
1838 + Exome Capture Sequencing (WECS) data.
1839 </longdescription>
1840 <upstream>
1841 <remote-id type="sourceforge">downloads</remote-id>
1842
1843 diff --git a/sci-biology/BBmap/metadata.xml b/sci-biology/BBmap/metadata.xml
1844 index 40ba306f4..75990319d 100644
1845 --- a/sci-biology/BBmap/metadata.xml
1846 +++ b/sci-biology/BBmap/metadata.xml
1847 @@ -1,4 +1,4 @@
1848 -<?xml version="1.0" encoding="UTF-8"?>
1849 +<?xml version='1.0' encoding='UTF-8'?>
1850 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1851 <pkgmetadata>
1852 <maintainer type="person">
1853
1854 diff --git a/sci-biology/BRANCH/metadata.xml b/sci-biology/BRANCH/metadata.xml
1855 index e6ac3bb3f..ab90aa364 100644
1856 --- a/sci-biology/BRANCH/metadata.xml
1857 +++ b/sci-biology/BRANCH/metadata.xml
1858 @@ -1,4 +1,4 @@
1859 -<?xml version="1.0" encoding="UTF-8"?>
1860 +<?xml version='1.0' encoding='UTF-8'?>
1861 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1862 <pkgmetadata>
1863 <maintainer type="person">
1864
1865 diff --git a/sci-biology/BamView/metadata.xml b/sci-biology/BamView/metadata.xml
1866 index e25129704..ecc16433b 100644
1867 --- a/sci-biology/BamView/metadata.xml
1868 +++ b/sci-biology/BamView/metadata.xml
1869 @@ -1,4 +1,4 @@
1870 -<?xml version="1.0" encoding="UTF-8"?>
1871 +<?xml version='1.0' encoding='UTF-8'?>
1872 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1873 <pkgmetadata>
1874 <maintainer type="person">
1875
1876 diff --git a/sci-biology/BlastToSam/metadata.xml b/sci-biology/BlastToSam/metadata.xml
1877 index 9885a3a72..86bbb3764 100644
1878 --- a/sci-biology/BlastToSam/metadata.xml
1879 +++ b/sci-biology/BlastToSam/metadata.xml
1880 @@ -1,4 +1,4 @@
1881 -<?xml version="1.0" encoding="UTF-8"?>
1882 +<?xml version='1.0' encoding='UTF-8'?>
1883 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1884 <pkgmetadata>
1885 <maintainer type="person">
1886
1887 diff --git a/sci-biology/EBARDenovo/metadata.xml b/sci-biology/EBARDenovo/metadata.xml
1888 index 3aa5ff5d7..d0f646374 100644
1889 --- a/sci-biology/EBARDenovo/metadata.xml
1890 +++ b/sci-biology/EBARDenovo/metadata.xml
1891 @@ -1,4 +1,4 @@
1892 -<?xml version="1.0" encoding="UTF-8"?>
1893 +<?xml version='1.0' encoding='UTF-8'?>
1894 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1895 <pkgmetadata>
1896 <maintainer type="person">
1897 @@ -10,6 +10,6 @@
1898 <name>Gentoo Biology Project</name>
1899 </maintainer>
1900 <upstream>
1901 - <remote-id type="sourceforge">ebardenovo</remote-id>
1902 + <remote-id type="sourceforge">downloads</remote-id>
1903 </upstream>
1904 </pkgmetadata>
1905
1906 diff --git a/sci-biology/FLASH/metadata.xml b/sci-biology/FLASH/metadata.xml
1907 index bb87910ab..d0f646374 100644
1908 --- a/sci-biology/FLASH/metadata.xml
1909 +++ b/sci-biology/FLASH/metadata.xml
1910 @@ -1,4 +1,4 @@
1911 -<?xml version="1.0" encoding="UTF-8"?>
1912 +<?xml version='1.0' encoding='UTF-8'?>
1913 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1914 <pkgmetadata>
1915 <maintainer type="person">
1916 @@ -10,6 +10,6 @@
1917 <name>Gentoo Biology Project</name>
1918 </maintainer>
1919 <upstream>
1920 - <remote-id type="sourceforge">flashpage</remote-id>
1921 + <remote-id type="sourceforge">downloads</remote-id>
1922 </upstream>
1923 </pkgmetadata>
1924
1925 diff --git a/sci-biology/HTSeq/metadata.xml b/sci-biology/HTSeq/metadata.xml
1926 index a51edc8ae..b08ab454b 100644
1927 --- a/sci-biology/HTSeq/metadata.xml
1928 +++ b/sci-biology/HTSeq/metadata.xml
1929 @@ -1,4 +1,4 @@
1930 -<?xml version="1.0" encoding="UTF-8"?>
1931 +<?xml version='1.0' encoding='UTF-8'?>
1932 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1933 <pkgmetadata>
1934 <maintainer type="person">
1935
1936 diff --git a/sci-biology/IMAGE/metadata.xml b/sci-biology/IMAGE/metadata.xml
1937 index 6d3e53e2e..3dcd782d1 100644
1938 --- a/sci-biology/IMAGE/metadata.xml
1939 +++ b/sci-biology/IMAGE/metadata.xml
1940 @@ -1,4 +1,4 @@
1941 -<?xml version="1.0" encoding="UTF-8"?>
1942 +<?xml version='1.0' encoding='UTF-8'?>
1943 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1944 <pkgmetadata>
1945 <maintainer type="person">
1946
1947 diff --git a/sci-biology/InterMine/metadata.xml b/sci-biology/InterMine/metadata.xml
1948 index 5ac633a2e..5c9c50b32 100644
1949 --- a/sci-biology/InterMine/metadata.xml
1950 +++ b/sci-biology/InterMine/metadata.xml
1951 @@ -1,4 +1,4 @@
1952 -<?xml version="1.0" encoding="UTF-8"?>
1953 +<?xml version='1.0' encoding='UTF-8'?>
1954 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1955 <pkgmetadata>
1956 <maintainer type="person">
1957
1958 diff --git a/sci-biology/MeV/metadata.xml b/sci-biology/MeV/metadata.xml
1959 index ef6150af4..6ed96d4bc 100644
1960 --- a/sci-biology/MeV/metadata.xml
1961 +++ b/sci-biology/MeV/metadata.xml
1962 @@ -1,4 +1,4 @@
1963 -<?xml version="1.0" encoding="UTF-8"?>
1964 +<?xml version='1.0' encoding='UTF-8'?>
1965 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1966 <pkgmetadata>
1967 <maintainer type="person">
1968 @@ -9,6 +9,6 @@
1969 <name>Gentoo Biology Project</name>
1970 </maintainer>
1971 <upstream>
1972 - <remote-id type="sourceforge">mev-tm4</remote-id>
1973 + <remote-id type="sourceforge">downloads</remote-id>
1974 </upstream>
1975 </pkgmetadata>
1976
1977 diff --git a/sci-biology/NGSTools/metadata.xml b/sci-biology/NGSTools/metadata.xml
1978 index 7361e7654..fe6859dd7 100644
1979 --- a/sci-biology/NGSTools/metadata.xml
1980 +++ b/sci-biology/NGSTools/metadata.xml
1981 @@ -1,4 +1,4 @@
1982 -<?xml version="1.0" encoding="UTF-8"?>
1983 +<?xml version='1.0' encoding='UTF-8'?>
1984 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1985 <pkgmetadata>
1986 <maintainer type="person">
1987
1988 diff --git a/sci-biology/OBO-Edit/metadata.xml b/sci-biology/OBO-Edit/metadata.xml
1989 index acbbc35a4..115a34c41 100644
1990 --- a/sci-biology/OBO-Edit/metadata.xml
1991 +++ b/sci-biology/OBO-Edit/metadata.xml
1992 @@ -1,4 +1,4 @@
1993 -<?xml version="1.0" encoding="UTF-8"?>
1994 +<?xml version='1.0' encoding='UTF-8'?>
1995 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1996 <pkgmetadata>
1997 <maintainer type="person">
1998
1999 diff --git a/sci-biology/RSeQC/metadata.xml b/sci-biology/RSeQC/metadata.xml
2000 index 0452b2835..54bdfb597 100644
2001 --- a/sci-biology/RSeQC/metadata.xml
2002 +++ b/sci-biology/RSeQC/metadata.xml
2003 @@ -1,4 +1,4 @@
2004 -<?xml version="1.0" encoding="UTF-8"?>
2005 +<?xml version='1.0' encoding='UTF-8'?>
2006 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2007 <pkgmetadata>
2008 <maintainer type="person">
2009
2010 diff --git a/sci-biology/Ray/metadata.xml b/sci-biology/Ray/metadata.xml
2011 index 982286fb0..fb7092ff7 100644
2012 --- a/sci-biology/Ray/metadata.xml
2013 +++ b/sci-biology/Ray/metadata.xml
2014 @@ -1,4 +1,4 @@
2015 -<?xml version="1.0" encoding="UTF-8"?>
2016 +<?xml version='1.0' encoding='UTF-8'?>
2017 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2018 <pkgmetadata>
2019 <maintainer type="person">
2020
2021 diff --git a/sci-biology/STAR/metadata.xml b/sci-biology/STAR/metadata.xml
2022 index 68af3388c..f053775b5 100644
2023 --- a/sci-biology/STAR/metadata.xml
2024 +++ b/sci-biology/STAR/metadata.xml
2025 @@ -1,4 +1,4 @@
2026 -<?xml version="1.0" encoding="UTF-8"?>
2027 +<?xml version='1.0' encoding='UTF-8'?>
2028 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2029 <pkgmetadata>
2030 <maintainer type="person">
2031
2032 diff --git a/sci-biology/SolexaQA/metadata.xml b/sci-biology/SolexaQA/metadata.xml
2033 index c9f605e75..f7714240a 100644
2034 --- a/sci-biology/SolexaQA/metadata.xml
2035 +++ b/sci-biology/SolexaQA/metadata.xml
2036 @@ -1,4 +1,4 @@
2037 -<?xml version="1.0" encoding="UTF-8"?>
2038 +<?xml version='1.0' encoding='UTF-8'?>
2039 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2040 <pkgmetadata>
2041 <maintainer type="person">
2042 @@ -10,6 +10,6 @@
2043 <name>Gentoo Biology Project</name>
2044 </maintainer>
2045 <upstream>
2046 - <remote-id type="sourceforge">clview</remote-id>
2047 + <remote-id type="sourceforge">solexaqa</remote-id>
2048 </upstream>
2049 </pkgmetadata>
2050
2051 diff --git a/sci-biology/TransDecoder/metadata.xml b/sci-biology/TransDecoder/metadata.xml
2052 index 42a56a27e..1a522bbe1 100644
2053 --- a/sci-biology/TransDecoder/metadata.xml
2054 +++ b/sci-biology/TransDecoder/metadata.xml
2055 @@ -1,4 +1,4 @@
2056 -<?xml version="1.0" encoding="UTF-8"?>
2057 +<?xml version='1.0' encoding='UTF-8'?>
2058 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2059 <pkgmetadata>
2060 <maintainer type="person">
2061 @@ -11,6 +11,5 @@
2062 </maintainer>
2063 <upstream>
2064 <remote-id type="github">TransDecoder/TransDecoder</remote-id>
2065 - <remote-id type="sourceforge">transdecoder</remote-id>
2066 </upstream>
2067 </pkgmetadata>
2068
2069 diff --git a/sci-biology/Trinotate/metadata.xml b/sci-biology/Trinotate/metadata.xml
2070 index f409887af..b183ac8ee 100644
2071 --- a/sci-biology/Trinotate/metadata.xml
2072 +++ b/sci-biology/Trinotate/metadata.xml
2073 @@ -1,4 +1,4 @@
2074 -<?xml version="1.0" encoding="UTF-8"?>
2075 +<?xml version='1.0' encoding='UTF-8'?>
2076 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2077 <pkgmetadata>
2078 <maintainer type="person">
2079
2080 diff --git a/sci-biology/VarScan-bin/metadata.xml b/sci-biology/VarScan-bin/metadata.xml
2081 index e27dba2e9..01850f614 100644
2082 --- a/sci-biology/VarScan-bin/metadata.xml
2083 +++ b/sci-biology/VarScan-bin/metadata.xml
2084 @@ -6,7 +6,6 @@
2085 <name>Gentoo Science Project</name>
2086 </maintainer>
2087 <upstream>
2088 - <remote-id type="sourceforge">varscan</remote-id>
2089 <remote-id type="github">dkoboldt/varscan</remote-id>
2090 </upstream>
2091 </pkgmetadata>
2092
2093 diff --git a/sci-biology/VarScan/metadata.xml b/sci-biology/VarScan/metadata.xml
2094 index e27dba2e9..c9cbb67e6 100644
2095 --- a/sci-biology/VarScan/metadata.xml
2096 +++ b/sci-biology/VarScan/metadata.xml
2097 @@ -6,7 +6,7 @@
2098 <name>Gentoo Science Project</name>
2099 </maintainer>
2100 <upstream>
2101 - <remote-id type="sourceforge">varscan</remote-id>
2102 <remote-id type="github">dkoboldt/varscan</remote-id>
2103 + <remote-id type="sourceforge">varscan</remote-id>
2104 </upstream>
2105 </pkgmetadata>
2106
2107 diff --git a/sci-biology/abacas/metadata.xml b/sci-biology/abacas/metadata.xml
2108 index c458ee97f..d0f646374 100644
2109 --- a/sci-biology/abacas/metadata.xml
2110 +++ b/sci-biology/abacas/metadata.xml
2111 @@ -1,4 +1,4 @@
2112 -<?xml version="1.0" encoding="UTF-8"?>
2113 +<?xml version='1.0' encoding='UTF-8'?>
2114 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2115 <pkgmetadata>
2116 <maintainer type="person">
2117 @@ -10,6 +10,6 @@
2118 <name>Gentoo Biology Project</name>
2119 </maintainer>
2120 <upstream>
2121 - <remote-id type="sourceforge">abacas</remote-id>
2122 + <remote-id type="sourceforge">downloads</remote-id>
2123 </upstream>
2124 </pkgmetadata>
2125
2126 diff --git a/sci-biology/amos/metadata.xml b/sci-biology/amos/metadata.xml
2127 index d8574e5f0..5b2ca1a74 100644
2128 --- a/sci-biology/amos/metadata.xml
2129 +++ b/sci-biology/amos/metadata.xml
2130 @@ -1,4 +1,4 @@
2131 -<?xml version="1.0" encoding="UTF-8"?>
2132 +<?xml version='1.0' encoding='UTF-8'?>
2133 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2134 <pkgmetadata>
2135 <maintainer type="person">
2136
2137 diff --git a/sci-biology/bambus/metadata.xml b/sci-biology/bambus/metadata.xml
2138 index 4736dbff7..1054fc1ed 100644
2139 --- a/sci-biology/bambus/metadata.xml
2140 +++ b/sci-biology/bambus/metadata.xml
2141 @@ -1,4 +1,4 @@
2142 -<?xml version="1.0" encoding="UTF-8"?>
2143 +<?xml version='1.0' encoding='UTF-8'?>
2144 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2145 <pkgmetadata>
2146 <maintainer type="person">
2147 @@ -11,6 +11,6 @@
2148 </maintainer>
2149 <longdescription>Bambus is the first general purpose scaffolder that is publicly available as an open source package. While most other scaffolders are closely tied to a specific assembly program, Bambus accepts the output from most current assemblers and provides the user with great flexibility in choosing the scaffolding parameters. In particular, Bambus is able to accept contig linking data other than specified by mate-pairs. Such sources of information include alignment to a reference genome (Bambus can directly use the output of MUMmer), physical mapping data, or information about gene synteny.</longdescription>
2150 <upstream>
2151 - <remote-id type="sourceforge">amos</remote-id>
2152 + <remote-id type="sourceforge">mira-assembler</remote-id>
2153 </upstream>
2154 </pkgmetadata>
2155
2156 diff --git a/sci-biology/bamtools/metadata.xml b/sci-biology/bamtools/metadata.xml
2157 index fb098c773..7f0271ab3 100644
2158 --- a/sci-biology/bamtools/metadata.xml
2159 +++ b/sci-biology/bamtools/metadata.xml
2160 @@ -1,4 +1,4 @@
2161 -<?xml version="1.0" encoding="UTF-8"?>
2162 +<?xml version='1.0' encoding='UTF-8'?>
2163 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2164 <pkgmetadata>
2165 <maintainer type="person">
2166
2167 diff --git a/sci-biology/bcftools/metadata.xml b/sci-biology/bcftools/metadata.xml
2168 index 74c17a114..d65c87aa3 100644
2169 --- a/sci-biology/bcftools/metadata.xml
2170 +++ b/sci-biology/bcftools/metadata.xml
2171 @@ -1,4 +1,4 @@
2172 -<?xml version="1.0" encoding="UTF-8"?>
2173 +<?xml version='1.0' encoding='UTF-8'?>
2174 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2175 <pkgmetadata>
2176 <maintainer type="person">
2177
2178 diff --git a/sci-biology/biobambam/metadata.xml b/sci-biology/biobambam/metadata.xml
2179 index a3e55a407..38f3b45cf 100644
2180 --- a/sci-biology/biobambam/metadata.xml
2181 +++ b/sci-biology/biobambam/metadata.xml
2182 @@ -1,4 +1,4 @@
2183 -<?xml version="1.0" encoding="UTF-8"?>
2184 +<?xml version='1.0' encoding='UTF-8'?>
2185 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2186 <pkgmetadata>
2187 <maintainer type="project">
2188 @@ -14,7 +14,7 @@ bammaskflags: reads BAM and writes BAM while masking (removing) bits from the fl
2189 bamrecompress: reads BAM and writes BAM with a defined compression setting. This tool is capable of multi-threading.
2190 bamsort: reads BAM and writes BAM resorted by coordinates or query name
2191 bamtofastq: reads BAM and writes FastQ; output can be collated or uncollated by query name
2192 -</longdescription>
2193 + </longdescription>
2194 <upstream>
2195 <remote-id type="github">gt1/biobambam</remote-id>
2196 </upstream>
2197
2198 diff --git a/sci-biology/biobambam2/metadata.xml b/sci-biology/biobambam2/metadata.xml
2199 index a3e55a407..cb036d969 100644
2200 --- a/sci-biology/biobambam2/metadata.xml
2201 +++ b/sci-biology/biobambam2/metadata.xml
2202 @@ -1,4 +1,4 @@
2203 -<?xml version="1.0" encoding="UTF-8"?>
2204 +<?xml version='1.0' encoding='UTF-8'?>
2205 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2206 <pkgmetadata>
2207 <maintainer type="project">
2208 @@ -14,8 +14,8 @@ bammaskflags: reads BAM and writes BAM while masking (removing) bits from the fl
2209 bamrecompress: reads BAM and writes BAM with a defined compression setting. This tool is capable of multi-threading.
2210 bamsort: reads BAM and writes BAM resorted by coordinates or query name
2211 bamtofastq: reads BAM and writes FastQ; output can be collated or uncollated by query name
2212 -</longdescription>
2213 + </longdescription>
2214 <upstream>
2215 - <remote-id type="github">gt1/biobambam</remote-id>
2216 + <remote-id type="github">gt1/biobambam2</remote-id>
2217 </upstream>
2218 </pkgmetadata>
2219
2220 diff --git a/sci-biology/bru2nii/metadata.xml b/sci-biology/bru2nii/metadata.xml
2221 index 0cec33715..90ef9367d 100644
2222 --- a/sci-biology/bru2nii/metadata.xml
2223 +++ b/sci-biology/bru2nii/metadata.xml
2224 @@ -1,4 +1,4 @@
2225 -<?xml version="1.0" encoding="UTF-8"?>
2226 +<?xml version='1.0' encoding='UTF-8'?>
2227 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2228 <pkgmetadata>
2229 <maintainer type="project">
2230 @@ -8,7 +8,7 @@
2231 <longdescription lang="en">
2232 This is a simple tool for converting Bruker ParaVision MRI data to
2233 the NIfTI file format. It includes both a drag-and-drop graphical
2234 - interface (Bru2Nii) as well as a command line tool (Bru2).
2235 + interface (Bru2Nii) as well as a command line tool (Bru2).
2236 </longdescription>
2237 <upstream>
2238 <remote-id type="github">neurolabusc/Bru2Nii</remote-id>
2239
2240 diff --git a/sci-biology/bx-python/metadata.xml b/sci-biology/bx-python/metadata.xml
2241 index 0a7390bf1..8cdea5d5a 100644
2242 --- a/sci-biology/bx-python/metadata.xml
2243 +++ b/sci-biology/bx-python/metadata.xml
2244 @@ -1,4 +1,4 @@
2245 -<?xml version="1.0" encoding="UTF-8"?>
2246 +<?xml version='1.0' encoding='UTF-8'?>
2247 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2248 <pkgmetadata>
2249 <maintainer type="person">
2250 @@ -10,7 +10,7 @@
2251 <name>Gentoo Biology Project</name>
2252 </maintainer>
2253 <upstream>
2254 - <remote-id type="pypi">bx-python</remote-id>
2255 <remote-id type="bitbucket">james_taylor/bx-python</remote-id>
2256 + <remote-id type="pypi">bx-python</remote-id>
2257 </upstream>
2258 </pkgmetadata>
2259
2260 diff --git a/sci-biology/cd-hit/metadata.xml b/sci-biology/cd-hit/metadata.xml
2261 index 1f3b07521..7f866330d 100644
2262 --- a/sci-biology/cd-hit/metadata.xml
2263 +++ b/sci-biology/cd-hit/metadata.xml
2264 @@ -21,7 +21,6 @@ duplicates from pyrosequencing reads. The usage of other programs and
2265 scripts can be found in CD-HIT user's guide.
2266 </longdescription>
2267 <upstream>
2268 - <remote-id type="google-code">cdhit</remote-id>
2269 <remote-id type="github">weizhongli/cdhit</remote-id>
2270 </upstream>
2271 </pkgmetadata>
2272
2273 diff --git a/sci-biology/clview/metadata.xml b/sci-biology/clview/metadata.xml
2274 index 7adf609cd..31020917d 100644
2275 --- a/sci-biology/clview/metadata.xml
2276 +++ b/sci-biology/clview/metadata.xml
2277 @@ -1,4 +1,4 @@
2278 -<?xml version="1.0" encoding="UTF-8"?>
2279 +<?xml version='1.0' encoding='UTF-8'?>
2280 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2281 <pkgmetadata>
2282 <maintainer type="person">
2283
2284 diff --git a/sci-biology/codonw/metadata.xml b/sci-biology/codonw/metadata.xml
2285 index f66d7b796..fcb129873 100644
2286 --- a/sci-biology/codonw/metadata.xml
2287 +++ b/sci-biology/codonw/metadata.xml
2288 @@ -1,4 +1,4 @@
2289 -<?xml version="1.0" encoding="UTF-8"?>
2290 +<?xml version='1.0' encoding='UTF-8'?>
2291 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2292 <pkgmetadata>
2293 <maintainer type="project">
2294
2295 diff --git a/sci-biology/conifer/metadata.xml b/sci-biology/conifer/metadata.xml
2296 index fe4173913..d0f646374 100644
2297 --- a/sci-biology/conifer/metadata.xml
2298 +++ b/sci-biology/conifer/metadata.xml
2299 @@ -1,4 +1,4 @@
2300 -<?xml version="1.0" encoding="UTF-8"?>
2301 +<?xml version='1.0' encoding='UTF-8'?>
2302 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2303 <pkgmetadata>
2304 <maintainer type="person">
2305
2306 diff --git a/sci-biology/cortex_var/metadata.xml b/sci-biology/cortex_var/metadata.xml
2307 index aeef1bbec..fe8a20d2e 100644
2308 --- a/sci-biology/cortex_var/metadata.xml
2309 +++ b/sci-biology/cortex_var/metadata.xml
2310 @@ -1,4 +1,4 @@
2311 -<?xml version="1.0" encoding="UTF-8"?>
2312 +<?xml version='1.0' encoding='UTF-8'?>
2313 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2314 <pkgmetadata>
2315 <maintainer type="person">
2316
2317 diff --git a/sci-biology/cutadapt/metadata.xml b/sci-biology/cutadapt/metadata.xml
2318 index d432ff9a4..b6f11bf51 100644
2319 --- a/sci-biology/cutadapt/metadata.xml
2320 +++ b/sci-biology/cutadapt/metadata.xml
2321 @@ -10,7 +10,7 @@
2322 <name>Gentoo Biology Project</name>
2323 </maintainer>
2324 <upstream>
2325 - <remote-id type="pypi">cutadapt</remote-id>
2326 <remote-id type="github">marcelm/cutadapt</remote-id>
2327 + <remote-id type="pypi">cutadapt</remote-id>
2328 </upstream>
2329 </pkgmetadata>
2330
2331 diff --git a/sci-biology/dipy/metadata.xml b/sci-biology/dipy/metadata.xml
2332 index 1df8ab815..23f050681 100644
2333 --- a/sci-biology/dipy/metadata.xml
2334 +++ b/sci-biology/dipy/metadata.xml
2335 @@ -1,4 +1,4 @@
2336 -<?xml version="1.0" encoding="UTF-8"?>
2337 +<?xml version='1.0' encoding='UTF-8'?>
2338 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2339 <pkgmetadata>
2340 <maintainer type="person">
2341
2342 diff --git a/sci-biology/discrover/metadata.xml b/sci-biology/discrover/metadata.xml
2343 index bab24b6a0..1055813e9 100644
2344 --- a/sci-biology/discrover/metadata.xml
2345 +++ b/sci-biology/discrover/metadata.xml
2346 @@ -1,4 +1,4 @@
2347 -<?xml version="1.0" encoding="UTF-8"?>
2348 +<?xml version='1.0' encoding='UTF-8'?>
2349 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2350 <pkgmetadata>
2351 <maintainer type="person">
2352
2353 diff --git a/sci-biology/epga/metadata.xml b/sci-biology/epga/metadata.xml
2354 index 991e17bf8..615525179 100644
2355 --- a/sci-biology/epga/metadata.xml
2356 +++ b/sci-biology/epga/metadata.xml
2357 @@ -1,4 +1,4 @@
2358 -<?xml version="1.0" encoding="UTF-8"?>
2359 +<?xml version='1.0' encoding='UTF-8'?>
2360 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2361 <pkgmetadata>
2362 <maintainer type="person">
2363
2364 diff --git a/sci-biology/estscan/metadata.xml b/sci-biology/estscan/metadata.xml
2365 index d709341c0..138f8c095 100644
2366 --- a/sci-biology/estscan/metadata.xml
2367 +++ b/sci-biology/estscan/metadata.xml
2368 @@ -1,4 +1,4 @@
2369 -<?xml version="1.0" encoding="UTF-8"?>
2370 +<?xml version='1.0' encoding='UTF-8'?>
2371 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2372 <pkgmetadata>
2373 <maintainer type="person">
2374 @@ -14,6 +14,6 @@
2375 <flag name="ifc">Undocumented USE</flag>
2376 </use>
2377 <upstream>
2378 - <remote-id type="sourceforge">estscan</remote-id>
2379 + <remote-id type="sourceforge">downloads</remote-id>
2380 </upstream>
2381 </pkgmetadata>
2382
2383 diff --git a/sci-biology/exonerate-gff3/metadata.xml b/sci-biology/exonerate-gff3/metadata.xml
2384 index 10ca6b365..378558dab 100644
2385 --- a/sci-biology/exonerate-gff3/metadata.xml
2386 +++ b/sci-biology/exonerate-gff3/metadata.xml
2387 @@ -1,4 +1,4 @@
2388 -<?xml version="1.0" encoding="UTF-8"?>
2389 +<?xml version='1.0' encoding='UTF-8'?>
2390 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2391 <pkgmetadata>
2392 <maintainer type="person">
2393
2394 diff --git a/sci-biology/fastx_toolkit/metadata.xml b/sci-biology/fastx_toolkit/metadata.xml
2395 index 8203c3958..4db9d1693 100644
2396 --- a/sci-biology/fastx_toolkit/metadata.xml
2397 +++ b/sci-biology/fastx_toolkit/metadata.xml
2398 @@ -1,4 +1,4 @@
2399 -<?xml version="1.0" encoding="UTF-8"?>
2400 +<?xml version='1.0' encoding='UTF-8'?>
2401 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2402 <pkgmetadata>
2403 <maintainer type="project">
2404
2405 diff --git a/sci-biology/ffindex/metadata.xml b/sci-biology/ffindex/metadata.xml
2406 index ccb4049fc..18e09466d 100644
2407 --- a/sci-biology/ffindex/metadata.xml
2408 +++ b/sci-biology/ffindex/metadata.xml
2409 @@ -1,4 +1,4 @@
2410 -<?xml version="1.0" encoding="UTF-8"?>
2411 +<?xml version='1.0' encoding='UTF-8'?>
2412 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2413 <pkgmetadata>
2414 <maintainer type="person">
2415 @@ -9,7 +9,4 @@
2416 <email>sci-biology@g.o</email>
2417 <name>Gentoo Biology Project</name>
2418 </maintainer>
2419 - <upstream>
2420 - <remote-id type="github">TransDecoder/TransDecoder</remote-id>
2421 - </upstream>
2422 </pkgmetadata>
2423
2424 diff --git a/sci-biology/flexbar/metadata.xml b/sci-biology/flexbar/metadata.xml
2425 index 6bf81a0d4..adfdd237a 100644
2426 --- a/sci-biology/flexbar/metadata.xml
2427 +++ b/sci-biology/flexbar/metadata.xml
2428 @@ -10,7 +10,6 @@
2429 <name>Gentoo Biology Project</name>
2430 </maintainer>
2431 <upstream>
2432 - <remote-id type="sourceforge">flexbar</remote-id>
2433 <remote-id type="github">seqan/flexbar</remote-id>
2434 </upstream>
2435 </pkgmetadata>
2436
2437 diff --git a/sci-biology/freebayes/metadata.xml b/sci-biology/freebayes/metadata.xml
2438 index a82cda59f..fdd189bd5 100644
2439 --- a/sci-biology/freebayes/metadata.xml
2440 +++ b/sci-biology/freebayes/metadata.xml
2441 @@ -1,4 +1,4 @@
2442 -<?xml version="1.0" encoding="UTF-8"?>
2443 +<?xml version='1.0' encoding='UTF-8'?>
2444 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2445 <pkgmetadata>
2446 <maintainer type="person">
2447
2448 diff --git a/sci-biology/fsa/metadata.xml b/sci-biology/fsa/metadata.xml
2449 index ec2601d87..d0f646374 100644
2450 --- a/sci-biology/fsa/metadata.xml
2451 +++ b/sci-biology/fsa/metadata.xml
2452 @@ -1,4 +1,4 @@
2453 -<?xml version="1.0" encoding="UTF-8"?>
2454 +<?xml version='1.0' encoding='UTF-8'?>
2455 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2456 <pkgmetadata>
2457 <maintainer type="person">
2458 @@ -10,6 +10,6 @@
2459 <name>Gentoo Biology Project</name>
2460 </maintainer>
2461 <upstream>
2462 - <remote-id type="sourceforge">fsa</remote-id>
2463 + <remote-id type="sourceforge">downloads</remote-id>
2464 </upstream>
2465 </pkgmetadata>