Gentoo Archives: gentoo-commits

From: Justin Lecher <jlec@g.o>
To: gentoo-commits@l.g.o
Subject: [gentoo-commits] proj/sci:master commit in: dev-python/ptyprocess/, sci-electronics/player/, sci-biology/BBmap/, ...
Date: Sun, 30 Apr 2017 10:13:15
Message-Id: 1493547168.3199ec7737e923dc19479e5de7b31bb583071931.jlec@gentoo
1 commit: 3199ec7737e923dc19479e5de7b31bb583071931
2 Author: Justin Lecher <jlec <AT> gentoo <DOT> org>
3 AuthorDate: Sun Apr 30 10:12:48 2017 +0000
4 Commit: Justin Lecher <jlec <AT> gentoo <DOT> org>
5 CommitDate: Sun Apr 30 10:12:48 2017 +0000
6 URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=3199ec77
7
8 Cleanup remote IDs
9
10 Signed-off-by: Justin Lecher <jlec <AT> gentoo.org>
11
12 app-benchmarks/btl/metadata.xml | 2 +-
13 app-benchmarks/numbench/metadata.xml | 2 +-
14 app-doc/root-docs/metadata.xml | 5 +----
15 app-vim/vim-gromacs/metadata.xml | 4 ++--
16 dev-cpp/eigen/metadata.xml | 2 +-
17 dev-cpp/icnc/metadata.xml | 5 +----
18 dev-java/gluegen/metadata.xml | 4 ++--
19 dev-java/htsjdk/metadata.xml | 1 -
20 dev-java/jeuclid-core/metadata.xml | 4 ++--
21 dev-java/jogl/metadata.xml | 4 ++--
22 dev-lang/conceptual/metadata.xml | 2 +-
23 dev-lang/terra/metadata.xml | 2 +-
24 dev-libs/boost-compute/metadata.xml | 2 +-
25 dev-libs/libcuda/metadata.xml | 2 +-
26 dev-libs/libgdev/metadata.xml | 2 +-
27 dev-libs/utf8proc/metadata.xml | 4 ++--
28 dev-ml/lacaml/metadata.xml | 2 +-
29 dev-perl/BTLib/metadata.xml | 2 +-
30 dev-perl/opal-client/metadata.xml | 2 +-
31 dev-python/PeakUtils/metadata.xml | 2 +-
32 dev-python/PyVISA-py/metadata.xml | 4 ++--
33 dev-python/PyVISA/metadata.xml | 4 ++--
34 dev-python/RecSQL/metadata.xml | 5 +----
35 dev-python/arrayfire-python/metadata.xml | 2 +-
36 dev-python/astropy-helpers/metadata.xml | 3 +--
37 dev-python/astroquery/metadata.xml | 3 +--
38 dev-python/brewer2mpl/metadata.xml | 4 ++--
39 dev-python/ccdproc/metadata.xml | 3 +--
40 dev-python/coards/metadata.xml | 2 +-
41 dev-python/dijitso/metadata.xml | 5 ++---
42 dev-python/dimensionful/metadata.xml | 2 +-
43 dev-python/ffc/metadata.xml | 3 +--
44 dev-python/ffnet/metadata.xml | 1 -
45 dev-python/ffnetui/metadata.xml | 1 -
46 dev-python/fiat/metadata.xml | 3 +--
47 dev-python/gammapy/metadata.xml | 3 +--
48 dev-python/hdf5storage/metadata.xml | 4 ++--
49 dev-python/imageutils/metadata.xml | 3 +--
50 dev-python/instant/metadata.xml | 3 +--
51 dev-python/ipykernel/metadata.xml | 3 +--
52 dev-python/ipyparallel/metadata.xml | 5 +----
53 dev-python/ipython_genutils/metadata.xml | 3 +--
54 dev-python/ipywidgets/metadata.xml | 2 +-
55 dev-python/jupyter_client/metadata.xml | 5 +----
56 dev-python/jupyter_console/metadata.xml | 5 +----
57 dev-python/jupyter_core/metadata.xml | 5 +----
58 dev-python/matlab_wrapper/metadata.xml | 4 ++--
59 dev-python/matplotlib-venn/metadata.xml | 1 -
60 dev-python/matplotlib2tikz/metadata.xml | 3 +--
61 dev-python/matrix2latex/metadata.xml | 4 ++--
62 dev-python/meshpy/metadata.xml | 4 ++--
63 dev-python/metakernel/metadata.xml | 4 ++--
64 dev-python/metakernel_bash/metadata.xml | 4 ++--
65 dev-python/metakernel_python/metadata.xml | 4 ++--
66 dev-python/nbconvert/metadata.xml | 5 +----
67 dev-python/nbdime/metadata.xml | 8 ++------
68 dev-python/nbformat/metadata.xml | 5 +----
69 dev-python/newrelic/metadata.xml | 2 +-
70 dev-python/notebook/metadata.xml | 2 +-
71 dev-python/nvidia-ml-py/metadata.xml | 2 +-
72 dev-python/omniorbpy/metadata.xml | 2 +-
73 dev-python/opal-client/metadata.xml | 2 +-
74 dev-python/pamela/metadata.xml | 4 ++--
75 dev-python/photutils/metadata.xml | 3 +--
76 dev-python/pickleshare/metadata.xml | 3 +--
77 dev-python/prettyplotlib/metadata.xml | 4 ++--
78 dev-python/prov/metadata.xml | 2 +-
79 dev-python/ptyprocess/metadata.xml | 2 +-
80 dev-python/pydotplus/metadata.xml | 2 +-
81 dev-python/pyfftw/metadata.xml | 2 +-
82 dev-python/pyhdf/metadata.xml | 2 +-
83 dev-python/pylibconfig2/metadata.xml | 4 ++--
84 dev-python/pynomo/metadata.xml | 4 ++--
85 dev-python/pysolar/metadata.xml | 5 ++---
86 dev-python/python-ivi/metadata.xml | 2 +-
87 dev-python/python-vxi11/metadata.xml | 2 +-
88 dev-python/pythoncgns/metadata.xml | 2 +-
89 dev-python/pythonqt/metadata.xml | 2 +-
90 dev-python/qtconsole/metadata.xml | 5 +----
91 dev-python/snakemake/metadata.xml | 1 -
92 dev-python/specutils/metadata.xml | 3 +--
93 dev-python/symengine/metadata.xml | 2 +-
94 dev-python/testpath/metadata.xml | 5 +----
95 dev-python/traitlets/metadata.xml | 3 +--
96 dev-python/ufl/metadata.xml | 3 +--
97 dev-python/viper/metadata.xml | 2 +-
98 dev-python/widgetsnbextension/metadata.xml | 3 +--
99 dev-tcltk/img_rotate/metadata.xml | 2 +-
100 dev-tcltk/togl/metadata.xml | 2 +-
101 dev-tex/pythontex/metadata.xml | 2 +-
102 media-gfx/brlcad/metadata.xml | 2 +-
103 media-gfx/librecad/metadata.xml | 2 +-
104 media-libs/glbinding/metadata.xml | 2 +-
105 sci-astronomy/libthesky/metadata.xml | 2 +-
106 sci-astronomy/mosstack/metadata.xml | 2 +-
107 sci-biology/AlignGraph/metadata.xml | 2 +-
108 sci-biology/Atlas2/metadata.xml | 4 ++--
109 sci-biology/BBmap/metadata.xml | 2 +-
110 sci-biology/BRANCH/metadata.xml | 2 +-
111 sci-biology/BamView/metadata.xml | 2 +-
112 sci-biology/BlastToSam/metadata.xml | 2 +-
113 sci-biology/EBARDenovo/metadata.xml | 4 ++--
114 sci-biology/FLASH/metadata.xml | 4 ++--
115 sci-biology/HTSeq/metadata.xml | 2 +-
116 sci-biology/IMAGE/metadata.xml | 2 +-
117 sci-biology/InterMine/metadata.xml | 2 +-
118 sci-biology/MeV/metadata.xml | 4 ++--
119 sci-biology/NGSTools/metadata.xml | 2 +-
120 sci-biology/OBO-Edit/metadata.xml | 2 +-
121 sci-biology/RSeQC/metadata.xml | 2 +-
122 sci-biology/Ray/metadata.xml | 2 +-
123 sci-biology/STAR/metadata.xml | 2 +-
124 sci-biology/SolexaQA/metadata.xml | 4 ++--
125 sci-biology/TransDecoder/metadata.xml | 3 +--
126 sci-biology/Trinotate/metadata.xml | 2 +-
127 sci-biology/VarScan-bin/metadata.xml | 1 -
128 sci-biology/VarScan/metadata.xml | 2 +-
129 sci-biology/abacas/metadata.xml | 4 ++--
130 sci-biology/amos/metadata.xml | 2 +-
131 sci-biology/bambus/metadata.xml | 4 ++--
132 sci-biology/bamtools/metadata.xml | 2 +-
133 sci-biology/bcftools/metadata.xml | 2 +-
134 sci-biology/biobambam/metadata.xml | 4 ++--
135 sci-biology/biobambam2/metadata.xml | 6 +++---
136 sci-biology/bru2nii/metadata.xml | 4 ++--
137 sci-biology/bx-python/metadata.xml | 4 ++--
138 sci-biology/cd-hit/metadata.xml | 1 -
139 sci-biology/clview/metadata.xml | 2 +-
140 sci-biology/codonw/metadata.xml | 2 +-
141 sci-biology/conifer/metadata.xml | 2 +-
142 sci-biology/cortex_var/metadata.xml | 2 +-
143 sci-biology/cutadapt/metadata.xml | 2 +-
144 sci-biology/dipy/metadata.xml | 2 +-
145 sci-biology/discrover/metadata.xml | 2 +-
146 sci-biology/epga/metadata.xml | 2 +-
147 sci-biology/estscan/metadata.xml | 4 ++--
148 sci-biology/exonerate-gff3/metadata.xml | 2 +-
149 sci-biology/fastx_toolkit/metadata.xml | 2 +-
150 sci-biology/ffindex/metadata.xml | 5 +----
151 sci-biology/flexbar/metadata.xml | 1 -
152 sci-biology/freebayes/metadata.xml | 2 +-
153 sci-biology/fsa/metadata.xml | 4 ++--
154 sci-biology/full_lengther_next/metadata.xml | 5 +----
155 sci-biology/gap2caf/metadata.xml | 2 +-
156 sci-biology/gatk/metadata.xml | 2 +-
157 sci-biology/genomeview-bin/metadata.xml | 4 ++--
158 sci-biology/gffutils/metadata.xml | 2 +-
159 sci-biology/glean/metadata.xml | 4 ++--
160 sci-biology/igv/metadata.xml | 2 +-
161 sci-biology/jtreeview/metadata.xml | 2 +-
162 sci-biology/khmer/metadata.xml | 4 ++--
163 sci-biology/lighter/metadata.xml | 2 +-
164 sci-biology/lucy/metadata.xml | 2 +-
165 sci-biology/manatee-igs/metadata.xml | 2 +-
166 sci-biology/manatee-jcvi/metadata.xml | 4 ++--
167 sci-biology/metaseq/metadata.xml | 2 +-
168 sci-biology/minced/metadata.xml | 4 ++--
169 sci-biology/mira/metadata.xml | 2 +-
170 sci-biology/mne-python/metadata.xml | 2 +-
171 sci-biology/mrfast/metadata.xml | 2 +-
172 sci-biology/mrsfast/metadata.xml | 2 +-
173 sci-biology/ncbi-genome-download/metadata.xml | 6 +++---
174 sci-biology/ngsview/metadata.xml | 4 ++--
175 sci-biology/nilearn/metadata.xml | 2 +-
176 sci-biology/nitime/metadata.xml | 2 +-
177 sci-biology/parafly/metadata.xml | 2 +-
178 sci-biology/pb-honey/metadata.xml | 2 +-
179 sci-biology/pb-jelly/metadata.xml | 2 +-
180 sci-biology/perlprimer/metadata.xml | 2 +-
181 sci-biology/picard/metadata.xml | 2 +-
182 sci-biology/psychopy/metadata.xml | 1 -
183 sci-biology/pybedtools/metadata.xml | 2 +-
184 sci-biology/pyfaidx/metadata.xml | 2 +-
185 sci-biology/pysam/metadata.xml | 6 +-----
186 sci-biology/pysurfer/metadata.xml | 2 +-
187 sci-biology/quast/metadata.xml | 2 +-
188 sci-biology/rum/metadata.xml | 4 ++--
189 sci-biology/sabre/metadata.xml | 2 +-
190 sci-biology/sailfish/metadata.xml | 2 +-
191 sci-biology/salmon/metadata.xml | 2 +-
192 sci-biology/samstat/metadata.xml | 2 +-
193 sci-biology/samtools/metadata.xml | 2 +-
194 sci-biology/scaffold_builder/metadata.xml | 4 ++--
195 sci-biology/scbi_blast/metadata.xml | 1 -
196 sci-biology/scbi_fasta/metadata.xml | 1 -
197 sci-biology/scbi_mapreduce/metadata.xml | 1 -
198 sci-biology/scbi_plot/metadata.xml | 1 -
199 sci-biology/screed/metadata.xml | 4 ++--
200 sci-biology/scythe/metadata.xml | 2 +-
201 sci-biology/sga/metadata.xml | 2 +-
202 sci-biology/sickle/metadata.xml | 2 +-
203 sci-biology/skewer-bin/metadata.xml | 2 +-
204 sci-biology/staden/metadata.xml | 2 +-
205 sci-biology/subread/metadata.xml | 2 +-
206 sci-biology/swissknife/metadata.xml | 2 +-
207 sci-biology/trinityrnaseq/metadata.xml | 2 +-
208 sci-biology/trowel/metadata.xml | 4 ++--
209 sci-biology/vcftools/metadata.xml | 2 +-
210 sci-biology/wgs-assembler/metadata.xml | 2 +-
211 sci-chemistry/GromacsWrapper/metadata.xml | 5 +----
212 sci-chemistry/NMRdyn/metadata.xml | 2 +-
213 sci-chemistry/burrow-owl/metadata.xml | 2 +-
214 sci-chemistry/cnsface/metadata.xml | 2 +-
215 sci-chemistry/mdsctk/metadata.xml | 2 +-
216 sci-chemistry/openbabel-java/metadata.xml | 2 +-
217 sci-chemistry/openbabel-perl/metadata.xml | 2 +-
218 sci-chemistry/openbabel-python/metadata.xml | 2 +-
219 sci-chemistry/openbabel-ruby/metadata.xml | 2 +-
220 sci-chemistry/openbabel/metadata.xml | 2 +-
221 sci-chemistry/pesto/metadata.xml | 2 +-
222 sci-chemistry/pymol-plugins-psico/metadata.xml | 2 +-
223 sci-chemistry/pyquante/metadata.xml | 2 +-
224 sci-chemistry/rosetta-tools/metadata.xml | 2 +-
225 sci-electronics/minipro/metadata.xml | 2 +-
226 sci-electronics/player/metadata.xml | 2 +-
227 sci-electronics/stage/metadata.xml | 2 +-
228 sci-electronics/tnt/metadata.xml | 2 +-
229 sci-geosciences/pydap/metadata.xml | 4 ++--
230 sci-geosciences/pydap_handlers_cdms/metadata.xml | 4 ++--
231 sci-geosciences/pydap_handlers_csv/metadata.xml | 4 ++--
232 sci-geosciences/pydap_handlers_hdf5/metadata.xml | 4 ++--
233 sci-geosciences/pydap_handlers_nca/metadata.xml | 4 ++--
234 sci-geosciences/pydap_handlers_netcdf/metadata.xml | 4 ++--
235 sci-geosciences/pydap_handlers_proxy/metadata.xml | 4 ++--
236 sci-geosciences/pydap_handlers_sql/metadata.xml | 4 ++--
237 sci-geosciences/pydap_handlers_sqlite/metadata.xml | 4 ++--
238 sci-geosciences/pydap_responses_kml/metadata.xml | 4 ++--
239 sci-geosciences/pydap_responses_matlab/metadata.xml | 4 ++--
240 sci-geosciences/pydap_responses_netcdf/metadata.xml | 4 ++--
241 sci-geosciences/pydap_responses_wms/metadata.xml | 4 ++--
242 sci-geosciences/pydap_responses_xls/metadata.xml | 4 ++--
243 sci-libs/armadillo/metadata.xml | 4 ++--
244 sci-libs/asl/metadata.xml | 4 ++--
245 sci-libs/atlas/metadata.xml | 4 ++--
246 sci-libs/cgnstools/metadata.xml | 2 +-
247 sci-libs/clblas/metadata.xml | 2 +-
248 sci-libs/clfft/metadata.xml | 2 +-
249 sci-libs/clrng/metadata.xml | 2 +-
250 sci-libs/dealii/metadata.xml | 2 +-
251 sci-libs/elmer-eio/metadata.xml | 4 ++--
252 sci-libs/elmer-hutiter/metadata.xml | 4 ++--
253 sci-libs/framewave/metadata.xml | 2 +-
254 sci-libs/geom/metadata.xml | 2 +-
255 sci-libs/ghmm/metadata.xml | 2 +-
256 sci-libs/htslib/metadata.xml | 2 +-
257 sci-libs/io_lib/metadata.xml | 4 ++--
258 sci-libs/itk/metadata.xml | 4 ++--
259 sci-libs/k3match/metadata.xml | 5 +----
260 sci-libs/lapackpp/metadata.xml | 6 +++---
261 sci-libs/libcgnsoo/metadata.xml | 2 +-
262 sci-libs/libmaus/metadata.xml | 4 ++--
263 sci-libs/libmaus2/metadata.xml | 4 ++--
264 sci-libs/libsc/metadata.xml | 2 +-
265 sci-libs/libsufr/metadata.xml | 2 +-
266 sci-libs/lwpr/metadata.xml | 4 ++--
267 sci-libs/matc/metadata.xml | 4 ++--
268 sci-libs/nibabel/metadata.xml | 2 +-
269 sci-libs/nipy/metadata.xml | 4 ++--
270 sci-libs/nipype/metadata.xml | 2 +-
271 sci-libs/o2scl/metadata.xml | 4 ++--
272 sci-libs/openblas/metadata.xml | 2 +-
273 sci-libs/p4est/metadata.xml | 2 +-
274 sci-libs/pagmo/metadata.xml | 2 +-
275 sci-libs/pg2plplot/metadata.xml | 4 ++--
276 sci-libs/pydicom/metadata.xml | 2 +-
277 sci-libs/rdkit/metadata.xml | 2 +-
278 sci-libs/scikits_image/metadata.xml | 9 +++------
279 sci-libs/spglib/metadata.xml | 4 ++--
280 sci-libs/starparse/metadata.xml | 2 +-
281 sci-libs/symengine/metadata.xml | 8 ++++----
282 sci-libs/vxl/metadata.xml | 2 +-
283 sci-libs/wannier90/metadata.xml | 6 +++---
284 sci-libs/xraylib/metadata.xml | 2 +-
285 sci-libs/zarja/metadata.xml | 4 ++--
286 sci-mathematics/acl2/metadata.xml | 6 +++---
287 sci-mathematics/burrtools/metadata.xml | 4 ++--
288 sci-mathematics/cipi/metadata.xml | 4 ++--
289 sci-mathematics/dolfin/metadata.xml | 2 +-
290 sci-mathematics/gambit/metadata.xml | 6 +++---
291 sci-mathematics/kayali/metadata.xml | 4 ++--
292 sci-mathematics/mdp/metadata.xml | 2 +-
293 sci-mathematics/netgen/metadata.xml | 2 +-
294 sci-mathematics/open-axiom/metadata.xml | 4 ++--
295 sci-mathematics/pulp/metadata.xml | 2 +-
296 sci-mathematics/ufc/metadata.xml | 2 +-
297 sci-mathematics/yorick/metadata.xml | 4 ++--
298 sci-misc/elmer-elmergrid/metadata.xml | 4 ++--
299 sci-misc/elmer-fem/metadata.xml | 4 ++--
300 sci-misc/elmer-front/metadata.xml | 4 ++--
301 sci-misc/elmer-meshgen2d/metadata.xml | 4 ++--
302 sci-misc/elmer-post/metadata.xml | 4 ++--
303 sci-misc/hfst/metadata.xml | 2 +-
304 sci-misc/irstlm/metadata.xml | 4 ++--
305 sci-misc/jwnl/metadata.xml | 4 ++--
306 sci-misc/kaldi/metadata.xml | 2 +-
307 sci-misc/nltk/metadata.xml | 4 ++--
308 sci-misc/opennlp-maxent/metadata.xml | 4 ++--
309 sci-misc/praat/metadata.xml | 2 +-
310 sci-misc/pywordnet/metadata.xml | 4 ++--
311 sci-misc/simx/metadata.xml | 2 +-
312 sci-physics/bigdft/metadata.xml | 6 +++---
313 sci-physics/clip/metadata.xml | 2 +-
314 sci-physics/elk/metadata.xml | 10 +++++-----
315 sci-physics/genfit/metadata.xml | 2 +-
316 sci-physics/quinoa/metadata.xml | 5 +----
317 sci-visualization/forge/metadata.xml | 2 +-
318 sci-visualization/mantid/metadata.xml | 4 ++--
319 sci-visualization/mayavi/metadata.xml | 4 ++--
320 sci-visualization/mricrogl/metadata.xml | 2 +-
321 sci-visualization/mricron/metadata.xml | 2 +-
322 sci-visualization/nodemon/metadata.xml | 4 ++--
323 sci-visualization/surf-ice/metadata.xml | 2 +-
324 sci-visualization/yt/metadata.xml | 2 +-
325 sys-cluster/htcondor/metadata.xml | 4 ++--
326 sys-cluster/modules/metadata.xml | 2 +-
327 sys-cluster/pyslice/metadata.xml | 2 +-
328 www-client/casperjs/metadata.xml | 2 +-
329 x11-misc/envytools/metadata.xml | 2 +-
330 318 files changed, 421 insertions(+), 513 deletions(-)
331
332 diff --git a/app-benchmarks/btl/metadata.xml b/app-benchmarks/btl/metadata.xml
333 index 1276dc69c..0e64e0503 100644
334 --- a/app-benchmarks/btl/metadata.xml
335 +++ b/app-benchmarks/btl/metadata.xml
336 @@ -1,4 +1,4 @@
337 -<?xml version="1.0" encoding="UTF-8"?>
338 +<?xml version='1.0' encoding='UTF-8'?>
339 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
340 <pkgmetadata>
341 <maintainer type="person">
342
343 diff --git a/app-benchmarks/numbench/metadata.xml b/app-benchmarks/numbench/metadata.xml
344 index 810ffee12..91ead3a68 100644
345 --- a/app-benchmarks/numbench/metadata.xml
346 +++ b/app-benchmarks/numbench/metadata.xml
347 @@ -1,4 +1,4 @@
348 -<?xml version="1.0" encoding="UTF-8"?>
349 +<?xml version='1.0' encoding='UTF-8'?>
350 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
351 <pkgmetadata>
352 <maintainer type="person">
353
354 diff --git a/app-doc/root-docs/metadata.xml b/app-doc/root-docs/metadata.xml
355 index 47caabb1d..27aa72d21 100644
356 --- a/app-doc/root-docs/metadata.xml
357 +++ b/app-doc/root-docs/metadata.xml
358 @@ -1,4 +1,4 @@
359 -<?xml version="1.0" encoding="UTF-8"?>
360 +<?xml version='1.0' encoding='UTF-8'?>
361 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
362 <pkgmetadata>
363 <maintainer type="person">
364 @@ -19,7 +19,4 @@
365 <flag name="math">Provide all math related documentation</flag>
366 <flag name="metric">Default to A4 paper size and metric measurement. Letter will be used otherwise</flag>
367 </use>
368 - <upstream>
369 - <remote-id type="sourceforge">tmva</remote-id>
370 - </upstream>
371 </pkgmetadata>
372
373 diff --git a/app-vim/vim-gromacs/metadata.xml b/app-vim/vim-gromacs/metadata.xml
374 index 704b2eb0e..4a5c9ab9d 100644
375 --- a/app-vim/vim-gromacs/metadata.xml
376 +++ b/app-vim/vim-gromacs/metadata.xml
377 @@ -1,4 +1,4 @@
378 -<?xml version="1.0" encoding="UTF-8"?>
379 +<?xml version='1.0' encoding='UTF-8'?>
380 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
381 <pkgmetadata>
382 <maintainer type="project">
383 @@ -7,7 +7,7 @@
384 </maintainer>
385 <longdescription lang="en">
386 VIM syntax plugin which provides syntax highlighting for the gromacs files.
387 -</longdescription>
388 + </longdescription>
389 <upstream>
390 <remote-id type="github">HubLot/vim-gromacs</remote-id>
391 </upstream>
392
393 diff --git a/dev-cpp/eigen/metadata.xml b/dev-cpp/eigen/metadata.xml
394 index 6d5cb6666..cfb88d051 100644
395 --- a/dev-cpp/eigen/metadata.xml
396 +++ b/dev-cpp/eigen/metadata.xml
397 @@ -1,4 +1,4 @@
398 -<?xml version="1.0" encoding="UTF-8"?>
399 +<?xml version='1.0' encoding='UTF-8'?>
400 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
401 <pkgmetadata>
402 <maintainer type="project">
403
404 diff --git a/dev-cpp/icnc/metadata.xml b/dev-cpp/icnc/metadata.xml
405 index 4ab9fc666..1b36049c6 100644
406 --- a/dev-cpp/icnc/metadata.xml
407 +++ b/dev-cpp/icnc/metadata.xml
408 @@ -1,11 +1,8 @@
409 -<?xml version="1.0" encoding="UTF-8"?>
410 +<?xml version='1.0' encoding='UTF-8'?>
411 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
412 <pkgmetadata>
413 <maintainer type="person">
414 <email>ottxor@g.o</email>
415 <name>Christoph Junghans</name>
416 </maintainer>
417 - <upstream>
418 - <remote-id type="github">icnc/icnc</remote-id>
419 - </upstream>
420 </pkgmetadata>
421
422 diff --git a/dev-java/gluegen/metadata.xml b/dev-java/gluegen/metadata.xml
423 index 9fc3e6b55..fa1706ad0 100644
424 --- a/dev-java/gluegen/metadata.xml
425 +++ b/dev-java/gluegen/metadata.xml
426 @@ -1,4 +1,4 @@
427 -<?xml version="1.0" encoding="UTF-8"?>
428 +<?xml version='1.0' encoding='UTF-8'?>
429 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
430 <pkgmetadata>
431 <maintainer type="project">
432 @@ -15,7 +15,7 @@ generates interfaces. It has the ability to perform significant transformations
433 on the IR before glue code emission. GlueGen is currently powerful enough to
434 bind even low-level APIs such as the Java Native Interface (JNI) and the AWT
435 Native Interface (JAWT) back up to the Java programming language.
436 -</longdescription>
437 + </longdescription>
438 <upstream>
439 <remote-id type="github">sgothel/gluegen</remote-id>
440 </upstream>
441
442 diff --git a/dev-java/htsjdk/metadata.xml b/dev-java/htsjdk/metadata.xml
443 index 6c001f352..feb7e6155 100644
444 --- a/dev-java/htsjdk/metadata.xml
445 +++ b/dev-java/htsjdk/metadata.xml
446 @@ -10,7 +10,6 @@
447 <name>Gentoo Biology Project</name>
448 </maintainer>
449 <upstream>
450 - <remote-id type="sourceforge">picard</remote-id>
451 <remote-id type="github">samtools/htsjdk</remote-id>
452 </upstream>
453 </pkgmetadata>
454
455 diff --git a/dev-java/jeuclid-core/metadata.xml b/dev-java/jeuclid-core/metadata.xml
456 index 5e60bad07..5e72e0411 100644
457 --- a/dev-java/jeuclid-core/metadata.xml
458 +++ b/dev-java/jeuclid-core/metadata.xml
459 @@ -1,4 +1,4 @@
460 -<?xml version="1.0" encoding="UTF-8"?>
461 +<?xml version='1.0' encoding='UTF-8'?>
462 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
463 <pkgmetadata>
464 <maintainer type="project">
465 @@ -14,7 +14,7 @@
466 * A component for Apache Cocoon
467 This package contains the basic JEuclid rendering and document
468 handling classes.
469 -</longdescription>
470 + </longdescription>
471 <upstream>
472 <remote-id type="sourceforge">jeuclid</remote-id>
473 </upstream>
474
475 diff --git a/dev-java/jogl/metadata.xml b/dev-java/jogl/metadata.xml
476 index 6a8c7046c..88a073443 100644
477 --- a/dev-java/jogl/metadata.xml
478 +++ b/dev-java/jogl/metadata.xml
479 @@ -1,4 +1,4 @@
480 -<?xml version="1.0" encoding="UTF-8"?>
481 +<?xml version='1.0' encoding='UTF-8'?>
482 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
483 <pkgmetadata>
484 <maintainer type="project">
485 @@ -8,7 +8,7 @@
486 <longdescription lang="en">
487 JOGL provides Java with a Binding for the OpenGL® API (JSR-231), and is designed
488 to provide hardware-supported 3D graphics to applications written in Java.
489 -</longdescription>
490 + </longdescription>
491 <use>
492 <flag name="cg">Enable NVidia Cg binding.</flag>
493 </use>
494
495 diff --git a/dev-lang/conceptual/metadata.xml b/dev-lang/conceptual/metadata.xml
496 index bf09c654c..9766ecb5d 100644
497 --- a/dev-lang/conceptual/metadata.xml
498 +++ b/dev-lang/conceptual/metadata.xml
499 @@ -1,4 +1,4 @@
500 -<?xml version="1.0" encoding="UTF-8"?>
501 +<?xml version='1.0' encoding='UTF-8'?>
502 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
503 <pkgmetadata>
504 <maintainer type="person">
505
506 diff --git a/dev-lang/terra/metadata.xml b/dev-lang/terra/metadata.xml
507 index 7fa6fee0b..3b7daac27 100644
508 --- a/dev-lang/terra/metadata.xml
509 +++ b/dev-lang/terra/metadata.xml
510 @@ -1,4 +1,4 @@
511 -<?xml version="1.0" encoding="UTF-8"?>
512 +<?xml version='1.0' encoding='UTF-8'?>
513 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
514 <pkgmetadata>
515 <maintainer type="person">
516
517 diff --git a/dev-libs/boost-compute/metadata.xml b/dev-libs/boost-compute/metadata.xml
518 index f46139c8d..50b082f43 100644
519 --- a/dev-libs/boost-compute/metadata.xml
520 +++ b/dev-libs/boost-compute/metadata.xml
521 @@ -1,4 +1,4 @@
522 -<?xml version="1.0" encoding="UTF-8"?>
523 +<?xml version='1.0' encoding='UTF-8'?>
524 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
525 <pkgmetadata>
526 <maintainer type="person">
527
528 diff --git a/dev-libs/libcuda/metadata.xml b/dev-libs/libcuda/metadata.xml
529 index 1577ca222..137a77828 100644
530 --- a/dev-libs/libcuda/metadata.xml
531 +++ b/dev-libs/libcuda/metadata.xml
532 @@ -1,4 +1,4 @@
533 -<?xml version="1.0" encoding="UTF-8"?>
534 +<?xml version='1.0' encoding='UTF-8'?>
535 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
536 <pkgmetadata>
537 <maintainer type="person">
538
539 diff --git a/dev-libs/libgdev/metadata.xml b/dev-libs/libgdev/metadata.xml
540 index 1577ca222..137a77828 100644
541 --- a/dev-libs/libgdev/metadata.xml
542 +++ b/dev-libs/libgdev/metadata.xml
543 @@ -1,4 +1,4 @@
544 -<?xml version="1.0" encoding="UTF-8"?>
545 +<?xml version='1.0' encoding='UTF-8'?>
546 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
547 <pkgmetadata>
548 <maintainer type="person">
549
550 diff --git a/dev-libs/utf8proc/metadata.xml b/dev-libs/utf8proc/metadata.xml
551 index e254e530d..bea4b0d50 100644
552 --- a/dev-libs/utf8proc/metadata.xml
553 +++ b/dev-libs/utf8proc/metadata.xml
554 @@ -1,4 +1,4 @@
555 -<?xml version="1.0" encoding="UTF-8"?>
556 +<?xml version='1.0' encoding='UTF-8'?>
557 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
558 <pkgmetadata>
559 <maintainer type="project">
560 @@ -13,7 +13,7 @@
561 converts for example the characters “Hyphen” (U+2010), “Minus”
562 (U+2212) and “Hyphen-Minus” (U+002D, ASCII Minus) all into the ASCII
563 minus sign, to make them equal for comparisons.
564 -</longdescription>
565 + </longdescription>
566 <upstream>
567 <remote-id type="github">JuliaLang/utf8proc</remote-id>
568 </upstream>
569
570 diff --git a/dev-ml/lacaml/metadata.xml b/dev-ml/lacaml/metadata.xml
571 index e5248b9ad..d11df4158 100644
572 --- a/dev-ml/lacaml/metadata.xml
573 +++ b/dev-ml/lacaml/metadata.xml
574 @@ -1,4 +1,4 @@
575 -<?xml version="1.0" encoding="UTF-8"?>
576 +<?xml version='1.0' encoding='UTF-8'?>
577 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
578 <pkgmetadata>
579 <maintainer type="project">
580
581 diff --git a/dev-perl/BTLib/metadata.xml b/dev-perl/BTLib/metadata.xml
582 index c928da25a..aa38b1c12 100644
583 --- a/dev-perl/BTLib/metadata.xml
584 +++ b/dev-perl/BTLib/metadata.xml
585 @@ -1,4 +1,4 @@
586 -<?xml version="1.0" encoding="UTF-8"?>
587 +<?xml version='1.0' encoding='UTF-8'?>
588 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
589 <pkgmetadata>
590 <maintainer type="project">
591
592 diff --git a/dev-perl/opal-client/metadata.xml b/dev-perl/opal-client/metadata.xml
593 index 5f29f0643..1cfc2883a 100644
594 --- a/dev-perl/opal-client/metadata.xml
595 +++ b/dev-perl/opal-client/metadata.xml
596 @@ -1,4 +1,4 @@
597 -<?xml version="1.0" encoding="UTF-8"?>
598 +<?xml version='1.0' encoding='UTF-8'?>
599 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
600 <pkgmetadata>
601 <maintainer type="project">
602
603 diff --git a/dev-python/PeakUtils/metadata.xml b/dev-python/PeakUtils/metadata.xml
604 index a4c17d458..32d3251d5 100644
605 --- a/dev-python/PeakUtils/metadata.xml
606 +++ b/dev-python/PeakUtils/metadata.xml
607 @@ -13,7 +13,7 @@
608 increase the resolution of the peak detection.
609 </longdescription>
610 <upstream>
611 - <remote-id type="pypi">PeakUtils</remote-id>
612 <remote-id type="bitbucket">lucashnegri/peakutils</remote-id>
613 + <remote-id type="pypi">PeakUtils</remote-id>
614 </upstream>
615 </pkgmetadata>
616
617 diff --git a/dev-python/PyVISA-py/metadata.xml b/dev-python/PyVISA-py/metadata.xml
618 index be11d627d..26acc9198 100644
619 --- a/dev-python/PyVISA-py/metadata.xml
620 +++ b/dev-python/PyVISA-py/metadata.xml
621 @@ -1,4 +1,4 @@
622 -<?xml version="1.0" encoding="UTF-8"?>
623 +<?xml version='1.0' encoding='UTF-8'?>
624 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
625 <pkgmetadata>
626 <maintainer type="person">
627 @@ -14,7 +14,7 @@
628 Instrument Software Architecture" (VISA) in pure Python.
629 </longdescription>
630 <upstream>
631 - <remote-id type="pypi">PyVISA-py</remote-id>
632 <remote-id type="github">hgrecco/pyvisa-py</remote-id>
633 + <remote-id type="pypi">PyVISA-py</remote-id>
634 </upstream>
635 </pkgmetadata>
636
637 diff --git a/dev-python/PyVISA/metadata.xml b/dev-python/PyVISA/metadata.xml
638 index c7529e22f..19e1a51ca 100644
639 --- a/dev-python/PyVISA/metadata.xml
640 +++ b/dev-python/PyVISA/metadata.xml
641 @@ -1,4 +1,4 @@
642 -<?xml version="1.0" encoding="UTF-8"?>
643 +<?xml version='1.0' encoding='UTF-8'?>
644 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
645 <pkgmetadata>
646 <maintainer type="person">
647 @@ -15,7 +15,7 @@
648 test equipment via GPIB, RS232, Ethernet or USB.
649 </longdescription>
650 <upstream>
651 + <remote-id type="github">hgrecco/pyvisa-py</remote-id>
652 <remote-id type="pypi">PyVISA</remote-id>
653 - <remote-id type="github">hgrecco/pyvisa</remote-id>
654 </upstream>
655 </pkgmetadata>
656
657 diff --git a/dev-python/RecSQL/metadata.xml b/dev-python/RecSQL/metadata.xml
658 index c0ad26b50..355e9a516 100644
659 --- a/dev-python/RecSQL/metadata.xml
660 +++ b/dev-python/RecSQL/metadata.xml
661 @@ -1,4 +1,4 @@
662 -<?xml version="1.0" encoding="UTF-8"?>
663 +<?xml version='1.0' encoding='UTF-8'?>
664 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
665 <pkgmetadata>
666 <maintainer type="person">
667 @@ -9,7 +9,4 @@
668 <email>sci@g.o</email>
669 <name>Gentoo Science Project</name>
670 </maintainer>
671 - <upstream>
672 - <remote-id type="github">orbeckst/RecSQL</remote-id>
673 - </upstream>
674 </pkgmetadata>
675
676 diff --git a/dev-python/arrayfire-python/metadata.xml b/dev-python/arrayfire-python/metadata.xml
677 index 18b1016e2..12f0d0584 100644
678 --- a/dev-python/arrayfire-python/metadata.xml
679 +++ b/dev-python/arrayfire-python/metadata.xml
680 @@ -1,4 +1,4 @@
681 -<?xml version="1.0" encoding="UTF-8"?>
682 +<?xml version='1.0' encoding='UTF-8'?>
683 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
684 <pkgmetadata>
685 <maintainer type="person">
686
687 diff --git a/dev-python/astropy-helpers/metadata.xml b/dev-python/astropy-helpers/metadata.xml
688 index 9dffe2edc..68d40928a 100644
689 --- a/dev-python/astropy-helpers/metadata.xml
690 +++ b/dev-python/astropy-helpers/metadata.xml
691 @@ -1,4 +1,4 @@
692 -<?xml version="1.0" encoding="UTF-8"?>
693 +<?xml version='1.0' encoding='UTF-8'?>
694 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
695 <pkgmetadata>
696 <maintainer type="project">
697 @@ -10,7 +10,6 @@
698 that may be used by other projects.
699 </longdescription>
700 <upstream>
701 - <remote-id type="pypi">astropy-helpers</remote-id>
702 <remote-id type="github">astropy/astropy-helpers</remote-id>
703 </upstream>
704 </pkgmetadata>
705
706 diff --git a/dev-python/astroquery/metadata.xml b/dev-python/astroquery/metadata.xml
707 index 224276aae..84e169547 100644
708 --- a/dev-python/astroquery/metadata.xml
709 +++ b/dev-python/astroquery/metadata.xml
710 @@ -1,4 +1,4 @@
711 -<?xml version="1.0" encoding="UTF-8"?>
712 +<?xml version='1.0' encoding='UTF-8'?>
713 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
714 <pkgmetadata>
715 <maintainer type="project">
716 @@ -11,7 +11,6 @@
717 to support many services with a uniform API.
718 </longdescription>
719 <upstream>
720 - <remote-id type="pypi">astroquery</remote-id>
721 <remote-id type="github">astropy/astroquery</remote-id>
722 </upstream>
723 </pkgmetadata>
724
725 diff --git a/dev-python/brewer2mpl/metadata.xml b/dev-python/brewer2mpl/metadata.xml
726 index 4f2cd15bf..42211a68b 100644
727 --- a/dev-python/brewer2mpl/metadata.xml
728 +++ b/dev-python/brewer2mpl/metadata.xml
729 @@ -1,4 +1,4 @@
730 -<?xml version="1.0" encoding="UTF-8"?>
731 +<?xml version='1.0' encoding='UTF-8'?>
732 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
733 <pkgmetadata>
734 <maintainer type="person">
735 @@ -16,7 +16,7 @@
736 ships with brewer2mpl so no internet connection is required.
737 </longdescription>
738 <upstream>
739 - <remote-id type="pypi">brewer2mpl</remote-id>
740 <remote-id type="github">jiffyclub/brewer2mpl</remote-id>
741 + <remote-id type="pypi">brewer2mpl</remote-id>
742 </upstream>
743 </pkgmetadata>
744
745 diff --git a/dev-python/ccdproc/metadata.xml b/dev-python/ccdproc/metadata.xml
746 index a254a5734..e634ec8d8 100644
747 --- a/dev-python/ccdproc/metadata.xml
748 +++ b/dev-python/ccdproc/metadata.xml
749 @@ -1,4 +1,4 @@
750 -<?xml version="1.0" encoding="UTF-8"?>
751 +<?xml version='1.0' encoding='UTF-8'?>
752 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
753 <pkgmetadata>
754 <maintainer type="project">
755 @@ -11,7 +11,6 @@
756 and bad pixel tracking through the reduction steps.
757 </longdescription>
758 <upstream>
759 - <remote-id type="pypi">ccdproc</remote-id>
760 <remote-id type="github">astropy/ccdproc</remote-id>
761 </upstream>
762 </pkgmetadata>
763
764 diff --git a/dev-python/coards/metadata.xml b/dev-python/coards/metadata.xml
765 index 34578d15d..77d8a36e7 100644
766 --- a/dev-python/coards/metadata.xml
767 +++ b/dev-python/coards/metadata.xml
768 @@ -1,4 +1,4 @@
769 -<?xml version="1.0" encoding="UTF-8"?>
770 +<?xml version='1.0' encoding='UTF-8'?>
771 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
772 <pkgmetadata>
773 <maintainer type="person">
774
775 diff --git a/dev-python/dijitso/metadata.xml b/dev-python/dijitso/metadata.xml
776 index 489293405..cb17acf08 100644
777 --- a/dev-python/dijitso/metadata.xml
778 +++ b/dev-python/dijitso/metadata.xml
779 @@ -1,4 +1,4 @@
780 -<?xml version="1.0" encoding="UTF-8"?>
781 +<?xml version='1.0' encoding='UTF-8'?>
782 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
783 <pkgmetadata>
784 <maintainer type="project">
785 @@ -12,7 +12,6 @@
786 library, and thus do not need wrapping in a nice Python interface.
787 </longdescription>
788 <upstream>
789 - <remote-id type="bitbucket">fenics-project/ffc</remote-id>
790 - <remote-id type="launchpad">ffc</remote-id>
791 + <remote-id type="bitbucket">fenics-project/dijitso</remote-id>
792 </upstream>
793 </pkgmetadata>
794
795 diff --git a/dev-python/dimensionful/metadata.xml b/dev-python/dimensionful/metadata.xml
796 index 310bd052e..c156f9144 100644
797 --- a/dev-python/dimensionful/metadata.xml
798 +++ b/dev-python/dimensionful/metadata.xml
799 @@ -1,4 +1,4 @@
800 -<?xml version="1.0" encoding="UTF-8"?>
801 +<?xml version='1.0' encoding='UTF-8'?>
802 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
803 <pkgmetadata>
804 <maintainer type="person">
805
806 diff --git a/dev-python/ffc/metadata.xml b/dev-python/ffc/metadata.xml
807 index c18ab8720..35bb1f59e 100644
808 --- a/dev-python/ffc/metadata.xml
809 +++ b/dev-python/ffc/metadata.xml
810 @@ -1,4 +1,4 @@
811 -<?xml version="1.0" encoding="UTF-8"?>
812 +<?xml version='1.0' encoding='UTF-8'?>
813 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
814 <pkgmetadata>
815 <maintainer type="project">
816 @@ -15,6 +15,5 @@
817 </longdescription>
818 <upstream>
819 <remote-id type="bitbucket">fenics-project/ffc</remote-id>
820 - <remote-id type="launchpad">ffc</remote-id>
821 </upstream>
822 </pkgmetadata>
823
824 diff --git a/dev-python/ffnet/metadata.xml b/dev-python/ffnet/metadata.xml
825 index 81dcc789e..84e07f038 100644
826 --- a/dev-python/ffnet/metadata.xml
827 +++ b/dev-python/ffnet/metadata.xml
828 @@ -13,7 +13,6 @@
829 <flag name="matplotlib">Use matplotlib for drawing</flag>
830 </use>
831 <upstream>
832 - <remote-id type="github">mrkwjc/ffnet</remote-id>
833 <remote-id type="pypi">ffnet</remote-id>
834 <remote-id type="sourceforge">ffnet</remote-id>
835 </upstream>
836
837 diff --git a/dev-python/ffnetui/metadata.xml b/dev-python/ffnetui/metadata.xml
838 index 50cd8d0c5..fe996f826 100644
839 --- a/dev-python/ffnetui/metadata.xml
840 +++ b/dev-python/ffnetui/metadata.xml
841 @@ -9,7 +9,6 @@
842 GUI for ffnet - feed forward neural network for python
843 </longdescription>
844 <upstream>
845 - <remote-id type="github">mrkwjc/ffnetui</remote-id>
846 <remote-id type="pypi">ffnetui</remote-id>
847 <remote-id type="sourceforge">ffnet</remote-id>
848 </upstream>
849
850 diff --git a/dev-python/fiat/metadata.xml b/dev-python/fiat/metadata.xml
851 index c28ae4e03..c3aad9140 100644
852 --- a/dev-python/fiat/metadata.xml
853 +++ b/dev-python/fiat/metadata.xml
854 @@ -1,4 +1,4 @@
855 -<?xml version="1.0" encoding="UTF-8"?>
856 +<?xml version='1.0' encoding='UTF-8'?>
857 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
858 <pkgmetadata>
859 <maintainer type="project">
860 @@ -17,6 +17,5 @@
861 </longdescription>
862 <upstream>
863 <remote-id type="bitbucket">fenics-project/fiat</remote-id>
864 - <remote-id type="launchpad">fiat</remote-id>
865 </upstream>
866 </pkgmetadata>
867
868 diff --git a/dev-python/gammapy/metadata.xml b/dev-python/gammapy/metadata.xml
869 index 413f49bd4..9ab0a8d12 100644
870 --- a/dev-python/gammapy/metadata.xml
871 +++ b/dev-python/gammapy/metadata.xml
872 @@ -1,4 +1,4 @@
873 -<?xml version="1.0" encoding="UTF-8"?>
874 +<?xml version='1.0' encoding='UTF-8'?>
875 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
876 <pkgmetadata>
877 <maintainer type="project">
878 @@ -11,7 +11,6 @@
879 H.E.S.S, and CTA in primarily Galactic plane survey studies.
880 </longdescription>
881 <upstream>
882 - <remote-id type="pypi">gammapy</remote-id>
883 <remote-id type="github">gammapy/gammapy</remote-id>
884 </upstream>
885 </pkgmetadata>
886
887 diff --git a/dev-python/hdf5storage/metadata.xml b/dev-python/hdf5storage/metadata.xml
888 index 320a9f946..8ce73fe8c 100644
889 --- a/dev-python/hdf5storage/metadata.xml
890 +++ b/dev-python/hdf5storage/metadata.xml
891 @@ -1,4 +1,4 @@
892 -<?xml version="1.0" encoding="UTF-8"?>
893 +<?xml version='1.0' encoding='UTF-8'?>
894 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
895 <pkgmetadata>
896 <maintainer type="person">
897 @@ -17,7 +17,7 @@
898 extension and some extra meta-data.
899 </longdescription>
900 <upstream>
901 - <remote-id type="pypi">hdf5storage</remote-id>
902 <remote-id type="github">frejanordsiek/hdf5storage</remote-id>
903 + <remote-id type="pypi">hdf5storage</remote-id>
904 </upstream>
905 </pkgmetadata>
906
907 diff --git a/dev-python/imageutils/metadata.xml b/dev-python/imageutils/metadata.xml
908 index 90af04221..8f422b20a 100644
909 --- a/dev-python/imageutils/metadata.xml
910 +++ b/dev-python/imageutils/metadata.xml
911 @@ -1,4 +1,4 @@
912 -<?xml version="1.0" encoding="UTF-8"?>
913 +<?xml version='1.0' encoding='UTF-8'?>
914 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
915 <pkgmetadata>
916 <maintainer type="project">
917 @@ -11,7 +11,6 @@
918 package before the 1.0 release.
919 </longdescription>
920 <upstream>
921 - <remote-id type="pypi">imageutils</remote-id>
922 <remote-id type="github">astropy/imageutils</remote-id>
923 </upstream>
924 </pkgmetadata>
925
926 diff --git a/dev-python/instant/metadata.xml b/dev-python/instant/metadata.xml
927 index b3c7ae99c..0aa8827a4 100644
928 --- a/dev-python/instant/metadata.xml
929 +++ b/dev-python/instant/metadata.xml
930 @@ -1,4 +1,4 @@
931 -<?xml version="1.0" encoding="UTF-8"?>
932 +<?xml version='1.0' encoding='UTF-8'?>
933 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
934 <pkgmetadata>
935 <maintainer type="project">
936 @@ -12,6 +12,5 @@
937 </longdescription>
938 <upstream>
939 <remote-id type="bitbucket">fenics-project/instant</remote-id>
940 - <remote-id type="launchpad">instant</remote-id>
941 </upstream>
942 </pkgmetadata>
943
944 diff --git a/dev-python/ipykernel/metadata.xml b/dev-python/ipykernel/metadata.xml
945 index 973783bf3..d87bc07db 100644
946 --- a/dev-python/ipykernel/metadata.xml
947 +++ b/dev-python/ipykernel/metadata.xml
948 @@ -1,4 +1,4 @@
949 -<?xml version="1.0" encoding="UTF-8"?>
950 +<?xml version='1.0' encoding='UTF-8'?>
951 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
952 <pkgmetadata>
953 <maintainer type="project">
954 @@ -9,7 +9,6 @@
955 This package provides the IPython kernel for Jupyter.
956 </longdescription>
957 <upstream>
958 - <remote-id type="pypi">ipykernel</remote-id>
959 <remote-id type="github">ipython/ipykernel</remote-id>
960 </upstream>
961 </pkgmetadata>
962
963 diff --git a/dev-python/ipyparallel/metadata.xml b/dev-python/ipyparallel/metadata.xml
964 index 47348926e..bd6c5c2e0 100644
965 --- a/dev-python/ipyparallel/metadata.xml
966 +++ b/dev-python/ipyparallel/metadata.xml
967 @@ -1,4 +1,4 @@
968 -<?xml version="1.0" encoding="UTF-8"?>
969 +<?xml version='1.0' encoding='UTF-8'?>
970 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
971 <pkgmetadata>
972 <maintainer type="project">
973 @@ -9,7 +9,4 @@
974 Interactive Parallel Computing with IPython.
975 ipyparallel is the new home of IPython.parallel.
976 </longdescription>
977 - <upstream>
978 - <remote-id type="pypi">ipyparallel</remote-id>
979 - </upstream>
980 </pkgmetadata>
981
982 diff --git a/dev-python/ipython_genutils/metadata.xml b/dev-python/ipython_genutils/metadata.xml
983 index c9deb0b09..52164c08d 100644
984 --- a/dev-python/ipython_genutils/metadata.xml
985 +++ b/dev-python/ipython_genutils/metadata.xml
986 @@ -1,4 +1,4 @@
987 -<?xml version="1.0" encoding="UTF-8"?>
988 +<?xml version='1.0' encoding='UTF-8'?>
989 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
990 <pkgmetadata>
991 <maintainer type="project">
992 @@ -12,7 +12,6 @@
993 go away. No packages outside IPython/Jupyter should depend on it.
994 </longdescription>
995 <upstream>
996 - <remote-id type="pypi">ipython_genutils</remote-id>
997 <remote-id type="github">ipython/ipython_genutils</remote-id>
998 </upstream>
999 </pkgmetadata>
1000
1001 diff --git a/dev-python/ipywidgets/metadata.xml b/dev-python/ipywidgets/metadata.xml
1002 index 8bc51992f..4495ebb74 100644
1003 --- a/dev-python/ipywidgets/metadata.xml
1004 +++ b/dev-python/ipywidgets/metadata.xml
1005 @@ -1,4 +1,4 @@
1006 -<?xml version="1.0" encoding="UTF-8"?>
1007 +<?xml version='1.0' encoding='UTF-8'?>
1008 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1009 <pkgmetadata>
1010 <maintainer type="project">
1011
1012 diff --git a/dev-python/jupyter_client/metadata.xml b/dev-python/jupyter_client/metadata.xml
1013 index 53a086c17..fbd1af5b5 100644
1014 --- a/dev-python/jupyter_client/metadata.xml
1015 +++ b/dev-python/jupyter_client/metadata.xml
1016 @@ -1,4 +1,4 @@
1017 -<?xml version="1.0" encoding="UTF-8"?>
1018 +<?xml version='1.0' encoding='UTF-8'?>
1019 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1020 <pkgmetadata>
1021 <maintainer type="project">
1022 @@ -11,7 +11,4 @@
1023 kernels. It also provides the jupyter kernelspec entrypoint for
1024 installing kernelspecs for use with Jupyter frontends.
1025 </longdescription>
1026 - <upstream>
1027 - <remote-id type="pypi">jupyter_client</remote-id>
1028 - </upstream>
1029 </pkgmetadata>
1030
1031 diff --git a/dev-python/jupyter_console/metadata.xml b/dev-python/jupyter_console/metadata.xml
1032 index 6fc0fef28..a2b19aeaf 100644
1033 --- a/dev-python/jupyter_console/metadata.xml
1034 +++ b/dev-python/jupyter_console/metadata.xml
1035 @@ -1,4 +1,4 @@
1036 -<?xml version="1.0" encoding="UTF-8"?>
1037 +<?xml version='1.0' encoding='UTF-8'?>
1038 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1039 <pkgmetadata>
1040 <maintainer type="project">
1041 @@ -9,7 +9,4 @@
1042 A terminal-based console frontend for Jupyter kernels.
1043 This code is based on the single-process IPython terminal.
1044 </longdescription>
1045 - <upstream>
1046 - <remote-id type="pypi">jupyter_console</remote-id>
1047 - </upstream>
1048 </pkgmetadata>
1049
1050 diff --git a/dev-python/jupyter_core/metadata.xml b/dev-python/jupyter_core/metadata.xml
1051 index 467bb37a5..88e71aa2c 100644
1052 --- a/dev-python/jupyter_core/metadata.xml
1053 +++ b/dev-python/jupyter_core/metadata.xml
1054 @@ -1,4 +1,4 @@
1055 -<?xml version="1.0" encoding="UTF-8"?>
1056 +<?xml version='1.0' encoding='UTF-8'?>
1057 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1058 <pkgmetadata>
1059 <maintainer type="project">
1060 @@ -10,7 +10,4 @@
1061 This package contains base application classes and configuration
1062 inhertited by other projects. It doesn't do much on its own.
1063 </longdescription>
1064 - <upstream>
1065 - <remote-id type="pypi">jupyter_core</remote-id>
1066 - </upstream>
1067 </pkgmetadata>
1068
1069 diff --git a/dev-python/matlab_wrapper/metadata.xml b/dev-python/matlab_wrapper/metadata.xml
1070 index bad1f381d..38df0353a 100644
1071 --- a/dev-python/matlab_wrapper/metadata.xml
1072 +++ b/dev-python/matlab_wrapper/metadata.xml
1073 @@ -1,4 +1,4 @@
1074 -<?xml version="1.0" encoding="UTF-8"?>
1075 +<?xml version='1.0' encoding='UTF-8'?>
1076 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1077 <pkgmetadata>
1078 <maintainer type="person">
1079 @@ -17,7 +17,7 @@
1080 as a regular Python module.
1081 </longdescription>
1082 <upstream>
1083 - <remote-id type="pypi">matlab_wrapper</remote-id>
1084 <remote-id type="github">mrkrd/matlab_wrapper</remote-id>
1085 + <remote-id type="pypi">matlab_wrapper</remote-id>
1086 </upstream>
1087 </pkgmetadata>
1088
1089 diff --git a/dev-python/matplotlib-venn/metadata.xml b/dev-python/matplotlib-venn/metadata.xml
1090 index 8401ce8b5..cae4c83f9 100644
1091 --- a/dev-python/matplotlib-venn/metadata.xml
1092 +++ b/dev-python/matplotlib-venn/metadata.xml
1093 @@ -6,7 +6,6 @@
1094 <name>Gentoo Science Project</name>
1095 </maintainer>
1096 <upstream>
1097 - <remote-id type="github">matplotlib-venn</remote-id>
1098 <remote-id type="pypi">matplotlib-venn</remote-id>
1099 </upstream>
1100 </pkgmetadata>
1101
1102 diff --git a/dev-python/matplotlib2tikz/metadata.xml b/dev-python/matplotlib2tikz/metadata.xml
1103 index 9c08eac01..9dc28cbe0 100644
1104 --- a/dev-python/matplotlib2tikz/metadata.xml
1105 +++ b/dev-python/matplotlib2tikz/metadata.xml
1106 @@ -1,4 +1,4 @@
1107 -<?xml version="1.0" encoding="UTF-8"?>
1108 +<?xml version='1.0' encoding='UTF-8'?>
1109 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1110 <pkgmetadata>
1111 <maintainer type="person">
1112 @@ -12,6 +12,5 @@
1113 <longdescription>matplotlib2tikz is a Python tool for converting matplotlib figures into PGFPlots (TikZ) figures like for native inclusion into LaTeX documents. The output of matplotlib2tikz is in PGFPlots, a LaTeX library that sits on top of TikZ and describes graphs in terms of axes, data etc. Consequently, the output of matplotlib2tikz retains more information, can be more easily understood, and is more easily editable than raw TikZ output.</longdescription>
1114 <upstream>
1115 <remote-id type="github">nschloe/matplotlib2tikz</remote-id>
1116 - <remote-id type="pypi">matplotlib2tikz</remote-id>
1117 </upstream>
1118 </pkgmetadata>
1119
1120 diff --git a/dev-python/matrix2latex/metadata.xml b/dev-python/matrix2latex/metadata.xml
1121 index b8ecd8dc9..e8cce6c4b 100644
1122 --- a/dev-python/matrix2latex/metadata.xml
1123 +++ b/dev-python/matrix2latex/metadata.xml
1124 @@ -1,4 +1,4 @@
1125 -<?xml version="1.0" encoding="UTF-8"?>
1126 +<?xml version='1.0' encoding='UTF-8'?>
1127 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1128 <pkgmetadata>
1129 <maintainer type="project">
1130 @@ -11,6 +11,6 @@
1131 LATeX documents and compile them.
1132 </longdescription>
1133 <upstream>
1134 - <remote-id type="github">matrix2latex</remote-id>
1135 + <remote-id type="github">TheChymera/matrix2latex</remote-id>
1136 </upstream>
1137 </pkgmetadata>
1138
1139 diff --git a/dev-python/meshpy/metadata.xml b/dev-python/meshpy/metadata.xml
1140 index d5be6ad0b..18f3e3730 100644
1141 --- a/dev-python/meshpy/metadata.xml
1142 +++ b/dev-python/meshpy/metadata.xml
1143 @@ -1,4 +1,4 @@
1144 -<?xml version="1.0" encoding="UTF-8"?>
1145 +<?xml version='1.0' encoding='UTF-8'?>
1146 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1147 <pkgmetadata>
1148 <maintainer type="project">
1149 @@ -12,7 +12,7 @@ also have many other applications ranging from computer graphics to robotics.
1150 In order to generate these 2D and 3D meshes, MeshPy provides Python interfaces
1151 to two well-regarded mesh generators, Triangle by J. Shewchuk and TetGen by
1152 Hang Si. Both are included in the package in slightly modified versions.
1153 -</longdescription>
1154 + </longdescription>
1155 <upstream>
1156 <remote-id type="pypi">MeshPy</remote-id>
1157 </upstream>
1158
1159 diff --git a/dev-python/metakernel/metadata.xml b/dev-python/metakernel/metadata.xml
1160 index 98f5e4874..e0c68c929 100644
1161 --- a/dev-python/metakernel/metadata.xml
1162 +++ b/dev-python/metakernel/metadata.xml
1163 @@ -1,4 +1,4 @@
1164 -<?xml version="1.0" encoding="UTF-8"?>
1165 +<?xml version='1.0' encoding='UTF-8'?>
1166 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1167 <pkgmetadata>
1168 <maintainer type="project">
1169 @@ -11,7 +11,7 @@
1170 parallel and distributed processing, downloads, and much more).
1171 </longdescription>
1172 <upstream>
1173 - <remote-id type="pypi">metakernel</remote-id>
1174 <remote-id type="github">Calysto/metakernel</remote-id>
1175 + <remote-id type="pypi">metakernel</remote-id>
1176 </upstream>
1177 </pkgmetadata>
1178
1179 diff --git a/dev-python/metakernel_bash/metadata.xml b/dev-python/metakernel_bash/metadata.xml
1180 index 105ab469f..286d590e3 100644
1181 --- a/dev-python/metakernel_bash/metadata.xml
1182 +++ b/dev-python/metakernel_bash/metadata.xml
1183 @@ -1,4 +1,4 @@
1184 -<?xml version="1.0" encoding="UTF-8"?>
1185 +<?xml version='1.0' encoding='UTF-8'?>
1186 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1187 <pkgmetadata>
1188 <maintainer type="project">
1189 @@ -9,7 +9,7 @@
1190 A Bash kernel for Jupyter/IPython, based on MetaKernel.
1191 </longdescription>
1192 <upstream>
1193 - <remote-id type="pypi">metakernel_bash</remote-id>
1194 <remote-id type="github">Calysto/metakernel</remote-id>
1195 + <remote-id type="pypi">metakernel_bash</remote-id>
1196 </upstream>
1197 </pkgmetadata>
1198
1199 diff --git a/dev-python/metakernel_python/metadata.xml b/dev-python/metakernel_python/metadata.xml
1200 index 2aed17634..aaf6cb9d7 100644
1201 --- a/dev-python/metakernel_python/metadata.xml
1202 +++ b/dev-python/metakernel_python/metadata.xml
1203 @@ -1,4 +1,4 @@
1204 -<?xml version="1.0" encoding="UTF-8"?>
1205 +<?xml version='1.0' encoding='UTF-8'?>
1206 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1207 <pkgmetadata>
1208 <maintainer type="project">
1209 @@ -9,7 +9,7 @@
1210 A Python kernel for Jupyter/IPython, based on MetaKernel.
1211 </longdescription>
1212 <upstream>
1213 - <remote-id type="pypi">metakernel_python</remote-id>
1214 <remote-id type="github">Calysto/metakernel</remote-id>
1215 + <remote-id type="pypi">metakernel_python</remote-id>
1216 </upstream>
1217 </pkgmetadata>
1218
1219 diff --git a/dev-python/nbconvert/metadata.xml b/dev-python/nbconvert/metadata.xml
1220 index 10cd4105e..d9cbf5baa 100644
1221 --- a/dev-python/nbconvert/metadata.xml
1222 +++ b/dev-python/nbconvert/metadata.xml
1223 @@ -1,4 +1,4 @@
1224 -<?xml version="1.0" encoding="UTF-8"?>
1225 +<?xml version='1.0' encoding='UTF-8'?>
1226 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1227 <pkgmetadata>
1228 <maintainer type="project">
1229 @@ -9,7 +9,4 @@
1230 Jupyter NBConvert converts Jupyter notebooks to various other
1231 formats via Jinja templates.
1232 </longdescription>
1233 - <upstream>
1234 - <remote-id type="pypi">nbconvert</remote-id>
1235 - </upstream>
1236 </pkgmetadata>
1237
1238 diff --git a/dev-python/nbdime/metadata.xml b/dev-python/nbdime/metadata.xml
1239 index b2a229dc3..5a8712352 100644
1240 --- a/dev-python/nbdime/metadata.xml
1241 +++ b/dev-python/nbdime/metadata.xml
1242 @@ -1,4 +1,4 @@
1243 -<?xml version="1.0" encoding="UTF-8"?>
1244 +<?xml version='1.0' encoding='UTF-8'?>
1245 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1246 <pkgmetadata>
1247 <maintainer type="person">
1248 @@ -12,13 +12,9 @@
1249 <longdescription>
1250 nbdime provides tools for diffing and merging of Jupyter Notebooks.
1251 </longdescription>
1252 - <upstream>
1253 - <remote-id type="github">jupyter/nbdime</remote-id>
1254 - <remote-id type="pypi">nbdime</remote-id>
1255 - </upstream>
1256 <use>
1257 <flag name="webtools">
1258 Install web-based diff and merge tools.
1259 </flag>
1260 -</use>
1261 + </use>
1262 </pkgmetadata>
1263
1264 diff --git a/dev-python/nbformat/metadata.xml b/dev-python/nbformat/metadata.xml
1265 index 6bd91dea5..4788ba53f 100644
1266 --- a/dev-python/nbformat/metadata.xml
1267 +++ b/dev-python/nbformat/metadata.xml
1268 @@ -1,4 +1,4 @@
1269 -<?xml version="1.0" encoding="UTF-8"?>
1270 +<?xml version='1.0' encoding='UTF-8'?>
1271 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1272 <pkgmetadata>
1273 <maintainer type="project">
1274 @@ -11,7 +11,4 @@
1275 notebooks. There is also a JSON schema for notebook format
1276 versions &gt;= 3.
1277 </longdescription>
1278 - <upstream>
1279 - <remote-id type="pypi">nbformat</remote-id>
1280 - </upstream>
1281 </pkgmetadata>
1282
1283 diff --git a/dev-python/newrelic/metadata.xml b/dev-python/newrelic/metadata.xml
1284 index 442e04047..4a7c9adc5 100644
1285 --- a/dev-python/newrelic/metadata.xml
1286 +++ b/dev-python/newrelic/metadata.xml
1287 @@ -1,4 +1,4 @@
1288 -<?xml version="1.0" encoding="UTF-8"?>
1289 +<?xml version='1.0' encoding='UTF-8'?>
1290 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1291 <pkgmetadata>
1292 <maintainer type="project">
1293
1294 diff --git a/dev-python/notebook/metadata.xml b/dev-python/notebook/metadata.xml
1295 index 2751ca0be..8161170dc 100644
1296 --- a/dev-python/notebook/metadata.xml
1297 +++ b/dev-python/notebook/metadata.xml
1298 @@ -1,4 +1,4 @@
1299 -<?xml version="1.0" encoding="UTF-8"?>
1300 +<?xml version='1.0' encoding='UTF-8'?>
1301 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1302 <pkgmetadata>
1303 <maintainer type="project">
1304
1305 diff --git a/dev-python/nvidia-ml-py/metadata.xml b/dev-python/nvidia-ml-py/metadata.xml
1306 index 5e6d9d85c..e18e888d9 100644
1307 --- a/dev-python/nvidia-ml-py/metadata.xml
1308 +++ b/dev-python/nvidia-ml-py/metadata.xml
1309 @@ -1,4 +1,4 @@
1310 -<?xml version="1.0" encoding="UTF-8"?>
1311 +<?xml version='1.0' encoding='UTF-8'?>
1312 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1313 <pkgmetadata>
1314 <maintainer type="person">
1315
1316 diff --git a/dev-python/omniorbpy/metadata.xml b/dev-python/omniorbpy/metadata.xml
1317 index f3506b413..d47182280 100644
1318 --- a/dev-python/omniorbpy/metadata.xml
1319 +++ b/dev-python/omniorbpy/metadata.xml
1320 @@ -1,4 +1,4 @@
1321 -<?xml version="1.0" encoding="UTF-8"?>
1322 +<?xml version='1.0' encoding='UTF-8'?>
1323 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1324 <pkgmetadata>
1325 <maintainer type="project">
1326
1327 diff --git a/dev-python/opal-client/metadata.xml b/dev-python/opal-client/metadata.xml
1328 index 28e2fc558..7aac60648 100644
1329 --- a/dev-python/opal-client/metadata.xml
1330 +++ b/dev-python/opal-client/metadata.xml
1331 @@ -1,4 +1,4 @@
1332 -<?xml version="1.0" encoding="UTF-8"?>
1333 +<?xml version='1.0' encoding='UTF-8'?>
1334 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1335 <pkgmetadata>
1336 <maintainer type="project">
1337
1338 diff --git a/dev-python/pamela/metadata.xml b/dev-python/pamela/metadata.xml
1339 index d1dc0c28b..e55257c75 100644
1340 --- a/dev-python/pamela/metadata.xml
1341 +++ b/dev-python/pamela/metadata.xml
1342 @@ -1,4 +1,4 @@
1343 -<?xml version="1.0" encoding="UTF-8"?>
1344 +<?xml version='1.0' encoding='UTF-8'?>
1345 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1346 <pkgmetadata>
1347 <maintainer type="project">
1348 @@ -10,7 +10,7 @@
1349 written in pure Python (using ctypes).
1350 </longdescription>
1351 <upstream>
1352 - <remote-id type="pypi">pamela</remote-id>
1353 <remote-id type="github">minrk/pamela</remote-id>
1354 + <remote-id type="pypi">pamela</remote-id>
1355 </upstream>
1356 </pkgmetadata>
1357
1358 diff --git a/dev-python/photutils/metadata.xml b/dev-python/photutils/metadata.xml
1359 index b5ab4d774..00ee2183b 100644
1360 --- a/dev-python/photutils/metadata.xml
1361 +++ b/dev-python/photutils/metadata.xml
1362 @@ -1,4 +1,4 @@
1363 -<?xml version="1.0" encoding="UTF-8"?>
1364 +<?xml version='1.0' encoding='UTF-8'?>
1365 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1366 <pkgmetadata>
1367 <maintainer type="project">
1368 @@ -11,7 +11,6 @@
1369 centroid and shape parameters, and performing photometry.
1370 </longdescription>
1371 <upstream>
1372 - <remote-id type="pypi">photutils</remote-id>
1373 <remote-id type="github">astropy/photutils</remote-id>
1374 </upstream>
1375 </pkgmetadata>
1376
1377 diff --git a/dev-python/pickleshare/metadata.xml b/dev-python/pickleshare/metadata.xml
1378 index 5d8abb4a3..967d08889 100644
1379 --- a/dev-python/pickleshare/metadata.xml
1380 +++ b/dev-python/pickleshare/metadata.xml
1381 @@ -1,4 +1,4 @@
1382 -<?xml version="1.0" encoding="UTF-8"?>
1383 +<?xml version='1.0' encoding='UTF-8'?>
1384 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1385 <pkgmetadata>
1386 <maintainer type="project">
1387 @@ -15,7 +15,6 @@
1388 governed by PickleShare.
1389 </longdescription>
1390 <upstream>
1391 - <remote-id type="pypi">pickleshare</remote-id>
1392 <remote-id type="github">pickleshare/pickleshare</remote-id>
1393 </upstream>
1394 </pkgmetadata>
1395
1396 diff --git a/dev-python/prettyplotlib/metadata.xml b/dev-python/prettyplotlib/metadata.xml
1397 index 752a7a1ad..615f1b6db 100644
1398 --- a/dev-python/prettyplotlib/metadata.xml
1399 +++ b/dev-python/prettyplotlib/metadata.xml
1400 @@ -1,4 +1,4 @@
1401 -<?xml version="1.0" encoding="UTF-8"?>
1402 +<?xml version='1.0' encoding='UTF-8'?>
1403 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1404 <pkgmetadata>
1405 <maintainer type="person">
1406 @@ -7,7 +7,7 @@
1407 </maintainer>
1408 <longdescription>
1409 Python matplotlib-enhancer library which painlessly creates
1410 - beautiful default matplotlib plots.
1411 + beautiful default matplotlib plots.
1412 </longdescription>
1413 <upstream>
1414 <remote-id type="pypi">prettyplotlib</remote-id>
1415
1416 diff --git a/dev-python/prov/metadata.xml b/dev-python/prov/metadata.xml
1417 index df7ac6500..1b4b150fb 100644
1418 --- a/dev-python/prov/metadata.xml
1419 +++ b/dev-python/prov/metadata.xml
1420 @@ -1,4 +1,4 @@
1421 -<?xml version="1.0" encoding="UTF-8"?>
1422 +<?xml version='1.0' encoding='UTF-8'?>
1423 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1424 <pkgmetadata>
1425 <maintainer type="person">
1426
1427 diff --git a/dev-python/ptyprocess/metadata.xml b/dev-python/ptyprocess/metadata.xml
1428 index 3ff841fbb..ea8694355 100644
1429 --- a/dev-python/ptyprocess/metadata.xml
1430 +++ b/dev-python/ptyprocess/metadata.xml
1431 @@ -1,4 +1,4 @@
1432 -<?xml version="1.0" encoding="UTF-8"?>
1433 +<?xml version='1.0' encoding='UTF-8'?>
1434 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1435 <pkgmetadata>
1436 <maintainer type="project">
1437
1438 diff --git a/dev-python/pydotplus/metadata.xml b/dev-python/pydotplus/metadata.xml
1439 index 3e56e273a..eb80ef0cd 100644
1440 --- a/dev-python/pydotplus/metadata.xml
1441 +++ b/dev-python/pydotplus/metadata.xml
1442 @@ -1,4 +1,4 @@
1443 -<?xml version="1.0" encoding="UTF-8"?>
1444 +<?xml version='1.0' encoding='UTF-8'?>
1445 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1446 <pkgmetadata>
1447 <maintainer type="person">
1448
1449 diff --git a/dev-python/pyfftw/metadata.xml b/dev-python/pyfftw/metadata.xml
1450 index 039274847..174e4dbdc 100644
1451 --- a/dev-python/pyfftw/metadata.xml
1452 +++ b/dev-python/pyfftw/metadata.xml
1453 @@ -1,4 +1,4 @@
1454 -<?xml version="1.0" encoding="UTF-8"?>
1455 +<?xml version='1.0' encoding='UTF-8'?>
1456 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1457 <pkgmetadata>
1458 <maintainer type="person">
1459
1460 diff --git a/dev-python/pyhdf/metadata.xml b/dev-python/pyhdf/metadata.xml
1461 index bc7e4eaea..d38ca85ff 100644
1462 --- a/dev-python/pyhdf/metadata.xml
1463 +++ b/dev-python/pyhdf/metadata.xml
1464 @@ -1,4 +1,4 @@
1465 -<?xml version="1.0" encoding="UTF-8"?>
1466 +<?xml version='1.0' encoding='UTF-8'?>
1467 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1468 <pkgmetadata>
1469 <maintainer type="person">
1470
1471 diff --git a/dev-python/pylibconfig2/metadata.xml b/dev-python/pylibconfig2/metadata.xml
1472 index ddcf65796..e260b7fe1 100644
1473 --- a/dev-python/pylibconfig2/metadata.xml
1474 +++ b/dev-python/pylibconfig2/metadata.xml
1475 @@ -1,4 +1,4 @@
1476 -<?xml version="1.0" encoding="UTF-8"?>
1477 +<?xml version='1.0' encoding='UTF-8'?>
1478 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1479 <pkgmetadata>
1480 <maintainer type="person">
1481 @@ -19,7 +19,7 @@
1482 only, and represented as a string automatically.
1483 </longdescription>
1484 <upstream>
1485 - <remote-id type="pypi">pylibconfig2</remote-id>
1486 <remote-id type="github">heinzK1X/pylibconfig2</remote-id>
1487 + <remote-id type="pypi">pylibconfig2</remote-id>
1488 </upstream>
1489 </pkgmetadata>
1490
1491 diff --git a/dev-python/pynomo/metadata.xml b/dev-python/pynomo/metadata.xml
1492 index 0ece82028..f365ddf66 100644
1493 --- a/dev-python/pynomo/metadata.xml
1494 +++ b/dev-python/pynomo/metadata.xml
1495 @@ -1,4 +1,4 @@
1496 -<?xml version="1.0" encoding="UTF-8"?>
1497 +<?xml version='1.0' encoding='UTF-8'?>
1498 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1499 <pkgmetadata>
1500 <maintainer type="person">
1501 @@ -8,7 +8,7 @@
1502 Pynomo is a program to create (pdf) nomographs
1503 (nomograms) using Python interpreter. A nomograph (nomogram) is a
1504 graphical solution to an equation.
1505 -</longdescription>
1506 + </longdescription>
1507 <upstream>
1508 <remote-id type="sourceforge">pynomo</remote-id>
1509 </upstream>
1510
1511 diff --git a/dev-python/pysolar/metadata.xml b/dev-python/pysolar/metadata.xml
1512 index a7996892d..fe8be1b12 100644
1513 --- a/dev-python/pysolar/metadata.xml
1514 +++ b/dev-python/pysolar/metadata.xml
1515 @@ -1,4 +1,4 @@
1516 -<?xml version="1.0" encoding="UTF-8"?>
1517 +<?xml version='1.0' encoding='UTF-8'?>
1518 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1519 <pkgmetadata>
1520 <maintainer type="project">
1521 @@ -11,9 +11,8 @@
1522 extremely precise ephemeris calculations, and more. Pysolar can
1523 calculate the location of the sun or the shading percentage as a
1524 function of time for a row of 2-axis tracked panels.
1525 -</longdescription>
1526 + </longdescription>
1527 <upstream>
1528 - <remote-id type="pypi">Pysolar</remote-id>
1529 <remote-id type="github">pingswept/pysolar</remote-id>
1530 </upstream>
1531 </pkgmetadata>
1532
1533 diff --git a/dev-python/python-ivi/metadata.xml b/dev-python/python-ivi/metadata.xml
1534 index 9d59c0382..630240a1d 100644
1535 --- a/dev-python/python-ivi/metadata.xml
1536 +++ b/dev-python/python-ivi/metadata.xml
1537 @@ -1,4 +1,4 @@
1538 -<?xml version="1.0" encoding="UTF-8"?>
1539 +<?xml version='1.0' encoding='UTF-8'?>
1540 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1541 <pkgmetadata>
1542 <maintainer type="person">
1543
1544 diff --git a/dev-python/python-vxi11/metadata.xml b/dev-python/python-vxi11/metadata.xml
1545 index 095fd5346..72510adc7 100644
1546 --- a/dev-python/python-vxi11/metadata.xml
1547 +++ b/dev-python/python-vxi11/metadata.xml
1548 @@ -1,4 +1,4 @@
1549 -<?xml version="1.0" encoding="UTF-8"?>
1550 +<?xml version='1.0' encoding='UTF-8'?>
1551 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1552 <pkgmetadata>
1553 <maintainer type="person">
1554
1555 diff --git a/dev-python/pythoncgns/metadata.xml b/dev-python/pythoncgns/metadata.xml
1556 index 116c8c0b3..35f35f0b7 100644
1557 --- a/dev-python/pythoncgns/metadata.xml
1558 +++ b/dev-python/pythoncgns/metadata.xml
1559 @@ -1,4 +1,4 @@
1560 -<?xml version="1.0" encoding="UTF-8"?>
1561 +<?xml version='1.0' encoding='UTF-8'?>
1562 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1563 <pkgmetadata>
1564 <maintainer type="project">
1565
1566 diff --git a/dev-python/pythonqt/metadata.xml b/dev-python/pythonqt/metadata.xml
1567 index e44f1d0fe..364efbdc3 100644
1568 --- a/dev-python/pythonqt/metadata.xml
1569 +++ b/dev-python/pythonqt/metadata.xml
1570 @@ -1,4 +1,4 @@
1571 -<?xml version="1.0" encoding="UTF-8"?>
1572 +<?xml version='1.0' encoding='UTF-8'?>
1573 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1574 <pkgmetadata>
1575 <maintainer type="project">
1576
1577 diff --git a/dev-python/qtconsole/metadata.xml b/dev-python/qtconsole/metadata.xml
1578 index 83b712f7e..93199c605 100644
1579 --- a/dev-python/qtconsole/metadata.xml
1580 +++ b/dev-python/qtconsole/metadata.xml
1581 @@ -1,4 +1,4 @@
1582 -<?xml version="1.0" encoding="UTF-8"?>
1583 +<?xml version='1.0' encoding='UTF-8'?>
1584 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1585 <pkgmetadata>
1586 <maintainer type="project">
1587 @@ -9,7 +9,4 @@
1588 A rich Qt-based console for working with Jupyter kernels,
1589 supporting rich media output, session export, and more.
1590 </longdescription>
1591 - <upstream>
1592 - <remote-id type="pypi">qtconsole</remote-id>
1593 - </upstream>
1594 </pkgmetadata>
1595
1596 diff --git a/dev-python/snakemake/metadata.xml b/dev-python/snakemake/metadata.xml
1597 index 9fb8f07d6..a21e3edfd 100644
1598 --- a/dev-python/snakemake/metadata.xml
1599 +++ b/dev-python/snakemake/metadata.xml
1600 @@ -10,7 +10,6 @@
1601 <name>Python</name>
1602 </maintainer>
1603 <upstream>
1604 - <remote-id type="github">dev-python/snakemake</remote-id>
1605 <remote-id type="bitbucket">johanneskoester/snakemake</remote-id>
1606 <remote-id type="pypi">snakemake</remote-id>
1607 </upstream>
1608
1609 diff --git a/dev-python/specutils/metadata.xml b/dev-python/specutils/metadata.xml
1610 index 15cc63844..6e70cb363 100644
1611 --- a/dev-python/specutils/metadata.xml
1612 +++ b/dev-python/specutils/metadata.xml
1613 @@ -1,4 +1,4 @@
1614 -<?xml version="1.0" encoding="UTF-8"?>
1615 +<?xml version='1.0' encoding='UTF-8'?>
1616 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1617 <pkgmetadata>
1618 <maintainer type="project">
1619 @@ -11,7 +11,6 @@
1620 into a class with special handling of 1D spectra.
1621 </longdescription>
1622 <upstream>
1623 - <remote-id type="pypi">specutils</remote-id>
1624 <remote-id type="github">astropy/specutils</remote-id>
1625 </upstream>
1626 </pkgmetadata>
1627
1628 diff --git a/dev-python/symengine/metadata.xml b/dev-python/symengine/metadata.xml
1629 index 00019a052..ffc78518d 100644
1630 --- a/dev-python/symengine/metadata.xml
1631 +++ b/dev-python/symengine/metadata.xml
1632 @@ -1,4 +1,4 @@
1633 -<?xml version="1.0" encoding="UTF-8"?>
1634 +<?xml version='1.0' encoding='UTF-8'?>
1635 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1636 <pkgmetadata>
1637 <maintainer type="person">
1638
1639 diff --git a/dev-python/testpath/metadata.xml b/dev-python/testpath/metadata.xml
1640 index cba9cbf64..7183f762d 100644
1641 --- a/dev-python/testpath/metadata.xml
1642 +++ b/dev-python/testpath/metadata.xml
1643 @@ -1,4 +1,4 @@
1644 -<?xml version="1.0" encoding="UTF-8"?>
1645 +<?xml version='1.0' encoding='UTF-8'?>
1646 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1647 <pkgmetadata>
1648 <maintainer type="project">
1649 @@ -11,7 +11,4 @@
1650 filesystem, and tools for mocking system commands and recording
1651 calls to those.
1652 </longdescription>
1653 - <upstream>
1654 - <remote-id type="github">jupyter/testpath</remote-id>
1655 - </upstream>
1656 </pkgmetadata>
1657
1658 diff --git a/dev-python/traitlets/metadata.xml b/dev-python/traitlets/metadata.xml
1659 index fa50e6184..a1cab5d48 100644
1660 --- a/dev-python/traitlets/metadata.xml
1661 +++ b/dev-python/traitlets/metadata.xml
1662 @@ -1,4 +1,4 @@
1663 -<?xml version="1.0" encoding="UTF-8"?>
1664 +<?xml version='1.0' encoding='UTF-8'?>
1665 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1666 <pkgmetadata>
1667 <maintainer type="project">
1668 @@ -11,7 +11,6 @@
1669 the config system of IPython and Jupyter.
1670 </longdescription>
1671 <upstream>
1672 - <remote-id type="pypi">traitlets</remote-id>
1673 <remote-id type="github">ipython/traitlets</remote-id>
1674 </upstream>
1675 </pkgmetadata>
1676
1677 diff --git a/dev-python/ufl/metadata.xml b/dev-python/ufl/metadata.xml
1678 index af0327cec..480a531aa 100644
1679 --- a/dev-python/ufl/metadata.xml
1680 +++ b/dev-python/ufl/metadata.xml
1681 @@ -1,4 +1,4 @@
1682 -<?xml version="1.0" encoding="UTF-8"?>
1683 +<?xml version='1.0' encoding='UTF-8'?>
1684 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1685 <pkgmetadata>
1686 <maintainer type="project">
1687 @@ -14,6 +14,5 @@
1688 </longdescription>
1689 <upstream>
1690 <remote-id type="bitbucket">fenics-project/ufl</remote-id>
1691 - <remote-id type="launchpad">ufl</remote-id>
1692 </upstream>
1693 </pkgmetadata>
1694
1695 diff --git a/dev-python/viper/metadata.xml b/dev-python/viper/metadata.xml
1696 index 430a78511..18c1efff5 100644
1697 --- a/dev-python/viper/metadata.xml
1698 +++ b/dev-python/viper/metadata.xml
1699 @@ -1,4 +1,4 @@
1700 -<?xml version="1.0" encoding="UTF-8"?>
1701 +<?xml version='1.0' encoding='UTF-8'?>
1702 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1703 <pkgmetadata>
1704 <maintainer type="project">
1705
1706 diff --git a/dev-python/widgetsnbextension/metadata.xml b/dev-python/widgetsnbextension/metadata.xml
1707 index 9f0544f5e..56daebe56 100644
1708 --- a/dev-python/widgetsnbextension/metadata.xml
1709 +++ b/dev-python/widgetsnbextension/metadata.xml
1710 @@ -1,4 +1,4 @@
1711 -<?xml version="1.0" encoding="UTF-8"?>
1712 +<?xml version='1.0' encoding='UTF-8'?>
1713 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1714 <pkgmetadata>
1715 <maintainer type="project">
1716 @@ -10,6 +10,5 @@
1717 </longdescription>
1718 <upstream>
1719 <remote-id type="pypi">widgetsnbextension</remote-id>
1720 - <remote-id type="github">ipython/ipywidgets</remote-id>
1721 </upstream>
1722 </pkgmetadata>
1723
1724 diff --git a/dev-tcltk/img_rotate/metadata.xml b/dev-tcltk/img_rotate/metadata.xml
1725 index f1310b451..2cb3f2bf3 100644
1726 --- a/dev-tcltk/img_rotate/metadata.xml
1727 +++ b/dev-tcltk/img_rotate/metadata.xml
1728 @@ -1,4 +1,4 @@
1729 -<?xml version="1.0" encoding="UTF-8"?>
1730 +<?xml version='1.0' encoding='UTF-8'?>
1731 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1732 <pkgmetadata>
1733 <maintainer type="project">
1734
1735 diff --git a/dev-tcltk/togl/metadata.xml b/dev-tcltk/togl/metadata.xml
1736 index d19c9b2f3..9499d8d89 100644
1737 --- a/dev-tcltk/togl/metadata.xml
1738 +++ b/dev-tcltk/togl/metadata.xml
1739 @@ -1,4 +1,4 @@
1740 -<?xml version="1.0" encoding="UTF-8"?>
1741 +<?xml version='1.0' encoding='UTF-8'?>
1742 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1743 <pkgmetadata>
1744 <maintainer type="project">
1745
1746 diff --git a/dev-tex/pythontex/metadata.xml b/dev-tex/pythontex/metadata.xml
1747 index 17dc4a877..dc4de7cb4 100644
1748 --- a/dev-tex/pythontex/metadata.xml
1749 +++ b/dev-tex/pythontex/metadata.xml
1750 @@ -1,4 +1,4 @@
1751 -<?xml version="1.0" encoding="UTF-8"?>
1752 +<?xml version='1.0' encoding='UTF-8'?>
1753 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1754 <pkgmetadata>
1755 <maintainer type="project">
1756
1757 diff --git a/media-gfx/brlcad/metadata.xml b/media-gfx/brlcad/metadata.xml
1758 index fd0913372..a5755a70a 100644
1759 --- a/media-gfx/brlcad/metadata.xml
1760 +++ b/media-gfx/brlcad/metadata.xml
1761 @@ -1,4 +1,4 @@
1762 -<?xml version="1.0" encoding="UTF-8"?>
1763 +<?xml version='1.0' encoding='UTF-8'?>
1764 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1765 <pkgmetadata>
1766 <maintainer type="person">
1767
1768 diff --git a/media-gfx/librecad/metadata.xml b/media-gfx/librecad/metadata.xml
1769 index 56059e49f..83d16d787 100644
1770 --- a/media-gfx/librecad/metadata.xml
1771 +++ b/media-gfx/librecad/metadata.xml
1772 @@ -1,4 +1,4 @@
1773 -<?xml version="1.0" encoding="UTF-8"?>
1774 +<?xml version='1.0' encoding='UTF-8'?>
1775 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1776 <pkgmetadata>
1777 <maintainer type="person">
1778
1779 diff --git a/media-libs/glbinding/metadata.xml b/media-libs/glbinding/metadata.xml
1780 index 4d6a1c0ac..5f82e29cb 100644
1781 --- a/media-libs/glbinding/metadata.xml
1782 +++ b/media-libs/glbinding/metadata.xml
1783 @@ -1,4 +1,4 @@
1784 -<?xml version="1.0" encoding="UTF-8"?>
1785 +<?xml version='1.0' encoding='UTF-8'?>
1786 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1787 <pkgmetadata>
1788 <maintainer type="person">
1789
1790 diff --git a/sci-astronomy/libthesky/metadata.xml b/sci-astronomy/libthesky/metadata.xml
1791 index 03ad4b5fd..374f32bf7 100644
1792 --- a/sci-astronomy/libthesky/metadata.xml
1793 +++ b/sci-astronomy/libthesky/metadata.xml
1794 @@ -1,4 +1,4 @@
1795 -<?xml version="1.0" encoding="UTF-8"?>
1796 +<?xml version='1.0' encoding='UTF-8'?>
1797 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1798 <pkgmetadata>
1799 <maintainer type="person">
1800
1801 diff --git a/sci-astronomy/mosstack/metadata.xml b/sci-astronomy/mosstack/metadata.xml
1802 index c8bd774a7..df5606cca 100644
1803 --- a/sci-astronomy/mosstack/metadata.xml
1804 +++ b/sci-astronomy/mosstack/metadata.xml
1805 @@ -1,4 +1,4 @@
1806 -<?xml version="1.0" encoding="UTF-8"?>
1807 +<?xml version='1.0' encoding='UTF-8'?>
1808 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1809 <pkgmetadata>
1810 <maintainer type="person">
1811
1812 diff --git a/sci-biology/AlignGraph/metadata.xml b/sci-biology/AlignGraph/metadata.xml
1813 index f060cdca7..7863f973a 100644
1814 --- a/sci-biology/AlignGraph/metadata.xml
1815 +++ b/sci-biology/AlignGraph/metadata.xml
1816 @@ -1,4 +1,4 @@
1817 -<?xml version="1.0" encoding="UTF-8"?>
1818 +<?xml version='1.0' encoding='UTF-8'?>
1819 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1820 <pkgmetadata>
1821 <maintainer type="person">
1822
1823 diff --git a/sci-biology/Atlas2/metadata.xml b/sci-biology/Atlas2/metadata.xml
1824 index 3ff6ceef1..4338746db 100644
1825 --- a/sci-biology/Atlas2/metadata.xml
1826 +++ b/sci-biology/Atlas2/metadata.xml
1827 @@ -1,4 +1,4 @@
1828 -<?xml version="1.0" encoding="UTF-8"?>
1829 +<?xml version='1.0' encoding='UTF-8'?>
1830 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1831 <pkgmetadata>
1832 <maintainer type="person">
1833 @@ -13,7 +13,7 @@
1834 Atlas2 is a next-generation sequencing suite of variant analysis
1835 tools specializing in the separation of true SNPs and insertions
1836 and deletions (indels) from sequencing and mapping errors in Whole
1837 - Exome Capture Sequencing (WECS) data.
1838 + Exome Capture Sequencing (WECS) data.
1839 </longdescription>
1840 <upstream>
1841 <remote-id type="sourceforge">downloads</remote-id>
1842
1843 diff --git a/sci-biology/BBmap/metadata.xml b/sci-biology/BBmap/metadata.xml
1844 index 40ba306f4..75990319d 100644
1845 --- a/sci-biology/BBmap/metadata.xml
1846 +++ b/sci-biology/BBmap/metadata.xml
1847 @@ -1,4 +1,4 @@
1848 -<?xml version="1.0" encoding="UTF-8"?>
1849 +<?xml version='1.0' encoding='UTF-8'?>
1850 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1851 <pkgmetadata>
1852 <maintainer type="person">
1853
1854 diff --git a/sci-biology/BRANCH/metadata.xml b/sci-biology/BRANCH/metadata.xml
1855 index e6ac3bb3f..ab90aa364 100644
1856 --- a/sci-biology/BRANCH/metadata.xml
1857 +++ b/sci-biology/BRANCH/metadata.xml
1858 @@ -1,4 +1,4 @@
1859 -<?xml version="1.0" encoding="UTF-8"?>
1860 +<?xml version='1.0' encoding='UTF-8'?>
1861 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1862 <pkgmetadata>
1863 <maintainer type="person">
1864
1865 diff --git a/sci-biology/BamView/metadata.xml b/sci-biology/BamView/metadata.xml
1866 index e25129704..ecc16433b 100644
1867 --- a/sci-biology/BamView/metadata.xml
1868 +++ b/sci-biology/BamView/metadata.xml
1869 @@ -1,4 +1,4 @@
1870 -<?xml version="1.0" encoding="UTF-8"?>
1871 +<?xml version='1.0' encoding='UTF-8'?>
1872 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1873 <pkgmetadata>
1874 <maintainer type="person">
1875
1876 diff --git a/sci-biology/BlastToSam/metadata.xml b/sci-biology/BlastToSam/metadata.xml
1877 index 9885a3a72..86bbb3764 100644
1878 --- a/sci-biology/BlastToSam/metadata.xml
1879 +++ b/sci-biology/BlastToSam/metadata.xml
1880 @@ -1,4 +1,4 @@
1881 -<?xml version="1.0" encoding="UTF-8"?>
1882 +<?xml version='1.0' encoding='UTF-8'?>
1883 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1884 <pkgmetadata>
1885 <maintainer type="person">
1886
1887 diff --git a/sci-biology/EBARDenovo/metadata.xml b/sci-biology/EBARDenovo/metadata.xml
1888 index 3aa5ff5d7..d0f646374 100644
1889 --- a/sci-biology/EBARDenovo/metadata.xml
1890 +++ b/sci-biology/EBARDenovo/metadata.xml
1891 @@ -1,4 +1,4 @@
1892 -<?xml version="1.0" encoding="UTF-8"?>
1893 +<?xml version='1.0' encoding='UTF-8'?>
1894 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1895 <pkgmetadata>
1896 <maintainer type="person">
1897 @@ -10,6 +10,6 @@
1898 <name>Gentoo Biology Project</name>
1899 </maintainer>
1900 <upstream>
1901 - <remote-id type="sourceforge">ebardenovo</remote-id>
1902 + <remote-id type="sourceforge">downloads</remote-id>
1903 </upstream>
1904 </pkgmetadata>
1905
1906 diff --git a/sci-biology/FLASH/metadata.xml b/sci-biology/FLASH/metadata.xml
1907 index bb87910ab..d0f646374 100644
1908 --- a/sci-biology/FLASH/metadata.xml
1909 +++ b/sci-biology/FLASH/metadata.xml
1910 @@ -1,4 +1,4 @@
1911 -<?xml version="1.0" encoding="UTF-8"?>
1912 +<?xml version='1.0' encoding='UTF-8'?>
1913 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1914 <pkgmetadata>
1915 <maintainer type="person">
1916 @@ -10,6 +10,6 @@
1917 <name>Gentoo Biology Project</name>
1918 </maintainer>
1919 <upstream>
1920 - <remote-id type="sourceforge">flashpage</remote-id>
1921 + <remote-id type="sourceforge">downloads</remote-id>
1922 </upstream>
1923 </pkgmetadata>
1924
1925 diff --git a/sci-biology/HTSeq/metadata.xml b/sci-biology/HTSeq/metadata.xml
1926 index a51edc8ae..b08ab454b 100644
1927 --- a/sci-biology/HTSeq/metadata.xml
1928 +++ b/sci-biology/HTSeq/metadata.xml
1929 @@ -1,4 +1,4 @@
1930 -<?xml version="1.0" encoding="UTF-8"?>
1931 +<?xml version='1.0' encoding='UTF-8'?>
1932 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1933 <pkgmetadata>
1934 <maintainer type="person">
1935
1936 diff --git a/sci-biology/IMAGE/metadata.xml b/sci-biology/IMAGE/metadata.xml
1937 index 6d3e53e2e..3dcd782d1 100644
1938 --- a/sci-biology/IMAGE/metadata.xml
1939 +++ b/sci-biology/IMAGE/metadata.xml
1940 @@ -1,4 +1,4 @@
1941 -<?xml version="1.0" encoding="UTF-8"?>
1942 +<?xml version='1.0' encoding='UTF-8'?>
1943 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1944 <pkgmetadata>
1945 <maintainer type="person">
1946
1947 diff --git a/sci-biology/InterMine/metadata.xml b/sci-biology/InterMine/metadata.xml
1948 index 5ac633a2e..5c9c50b32 100644
1949 --- a/sci-biology/InterMine/metadata.xml
1950 +++ b/sci-biology/InterMine/metadata.xml
1951 @@ -1,4 +1,4 @@
1952 -<?xml version="1.0" encoding="UTF-8"?>
1953 +<?xml version='1.0' encoding='UTF-8'?>
1954 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1955 <pkgmetadata>
1956 <maintainer type="person">
1957
1958 diff --git a/sci-biology/MeV/metadata.xml b/sci-biology/MeV/metadata.xml
1959 index ef6150af4..6ed96d4bc 100644
1960 --- a/sci-biology/MeV/metadata.xml
1961 +++ b/sci-biology/MeV/metadata.xml
1962 @@ -1,4 +1,4 @@
1963 -<?xml version="1.0" encoding="UTF-8"?>
1964 +<?xml version='1.0' encoding='UTF-8'?>
1965 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1966 <pkgmetadata>
1967 <maintainer type="person">
1968 @@ -9,6 +9,6 @@
1969 <name>Gentoo Biology Project</name>
1970 </maintainer>
1971 <upstream>
1972 - <remote-id type="sourceforge">mev-tm4</remote-id>
1973 + <remote-id type="sourceforge">downloads</remote-id>
1974 </upstream>
1975 </pkgmetadata>
1976
1977 diff --git a/sci-biology/NGSTools/metadata.xml b/sci-biology/NGSTools/metadata.xml
1978 index 7361e7654..fe6859dd7 100644
1979 --- a/sci-biology/NGSTools/metadata.xml
1980 +++ b/sci-biology/NGSTools/metadata.xml
1981 @@ -1,4 +1,4 @@
1982 -<?xml version="1.0" encoding="UTF-8"?>
1983 +<?xml version='1.0' encoding='UTF-8'?>
1984 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1985 <pkgmetadata>
1986 <maintainer type="person">
1987
1988 diff --git a/sci-biology/OBO-Edit/metadata.xml b/sci-biology/OBO-Edit/metadata.xml
1989 index acbbc35a4..115a34c41 100644
1990 --- a/sci-biology/OBO-Edit/metadata.xml
1991 +++ b/sci-biology/OBO-Edit/metadata.xml
1992 @@ -1,4 +1,4 @@
1993 -<?xml version="1.0" encoding="UTF-8"?>
1994 +<?xml version='1.0' encoding='UTF-8'?>
1995 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
1996 <pkgmetadata>
1997 <maintainer type="person">
1998
1999 diff --git a/sci-biology/RSeQC/metadata.xml b/sci-biology/RSeQC/metadata.xml
2000 index 0452b2835..54bdfb597 100644
2001 --- a/sci-biology/RSeQC/metadata.xml
2002 +++ b/sci-biology/RSeQC/metadata.xml
2003 @@ -1,4 +1,4 @@
2004 -<?xml version="1.0" encoding="UTF-8"?>
2005 +<?xml version='1.0' encoding='UTF-8'?>
2006 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2007 <pkgmetadata>
2008 <maintainer type="person">
2009
2010 diff --git a/sci-biology/Ray/metadata.xml b/sci-biology/Ray/metadata.xml
2011 index 982286fb0..fb7092ff7 100644
2012 --- a/sci-biology/Ray/metadata.xml
2013 +++ b/sci-biology/Ray/metadata.xml
2014 @@ -1,4 +1,4 @@
2015 -<?xml version="1.0" encoding="UTF-8"?>
2016 +<?xml version='1.0' encoding='UTF-8'?>
2017 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2018 <pkgmetadata>
2019 <maintainer type="person">
2020
2021 diff --git a/sci-biology/STAR/metadata.xml b/sci-biology/STAR/metadata.xml
2022 index 68af3388c..f053775b5 100644
2023 --- a/sci-biology/STAR/metadata.xml
2024 +++ b/sci-biology/STAR/metadata.xml
2025 @@ -1,4 +1,4 @@
2026 -<?xml version="1.0" encoding="UTF-8"?>
2027 +<?xml version='1.0' encoding='UTF-8'?>
2028 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2029 <pkgmetadata>
2030 <maintainer type="person">
2031
2032 diff --git a/sci-biology/SolexaQA/metadata.xml b/sci-biology/SolexaQA/metadata.xml
2033 index c9f605e75..f7714240a 100644
2034 --- a/sci-biology/SolexaQA/metadata.xml
2035 +++ b/sci-biology/SolexaQA/metadata.xml
2036 @@ -1,4 +1,4 @@
2037 -<?xml version="1.0" encoding="UTF-8"?>
2038 +<?xml version='1.0' encoding='UTF-8'?>
2039 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2040 <pkgmetadata>
2041 <maintainer type="person">
2042 @@ -10,6 +10,6 @@
2043 <name>Gentoo Biology Project</name>
2044 </maintainer>
2045 <upstream>
2046 - <remote-id type="sourceforge">clview</remote-id>
2047 + <remote-id type="sourceforge">solexaqa</remote-id>
2048 </upstream>
2049 </pkgmetadata>
2050
2051 diff --git a/sci-biology/TransDecoder/metadata.xml b/sci-biology/TransDecoder/metadata.xml
2052 index 42a56a27e..1a522bbe1 100644
2053 --- a/sci-biology/TransDecoder/metadata.xml
2054 +++ b/sci-biology/TransDecoder/metadata.xml
2055 @@ -1,4 +1,4 @@
2056 -<?xml version="1.0" encoding="UTF-8"?>
2057 +<?xml version='1.0' encoding='UTF-8'?>
2058 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2059 <pkgmetadata>
2060 <maintainer type="person">
2061 @@ -11,6 +11,5 @@
2062 </maintainer>
2063 <upstream>
2064 <remote-id type="github">TransDecoder/TransDecoder</remote-id>
2065 - <remote-id type="sourceforge">transdecoder</remote-id>
2066 </upstream>
2067 </pkgmetadata>
2068
2069 diff --git a/sci-biology/Trinotate/metadata.xml b/sci-biology/Trinotate/metadata.xml
2070 index f409887af..b183ac8ee 100644
2071 --- a/sci-biology/Trinotate/metadata.xml
2072 +++ b/sci-biology/Trinotate/metadata.xml
2073 @@ -1,4 +1,4 @@
2074 -<?xml version="1.0" encoding="UTF-8"?>
2075 +<?xml version='1.0' encoding='UTF-8'?>
2076 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2077 <pkgmetadata>
2078 <maintainer type="person">
2079
2080 diff --git a/sci-biology/VarScan-bin/metadata.xml b/sci-biology/VarScan-bin/metadata.xml
2081 index e27dba2e9..01850f614 100644
2082 --- a/sci-biology/VarScan-bin/metadata.xml
2083 +++ b/sci-biology/VarScan-bin/metadata.xml
2084 @@ -6,7 +6,6 @@
2085 <name>Gentoo Science Project</name>
2086 </maintainer>
2087 <upstream>
2088 - <remote-id type="sourceforge">varscan</remote-id>
2089 <remote-id type="github">dkoboldt/varscan</remote-id>
2090 </upstream>
2091 </pkgmetadata>
2092
2093 diff --git a/sci-biology/VarScan/metadata.xml b/sci-biology/VarScan/metadata.xml
2094 index e27dba2e9..c9cbb67e6 100644
2095 --- a/sci-biology/VarScan/metadata.xml
2096 +++ b/sci-biology/VarScan/metadata.xml
2097 @@ -6,7 +6,7 @@
2098 <name>Gentoo Science Project</name>
2099 </maintainer>
2100 <upstream>
2101 - <remote-id type="sourceforge">varscan</remote-id>
2102 <remote-id type="github">dkoboldt/varscan</remote-id>
2103 + <remote-id type="sourceforge">varscan</remote-id>
2104 </upstream>
2105 </pkgmetadata>
2106
2107 diff --git a/sci-biology/abacas/metadata.xml b/sci-biology/abacas/metadata.xml
2108 index c458ee97f..d0f646374 100644
2109 --- a/sci-biology/abacas/metadata.xml
2110 +++ b/sci-biology/abacas/metadata.xml
2111 @@ -1,4 +1,4 @@
2112 -<?xml version="1.0" encoding="UTF-8"?>
2113 +<?xml version='1.0' encoding='UTF-8'?>
2114 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2115 <pkgmetadata>
2116 <maintainer type="person">
2117 @@ -10,6 +10,6 @@
2118 <name>Gentoo Biology Project</name>
2119 </maintainer>
2120 <upstream>
2121 - <remote-id type="sourceforge">abacas</remote-id>
2122 + <remote-id type="sourceforge">downloads</remote-id>
2123 </upstream>
2124 </pkgmetadata>
2125
2126 diff --git a/sci-biology/amos/metadata.xml b/sci-biology/amos/metadata.xml
2127 index d8574e5f0..5b2ca1a74 100644
2128 --- a/sci-biology/amos/metadata.xml
2129 +++ b/sci-biology/amos/metadata.xml
2130 @@ -1,4 +1,4 @@
2131 -<?xml version="1.0" encoding="UTF-8"?>
2132 +<?xml version='1.0' encoding='UTF-8'?>
2133 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2134 <pkgmetadata>
2135 <maintainer type="person">
2136
2137 diff --git a/sci-biology/bambus/metadata.xml b/sci-biology/bambus/metadata.xml
2138 index 4736dbff7..1054fc1ed 100644
2139 --- a/sci-biology/bambus/metadata.xml
2140 +++ b/sci-biology/bambus/metadata.xml
2141 @@ -1,4 +1,4 @@
2142 -<?xml version="1.0" encoding="UTF-8"?>
2143 +<?xml version='1.0' encoding='UTF-8'?>
2144 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2145 <pkgmetadata>
2146 <maintainer type="person">
2147 @@ -11,6 +11,6 @@
2148 </maintainer>
2149 <longdescription>Bambus is the first general purpose scaffolder that is publicly available as an open source package. While most other scaffolders are closely tied to a specific assembly program, Bambus accepts the output from most current assemblers and provides the user with great flexibility in choosing the scaffolding parameters. In particular, Bambus is able to accept contig linking data other than specified by mate-pairs. Such sources of information include alignment to a reference genome (Bambus can directly use the output of MUMmer), physical mapping data, or information about gene synteny.</longdescription>
2150 <upstream>
2151 - <remote-id type="sourceforge">amos</remote-id>
2152 + <remote-id type="sourceforge">mira-assembler</remote-id>
2153 </upstream>
2154 </pkgmetadata>
2155
2156 diff --git a/sci-biology/bamtools/metadata.xml b/sci-biology/bamtools/metadata.xml
2157 index fb098c773..7f0271ab3 100644
2158 --- a/sci-biology/bamtools/metadata.xml
2159 +++ b/sci-biology/bamtools/metadata.xml
2160 @@ -1,4 +1,4 @@
2161 -<?xml version="1.0" encoding="UTF-8"?>
2162 +<?xml version='1.0' encoding='UTF-8'?>
2163 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2164 <pkgmetadata>
2165 <maintainer type="person">
2166
2167 diff --git a/sci-biology/bcftools/metadata.xml b/sci-biology/bcftools/metadata.xml
2168 index 74c17a114..d65c87aa3 100644
2169 --- a/sci-biology/bcftools/metadata.xml
2170 +++ b/sci-biology/bcftools/metadata.xml
2171 @@ -1,4 +1,4 @@
2172 -<?xml version="1.0" encoding="UTF-8"?>
2173 +<?xml version='1.0' encoding='UTF-8'?>
2174 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2175 <pkgmetadata>
2176 <maintainer type="person">
2177
2178 diff --git a/sci-biology/biobambam/metadata.xml b/sci-biology/biobambam/metadata.xml
2179 index a3e55a407..38f3b45cf 100644
2180 --- a/sci-biology/biobambam/metadata.xml
2181 +++ b/sci-biology/biobambam/metadata.xml
2182 @@ -1,4 +1,4 @@
2183 -<?xml version="1.0" encoding="UTF-8"?>
2184 +<?xml version='1.0' encoding='UTF-8'?>
2185 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2186 <pkgmetadata>
2187 <maintainer type="project">
2188 @@ -14,7 +14,7 @@ bammaskflags: reads BAM and writes BAM while masking (removing) bits from the fl
2189 bamrecompress: reads BAM and writes BAM with a defined compression setting. This tool is capable of multi-threading.
2190 bamsort: reads BAM and writes BAM resorted by coordinates or query name
2191 bamtofastq: reads BAM and writes FastQ; output can be collated or uncollated by query name
2192 -</longdescription>
2193 + </longdescription>
2194 <upstream>
2195 <remote-id type="github">gt1/biobambam</remote-id>
2196 </upstream>
2197
2198 diff --git a/sci-biology/biobambam2/metadata.xml b/sci-biology/biobambam2/metadata.xml
2199 index a3e55a407..cb036d969 100644
2200 --- a/sci-biology/biobambam2/metadata.xml
2201 +++ b/sci-biology/biobambam2/metadata.xml
2202 @@ -1,4 +1,4 @@
2203 -<?xml version="1.0" encoding="UTF-8"?>
2204 +<?xml version='1.0' encoding='UTF-8'?>
2205 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2206 <pkgmetadata>
2207 <maintainer type="project">
2208 @@ -14,8 +14,8 @@ bammaskflags: reads BAM and writes BAM while masking (removing) bits from the fl
2209 bamrecompress: reads BAM and writes BAM with a defined compression setting. This tool is capable of multi-threading.
2210 bamsort: reads BAM and writes BAM resorted by coordinates or query name
2211 bamtofastq: reads BAM and writes FastQ; output can be collated or uncollated by query name
2212 -</longdescription>
2213 + </longdescription>
2214 <upstream>
2215 - <remote-id type="github">gt1/biobambam</remote-id>
2216 + <remote-id type="github">gt1/biobambam2</remote-id>
2217 </upstream>
2218 </pkgmetadata>
2219
2220 diff --git a/sci-biology/bru2nii/metadata.xml b/sci-biology/bru2nii/metadata.xml
2221 index 0cec33715..90ef9367d 100644
2222 --- a/sci-biology/bru2nii/metadata.xml
2223 +++ b/sci-biology/bru2nii/metadata.xml
2224 @@ -1,4 +1,4 @@
2225 -<?xml version="1.0" encoding="UTF-8"?>
2226 +<?xml version='1.0' encoding='UTF-8'?>
2227 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2228 <pkgmetadata>
2229 <maintainer type="project">
2230 @@ -8,7 +8,7 @@
2231 <longdescription lang="en">
2232 This is a simple tool for converting Bruker ParaVision MRI data to
2233 the NIfTI file format. It includes both a drag-and-drop graphical
2234 - interface (Bru2Nii) as well as a command line tool (Bru2).
2235 + interface (Bru2Nii) as well as a command line tool (Bru2).
2236 </longdescription>
2237 <upstream>
2238 <remote-id type="github">neurolabusc/Bru2Nii</remote-id>
2239
2240 diff --git a/sci-biology/bx-python/metadata.xml b/sci-biology/bx-python/metadata.xml
2241 index 0a7390bf1..8cdea5d5a 100644
2242 --- a/sci-biology/bx-python/metadata.xml
2243 +++ b/sci-biology/bx-python/metadata.xml
2244 @@ -1,4 +1,4 @@
2245 -<?xml version="1.0" encoding="UTF-8"?>
2246 +<?xml version='1.0' encoding='UTF-8'?>
2247 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2248 <pkgmetadata>
2249 <maintainer type="person">
2250 @@ -10,7 +10,7 @@
2251 <name>Gentoo Biology Project</name>
2252 </maintainer>
2253 <upstream>
2254 - <remote-id type="pypi">bx-python</remote-id>
2255 <remote-id type="bitbucket">james_taylor/bx-python</remote-id>
2256 + <remote-id type="pypi">bx-python</remote-id>
2257 </upstream>
2258 </pkgmetadata>
2259
2260 diff --git a/sci-biology/cd-hit/metadata.xml b/sci-biology/cd-hit/metadata.xml
2261 index 1f3b07521..7f866330d 100644
2262 --- a/sci-biology/cd-hit/metadata.xml
2263 +++ b/sci-biology/cd-hit/metadata.xml
2264 @@ -21,7 +21,6 @@ duplicates from pyrosequencing reads. The usage of other programs and
2265 scripts can be found in CD-HIT user's guide.
2266 </longdescription>
2267 <upstream>
2268 - <remote-id type="google-code">cdhit</remote-id>
2269 <remote-id type="github">weizhongli/cdhit</remote-id>
2270 </upstream>
2271 </pkgmetadata>
2272
2273 diff --git a/sci-biology/clview/metadata.xml b/sci-biology/clview/metadata.xml
2274 index 7adf609cd..31020917d 100644
2275 --- a/sci-biology/clview/metadata.xml
2276 +++ b/sci-biology/clview/metadata.xml
2277 @@ -1,4 +1,4 @@
2278 -<?xml version="1.0" encoding="UTF-8"?>
2279 +<?xml version='1.0' encoding='UTF-8'?>
2280 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2281 <pkgmetadata>
2282 <maintainer type="person">
2283
2284 diff --git a/sci-biology/codonw/metadata.xml b/sci-biology/codonw/metadata.xml
2285 index f66d7b796..fcb129873 100644
2286 --- a/sci-biology/codonw/metadata.xml
2287 +++ b/sci-biology/codonw/metadata.xml
2288 @@ -1,4 +1,4 @@
2289 -<?xml version="1.0" encoding="UTF-8"?>
2290 +<?xml version='1.0' encoding='UTF-8'?>
2291 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2292 <pkgmetadata>
2293 <maintainer type="project">
2294
2295 diff --git a/sci-biology/conifer/metadata.xml b/sci-biology/conifer/metadata.xml
2296 index fe4173913..d0f646374 100644
2297 --- a/sci-biology/conifer/metadata.xml
2298 +++ b/sci-biology/conifer/metadata.xml
2299 @@ -1,4 +1,4 @@
2300 -<?xml version="1.0" encoding="UTF-8"?>
2301 +<?xml version='1.0' encoding='UTF-8'?>
2302 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2303 <pkgmetadata>
2304 <maintainer type="person">
2305
2306 diff --git a/sci-biology/cortex_var/metadata.xml b/sci-biology/cortex_var/metadata.xml
2307 index aeef1bbec..fe8a20d2e 100644
2308 --- a/sci-biology/cortex_var/metadata.xml
2309 +++ b/sci-biology/cortex_var/metadata.xml
2310 @@ -1,4 +1,4 @@
2311 -<?xml version="1.0" encoding="UTF-8"?>
2312 +<?xml version='1.0' encoding='UTF-8'?>
2313 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2314 <pkgmetadata>
2315 <maintainer type="person">
2316
2317 diff --git a/sci-biology/cutadapt/metadata.xml b/sci-biology/cutadapt/metadata.xml
2318 index d432ff9a4..b6f11bf51 100644
2319 --- a/sci-biology/cutadapt/metadata.xml
2320 +++ b/sci-biology/cutadapt/metadata.xml
2321 @@ -10,7 +10,7 @@
2322 <name>Gentoo Biology Project</name>
2323 </maintainer>
2324 <upstream>
2325 - <remote-id type="pypi">cutadapt</remote-id>
2326 <remote-id type="github">marcelm/cutadapt</remote-id>
2327 + <remote-id type="pypi">cutadapt</remote-id>
2328 </upstream>
2329 </pkgmetadata>
2330
2331 diff --git a/sci-biology/dipy/metadata.xml b/sci-biology/dipy/metadata.xml
2332 index 1df8ab815..23f050681 100644
2333 --- a/sci-biology/dipy/metadata.xml
2334 +++ b/sci-biology/dipy/metadata.xml
2335 @@ -1,4 +1,4 @@
2336 -<?xml version="1.0" encoding="UTF-8"?>
2337 +<?xml version='1.0' encoding='UTF-8'?>
2338 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2339 <pkgmetadata>
2340 <maintainer type="person">
2341
2342 diff --git a/sci-biology/discrover/metadata.xml b/sci-biology/discrover/metadata.xml
2343 index bab24b6a0..1055813e9 100644
2344 --- a/sci-biology/discrover/metadata.xml
2345 +++ b/sci-biology/discrover/metadata.xml
2346 @@ -1,4 +1,4 @@
2347 -<?xml version="1.0" encoding="UTF-8"?>
2348 +<?xml version='1.0' encoding='UTF-8'?>
2349 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2350 <pkgmetadata>
2351 <maintainer type="person">
2352
2353 diff --git a/sci-biology/epga/metadata.xml b/sci-biology/epga/metadata.xml
2354 index 991e17bf8..615525179 100644
2355 --- a/sci-biology/epga/metadata.xml
2356 +++ b/sci-biology/epga/metadata.xml
2357 @@ -1,4 +1,4 @@
2358 -<?xml version="1.0" encoding="UTF-8"?>
2359 +<?xml version='1.0' encoding='UTF-8'?>
2360 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2361 <pkgmetadata>
2362 <maintainer type="person">
2363
2364 diff --git a/sci-biology/estscan/metadata.xml b/sci-biology/estscan/metadata.xml
2365 index d709341c0..138f8c095 100644
2366 --- a/sci-biology/estscan/metadata.xml
2367 +++ b/sci-biology/estscan/metadata.xml
2368 @@ -1,4 +1,4 @@
2369 -<?xml version="1.0" encoding="UTF-8"?>
2370 +<?xml version='1.0' encoding='UTF-8'?>
2371 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2372 <pkgmetadata>
2373 <maintainer type="person">
2374 @@ -14,6 +14,6 @@
2375 <flag name="ifc">Undocumented USE</flag>
2376 </use>
2377 <upstream>
2378 - <remote-id type="sourceforge">estscan</remote-id>
2379 + <remote-id type="sourceforge">downloads</remote-id>
2380 </upstream>
2381 </pkgmetadata>
2382
2383 diff --git a/sci-biology/exonerate-gff3/metadata.xml b/sci-biology/exonerate-gff3/metadata.xml
2384 index 10ca6b365..378558dab 100644
2385 --- a/sci-biology/exonerate-gff3/metadata.xml
2386 +++ b/sci-biology/exonerate-gff3/metadata.xml
2387 @@ -1,4 +1,4 @@
2388 -<?xml version="1.0" encoding="UTF-8"?>
2389 +<?xml version='1.0' encoding='UTF-8'?>
2390 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2391 <pkgmetadata>
2392 <maintainer type="person">
2393
2394 diff --git a/sci-biology/fastx_toolkit/metadata.xml b/sci-biology/fastx_toolkit/metadata.xml
2395 index 8203c3958..4db9d1693 100644
2396 --- a/sci-biology/fastx_toolkit/metadata.xml
2397 +++ b/sci-biology/fastx_toolkit/metadata.xml
2398 @@ -1,4 +1,4 @@
2399 -<?xml version="1.0" encoding="UTF-8"?>
2400 +<?xml version='1.0' encoding='UTF-8'?>
2401 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2402 <pkgmetadata>
2403 <maintainer type="project">
2404
2405 diff --git a/sci-biology/ffindex/metadata.xml b/sci-biology/ffindex/metadata.xml
2406 index ccb4049fc..18e09466d 100644
2407 --- a/sci-biology/ffindex/metadata.xml
2408 +++ b/sci-biology/ffindex/metadata.xml
2409 @@ -1,4 +1,4 @@
2410 -<?xml version="1.0" encoding="UTF-8"?>
2411 +<?xml version='1.0' encoding='UTF-8'?>
2412 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2413 <pkgmetadata>
2414 <maintainer type="person">
2415 @@ -9,7 +9,4 @@
2416 <email>sci-biology@g.o</email>
2417 <name>Gentoo Biology Project</name>
2418 </maintainer>
2419 - <upstream>
2420 - <remote-id type="github">TransDecoder/TransDecoder</remote-id>
2421 - </upstream>
2422 </pkgmetadata>
2423
2424 diff --git a/sci-biology/flexbar/metadata.xml b/sci-biology/flexbar/metadata.xml
2425 index 6bf81a0d4..adfdd237a 100644
2426 --- a/sci-biology/flexbar/metadata.xml
2427 +++ b/sci-biology/flexbar/metadata.xml
2428 @@ -10,7 +10,6 @@
2429 <name>Gentoo Biology Project</name>
2430 </maintainer>
2431 <upstream>
2432 - <remote-id type="sourceforge">flexbar</remote-id>
2433 <remote-id type="github">seqan/flexbar</remote-id>
2434 </upstream>
2435 </pkgmetadata>
2436
2437 diff --git a/sci-biology/freebayes/metadata.xml b/sci-biology/freebayes/metadata.xml
2438 index a82cda59f..fdd189bd5 100644
2439 --- a/sci-biology/freebayes/metadata.xml
2440 +++ b/sci-biology/freebayes/metadata.xml
2441 @@ -1,4 +1,4 @@
2442 -<?xml version="1.0" encoding="UTF-8"?>
2443 +<?xml version='1.0' encoding='UTF-8'?>
2444 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2445 <pkgmetadata>
2446 <maintainer type="person">
2447
2448 diff --git a/sci-biology/fsa/metadata.xml b/sci-biology/fsa/metadata.xml
2449 index ec2601d87..d0f646374 100644
2450 --- a/sci-biology/fsa/metadata.xml
2451 +++ b/sci-biology/fsa/metadata.xml
2452 @@ -1,4 +1,4 @@
2453 -<?xml version="1.0" encoding="UTF-8"?>
2454 +<?xml version='1.0' encoding='UTF-8'?>
2455 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2456 <pkgmetadata>
2457 <maintainer type="person">
2458 @@ -10,6 +10,6 @@
2459 <name>Gentoo Biology Project</name>
2460 </maintainer>
2461 <upstream>
2462 - <remote-id type="sourceforge">fsa</remote-id>
2463 + <remote-id type="sourceforge">downloads</remote-id>
2464 </upstream>
2465 </pkgmetadata>
2466
2467 diff --git a/sci-biology/full_lengther_next/metadata.xml b/sci-biology/full_lengther_next/metadata.xml
2468 index 5c826014b..18e09466d 100644
2469 --- a/sci-biology/full_lengther_next/metadata.xml
2470 +++ b/sci-biology/full_lengther_next/metadata.xml
2471 @@ -1,4 +1,4 @@
2472 -<?xml version="1.0" encoding="UTF-8"?>
2473 +<?xml version='1.0' encoding='UTF-8'?>
2474 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2475 <pkgmetadata>
2476 <maintainer type="person">
2477 @@ -9,7 +9,4 @@
2478 <email>sci-biology@g.o</email>
2479 <name>Gentoo Biology Project</name>
2480 </maintainer>
2481 - <upstream>
2482 - <remote-id type="github">trinityrnaseq/trinityrnaseq</remote-id>
2483 - </upstream>
2484 </pkgmetadata>
2485
2486 diff --git a/sci-biology/gap2caf/metadata.xml b/sci-biology/gap2caf/metadata.xml
2487 index fe4173913..d0f646374 100644
2488 --- a/sci-biology/gap2caf/metadata.xml
2489 +++ b/sci-biology/gap2caf/metadata.xml
2490 @@ -1,4 +1,4 @@
2491 -<?xml version="1.0" encoding="UTF-8"?>
2492 +<?xml version='1.0' encoding='UTF-8'?>
2493 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2494 <pkgmetadata>
2495 <maintainer type="person">
2496
2497 diff --git a/sci-biology/gatk/metadata.xml b/sci-biology/gatk/metadata.xml
2498 index 8c1bb6577..baaa7e21c 100644
2499 --- a/sci-biology/gatk/metadata.xml
2500 +++ b/sci-biology/gatk/metadata.xml
2501 @@ -1,4 +1,4 @@
2502 -<?xml version="1.0" encoding="UTF-8"?>
2503 +<?xml version='1.0' encoding='UTF-8'?>
2504 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2505 <pkgmetadata>
2506 <maintainer type="project">
2507
2508 diff --git a/sci-biology/genomeview-bin/metadata.xml b/sci-biology/genomeview-bin/metadata.xml
2509 index b6476ca7b..6646b4398 100644
2510 --- a/sci-biology/genomeview-bin/metadata.xml
2511 +++ b/sci-biology/genomeview-bin/metadata.xml
2512 @@ -1,4 +1,4 @@
2513 -<?xml version="1.0" encoding="UTF-8"?>
2514 +<?xml version='1.0' encoding='UTF-8'?>
2515 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2516 <pkgmetadata>
2517 <maintainer type="person">
2518 @@ -10,6 +10,6 @@
2519 <name>Gentoo Biology Project</name>
2520 </maintainer>
2521 <upstream>
2522 - <remote-id type="sourceforge">genomeview</remote-id>
2523 + <remote-id type="sourceforge">downloads</remote-id>
2524 </upstream>
2525 </pkgmetadata>
2526
2527 diff --git a/sci-biology/gffutils/metadata.xml b/sci-biology/gffutils/metadata.xml
2528 index 70c98005f..154685621 100644
2529 --- a/sci-biology/gffutils/metadata.xml
2530 +++ b/sci-biology/gffutils/metadata.xml
2531 @@ -1,4 +1,4 @@
2532 -<?xml version="1.0" encoding="UTF-8"?>
2533 +<?xml version='1.0' encoding='UTF-8'?>
2534 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2535 <pkgmetadata>
2536 <maintainer type="person">
2537
2538 diff --git a/sci-biology/glean/metadata.xml b/sci-biology/glean/metadata.xml
2539 index be2ebce92..d0f646374 100644
2540 --- a/sci-biology/glean/metadata.xml
2541 +++ b/sci-biology/glean/metadata.xml
2542 @@ -1,4 +1,4 @@
2543 -<?xml version="1.0" encoding="UTF-8"?>
2544 +<?xml version='1.0' encoding='UTF-8'?>
2545 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2546 <pkgmetadata>
2547 <maintainer type="person">
2548 @@ -10,6 +10,6 @@
2549 <name>Gentoo Biology Project</name>
2550 </maintainer>
2551 <upstream>
2552 - <remote-id type="sourceforge">glean-gene</remote-id>
2553 + <remote-id type="sourceforge">downloads</remote-id>
2554 </upstream>
2555 </pkgmetadata>
2556
2557 diff --git a/sci-biology/igv/metadata.xml b/sci-biology/igv/metadata.xml
2558 index 661a0adce..94761dc0e 100644
2559 --- a/sci-biology/igv/metadata.xml
2560 +++ b/sci-biology/igv/metadata.xml
2561 @@ -1,4 +1,4 @@
2562 -<?xml version="1.0" encoding="UTF-8"?>
2563 +<?xml version='1.0' encoding='UTF-8'?>
2564 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2565 <pkgmetadata>
2566 <maintainer type="project">
2567
2568 diff --git a/sci-biology/jtreeview/metadata.xml b/sci-biology/jtreeview/metadata.xml
2569 index a7083bff9..8dddf1715 100644
2570 --- a/sci-biology/jtreeview/metadata.xml
2571 +++ b/sci-biology/jtreeview/metadata.xml
2572 @@ -10,7 +10,7 @@
2573 <name>Gentoo Biology Project</name>
2574 </maintainer>
2575 <upstream>
2576 - <remote-id type="sourceforge">jtreeview</remote-id>
2577 <remote-id type="bitbucket">TreeView3Dev/treeview3</remote-id>
2578 + <remote-id type="sourceforge">jtreeview</remote-id>
2579 </upstream>
2580 </pkgmetadata>
2581
2582 diff --git a/sci-biology/khmer/metadata.xml b/sci-biology/khmer/metadata.xml
2583 index 54fa7d5e4..7587454ae 100644
2584 --- a/sci-biology/khmer/metadata.xml
2585 +++ b/sci-biology/khmer/metadata.xml
2586 @@ -1,4 +1,4 @@
2587 -<?xml version="1.0" encoding="UTF-8"?>
2588 +<?xml version='1.0' encoding='UTF-8'?>
2589 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2590 <pkgmetadata>
2591 <maintainer type="person">
2592 @@ -10,7 +10,7 @@
2593 <name>Gentoo Biology Project</name>
2594 </maintainer>
2595 <upstream>
2596 - <remote-id type="pypi">khmer</remote-id>
2597 <remote-id type="github">ged-lab/khmer</remote-id>
2598 + <remote-id type="pypi">khmer</remote-id>
2599 </upstream>
2600 </pkgmetadata>
2601
2602 diff --git a/sci-biology/lighter/metadata.xml b/sci-biology/lighter/metadata.xml
2603 index 6299d4cb3..ac43ed281 100644
2604 --- a/sci-biology/lighter/metadata.xml
2605 +++ b/sci-biology/lighter/metadata.xml
2606 @@ -1,4 +1,4 @@
2607 -<?xml version="1.0" encoding="UTF-8"?>
2608 +<?xml version='1.0' encoding='UTF-8'?>
2609 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2610 <pkgmetadata>
2611 <maintainer type="person">
2612
2613 diff --git a/sci-biology/lucy/metadata.xml b/sci-biology/lucy/metadata.xml
2614 index 4aca9ee62..b349fc682 100644
2615 --- a/sci-biology/lucy/metadata.xml
2616 +++ b/sci-biology/lucy/metadata.xml
2617 @@ -1,4 +1,4 @@
2618 -<?xml version="1.0" encoding="UTF-8"?>
2619 +<?xml version='1.0' encoding='UTF-8'?>
2620 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2621 <pkgmetadata>
2622 <maintainer type="person">
2623
2624 diff --git a/sci-biology/manatee-igs/metadata.xml b/sci-biology/manatee-igs/metadata.xml
2625 index 8c0eb332c..0318851d4 100644
2626 --- a/sci-biology/manatee-igs/metadata.xml
2627 +++ b/sci-biology/manatee-igs/metadata.xml
2628 @@ -1,4 +1,4 @@
2629 -<?xml version="1.0" encoding="UTF-8"?>
2630 +<?xml version='1.0' encoding='UTF-8'?>
2631 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2632 <pkgmetadata>
2633 <maintainer type="person">
2634
2635 diff --git a/sci-biology/manatee-jcvi/metadata.xml b/sci-biology/manatee-jcvi/metadata.xml
2636 index 8c0eb332c..d0f646374 100644
2637 --- a/sci-biology/manatee-jcvi/metadata.xml
2638 +++ b/sci-biology/manatee-jcvi/metadata.xml
2639 @@ -1,4 +1,4 @@
2640 -<?xml version="1.0" encoding="UTF-8"?>
2641 +<?xml version='1.0' encoding='UTF-8'?>
2642 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2643 <pkgmetadata>
2644 <maintainer type="person">
2645 @@ -10,6 +10,6 @@
2646 <name>Gentoo Biology Project</name>
2647 </maintainer>
2648 <upstream>
2649 - <remote-id type="sourceforge">manatee</remote-id>
2650 + <remote-id type="sourceforge">downloads</remote-id>
2651 </upstream>
2652 </pkgmetadata>
2653
2654 diff --git a/sci-biology/metaseq/metadata.xml b/sci-biology/metaseq/metadata.xml
2655 index 146972acc..2e63b6ca2 100644
2656 --- a/sci-biology/metaseq/metadata.xml
2657 +++ b/sci-biology/metaseq/metadata.xml
2658 @@ -1,4 +1,4 @@
2659 -<?xml version="1.0" encoding="UTF-8"?>
2660 +<?xml version='1.0' encoding='UTF-8'?>
2661 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2662 <pkgmetadata>
2663 <maintainer type="person">
2664
2665 diff --git a/sci-biology/minced/metadata.xml b/sci-biology/minced/metadata.xml
2666 index 58a5e2987..6b04ebb8e 100644
2667 --- a/sci-biology/minced/metadata.xml
2668 +++ b/sci-biology/minced/metadata.xml
2669 @@ -1,4 +1,4 @@
2670 -<?xml version="1.0" encoding="UTF-8"?>
2671 +<?xml version='1.0' encoding='UTF-8'?>
2672 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2673 <pkgmetadata>
2674 <maintainer type="person">
2675 @@ -10,6 +10,6 @@
2676 <name>Gentoo Biology Project</name>
2677 </maintainer>
2678 <upstream>
2679 - <remote-id type="github">ctSkennerton/minced/tree/master</remote-id>
2680 + <remote-id type="github">ctSkennerton/minced</remote-id>
2681 </upstream>
2682 </pkgmetadata>
2683
2684 diff --git a/sci-biology/mira/metadata.xml b/sci-biology/mira/metadata.xml
2685 index 0704cef48..737f0bbc5 100644
2686 --- a/sci-biology/mira/metadata.xml
2687 +++ b/sci-biology/mira/metadata.xml
2688 @@ -1,4 +1,4 @@
2689 -<?xml version="1.0" encoding="UTF-8"?>
2690 +<?xml version='1.0' encoding='UTF-8'?>
2691 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2692 <pkgmetadata>
2693 <maintainer type="project">
2694
2695 diff --git a/sci-biology/mne-python/metadata.xml b/sci-biology/mne-python/metadata.xml
2696 index f1ce8eff1..8b53ad0cd 100644
2697 --- a/sci-biology/mne-python/metadata.xml
2698 +++ b/sci-biology/mne-python/metadata.xml
2699 @@ -1,4 +1,4 @@
2700 -<?xml version="1.0" encoding="UTF-8"?>
2701 +<?xml version='1.0' encoding='UTF-8'?>
2702 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2703 <pkgmetadata>
2704 <maintainer type="project">
2705
2706 diff --git a/sci-biology/mrfast/metadata.xml b/sci-biology/mrfast/metadata.xml
2707 index 3d6ede5a4..cf3225665 100644
2708 --- a/sci-biology/mrfast/metadata.xml
2709 +++ b/sci-biology/mrfast/metadata.xml
2710 @@ -1,4 +1,4 @@
2711 -<?xml version="1.0" encoding="UTF-8"?>
2712 +<?xml version='1.0' encoding='UTF-8'?>
2713 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2714 <pkgmetadata>
2715 <maintainer type="project">
2716
2717 diff --git a/sci-biology/mrsfast/metadata.xml b/sci-biology/mrsfast/metadata.xml
2718 index e27afbabf..07ae0c655 100644
2719 --- a/sci-biology/mrsfast/metadata.xml
2720 +++ b/sci-biology/mrsfast/metadata.xml
2721 @@ -1,4 +1,4 @@
2722 -<?xml version="1.0" encoding="UTF-8"?>
2723 +<?xml version='1.0' encoding='UTF-8'?>
2724 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2725 <pkgmetadata>
2726 <maintainer type="project">
2727
2728 diff --git a/sci-biology/ncbi-genome-download/metadata.xml b/sci-biology/ncbi-genome-download/metadata.xml
2729 index 80cc5d483..da3901ed3 100644
2730 --- a/sci-biology/ncbi-genome-download/metadata.xml
2731 +++ b/sci-biology/ncbi-genome-download/metadata.xml
2732 @@ -1,12 +1,12 @@
2733 -<?xml version="1.0" encoding="UTF-8"?>
2734 +<?xml version='1.0' encoding='UTF-8'?>
2735 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2736 <pkgmetadata>
2737 <maintainer type="person">
2738 <email>freeh4cker@×××××.com</email>
2739 <name>Bertrand Néron</name>
2740 </maintainer>
2741 - <longdescription>Scripts to download genomes from the NCBI FTP servers.</longdescription>
2742 + <longdescription>Scripts to download genomes from the NCBI FTP servers.</longdescription>
2743 <upstream>
2744 - <remote-id type="github">ncbi-genome-download</remote-id>
2745 + <remote-id type="github">kblin/ncbi-genome-download</remote-id>
2746 </upstream>
2747 </pkgmetadata>
2748
2749 diff --git a/sci-biology/ngsview/metadata.xml b/sci-biology/ngsview/metadata.xml
2750 index de315fd15..e8c46ee7f 100644
2751 --- a/sci-biology/ngsview/metadata.xml
2752 +++ b/sci-biology/ngsview/metadata.xml
2753 @@ -1,4 +1,4 @@
2754 -<?xml version="1.0" encoding="UTF-8"?>
2755 +<?xml version='1.0' encoding='UTF-8'?>
2756 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2757 <pkgmetadata>
2758 <maintainer type="person">
2759 @@ -10,6 +10,6 @@
2760 <name>Gentoo Biology Project</name>
2761 </maintainer>
2762 <upstream>
2763 - <remote-id type="sourceforge">ngsview</remote-id>
2764 + <remote-id type="sourceforge">projects</remote-id>
2765 </upstream>
2766 </pkgmetadata>
2767
2768 diff --git a/sci-biology/nilearn/metadata.xml b/sci-biology/nilearn/metadata.xml
2769 index 3954d1f57..2730ad207 100644
2770 --- a/sci-biology/nilearn/metadata.xml
2771 +++ b/sci-biology/nilearn/metadata.xml
2772 @@ -18,7 +18,7 @@
2773 <flag name="plot">Adds optional dependency needed for plotting function subset.</flag>
2774 </use>
2775 <upstream>
2776 - <remote-id type="pypi">nilearn</remote-id>
2777 <remote-id type="github">nilearn/nilearn</remote-id>
2778 + <remote-id type="pypi">nilearn</remote-id>
2779 </upstream>
2780 </pkgmetadata>
2781
2782 diff --git a/sci-biology/nitime/metadata.xml b/sci-biology/nitime/metadata.xml
2783 index 549788bdf..1ed613b50 100644
2784 --- a/sci-biology/nitime/metadata.xml
2785 +++ b/sci-biology/nitime/metadata.xml
2786 @@ -1,4 +1,4 @@
2787 -<?xml version="1.0" encoding="UTF-8"?>
2788 +<?xml version='1.0' encoding='UTF-8'?>
2789 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2790 <pkgmetadata>
2791 <maintainer type="person">
2792
2793 diff --git a/sci-biology/parafly/metadata.xml b/sci-biology/parafly/metadata.xml
2794 index 6f6587b8c..f818cb27f 100644
2795 --- a/sci-biology/parafly/metadata.xml
2796 +++ b/sci-biology/parafly/metadata.xml
2797 @@ -1,4 +1,4 @@
2798 -<?xml version="1.0" encoding="UTF-8"?>
2799 +<?xml version='1.0' encoding='UTF-8'?>
2800 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2801 <pkgmetadata>
2802 <maintainer type="person">
2803
2804 diff --git a/sci-biology/pb-honey/metadata.xml b/sci-biology/pb-honey/metadata.xml
2805 index 7b4669b4b..69f227c89 100644
2806 --- a/sci-biology/pb-honey/metadata.xml
2807 +++ b/sci-biology/pb-honey/metadata.xml
2808 @@ -1,4 +1,4 @@
2809 -<?xml version="1.0" encoding="UTF-8"?>
2810 +<?xml version='1.0' encoding='UTF-8'?>
2811 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2812 <pkgmetadata>
2813 <maintainer type="person">
2814
2815 diff --git a/sci-biology/pb-jelly/metadata.xml b/sci-biology/pb-jelly/metadata.xml
2816 index 7b4669b4b..69f227c89 100644
2817 --- a/sci-biology/pb-jelly/metadata.xml
2818 +++ b/sci-biology/pb-jelly/metadata.xml
2819 @@ -1,4 +1,4 @@
2820 -<?xml version="1.0" encoding="UTF-8"?>
2821 +<?xml version='1.0' encoding='UTF-8'?>
2822 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2823 <pkgmetadata>
2824 <maintainer type="person">
2825
2826 diff --git a/sci-biology/perlprimer/metadata.xml b/sci-biology/perlprimer/metadata.xml
2827 index 9454a7f64..63c8e8be8 100644
2828 --- a/sci-biology/perlprimer/metadata.xml
2829 +++ b/sci-biology/perlprimer/metadata.xml
2830 @@ -1,4 +1,4 @@
2831 -<?xml version="1.0" encoding="UTF-8"?>
2832 +<?xml version='1.0' encoding='UTF-8'?>
2833 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2834 <pkgmetadata>
2835 <maintainer type="project">
2836
2837 diff --git a/sci-biology/picard/metadata.xml b/sci-biology/picard/metadata.xml
2838 index 4ec209225..c316dd522 100644
2839 --- a/sci-biology/picard/metadata.xml
2840 +++ b/sci-biology/picard/metadata.xml
2841 @@ -10,7 +10,7 @@
2842 <name>Gentoo Biology Project</name>
2843 </maintainer>
2844 <upstream>
2845 - <remote-id type="sourceforge">picard</remote-id>
2846 <remote-id type="github">broadinstitute/picard</remote-id>
2847 + <remote-id type="sourceforge">picard</remote-id>
2848 </upstream>
2849 </pkgmetadata>
2850
2851 diff --git a/sci-biology/psychopy/metadata.xml b/sci-biology/psychopy/metadata.xml
2852 index e5d49f5cb..e15c9ad62 100644
2853 --- a/sci-biology/psychopy/metadata.xml
2854 +++ b/sci-biology/psychopy/metadata.xml
2855 @@ -6,7 +6,6 @@
2856 <name>Horea Christian</name>
2857 </maintainer>
2858 <upstream>
2859 - <remote-id type="sourceforge">psychpy</remote-id>
2860 <remote-id type="github">psychopy/psychopy</remote-id>
2861 </upstream>
2862 </pkgmetadata>
2863
2864 diff --git a/sci-biology/pybedtools/metadata.xml b/sci-biology/pybedtools/metadata.xml
2865 index 320a73b8e..1e65e6b61 100644
2866 --- a/sci-biology/pybedtools/metadata.xml
2867 +++ b/sci-biology/pybedtools/metadata.xml
2868 @@ -1,4 +1,4 @@
2869 -<?xml version="1.0" encoding="UTF-8"?>
2870 +<?xml version='1.0' encoding='UTF-8'?>
2871 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2872 <pkgmetadata>
2873 <maintainer type="person">
2874
2875 diff --git a/sci-biology/pyfaidx/metadata.xml b/sci-biology/pyfaidx/metadata.xml
2876 index ea3df526e..d12d54610 100644
2877 --- a/sci-biology/pyfaidx/metadata.xml
2878 +++ b/sci-biology/pyfaidx/metadata.xml
2879 @@ -1,4 +1,4 @@
2880 -<?xml version="1.0" encoding="UTF-8"?>
2881 +<?xml version='1.0' encoding='UTF-8'?>
2882 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2883 <pkgmetadata>
2884 <maintainer type="person">
2885
2886 diff --git a/sci-biology/pysam/metadata.xml b/sci-biology/pysam/metadata.xml
2887 index d286c313f..3ff9cd0b0 100644
2888 --- a/sci-biology/pysam/metadata.xml
2889 +++ b/sci-biology/pysam/metadata.xml
2890 @@ -1,12 +1,8 @@
2891 -<?xml version="1.0" encoding="UTF-8"?>
2892 +<?xml version='1.0' encoding='UTF-8'?>
2893 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2894 <pkgmetadata>
2895 <maintainer type="project">
2896 <email>sci-biology@g.o</email>
2897 <name>Gentoo Biology Project</name>
2898 </maintainer>
2899 - <upstream>
2900 - <remote-id type="google-code">pysam</remote-id>
2901 - <remote-id type="github">pysam-developers/pysam</remote-id>
2902 - </upstream>
2903 </pkgmetadata>
2904
2905 diff --git a/sci-biology/pysurfer/metadata.xml b/sci-biology/pysurfer/metadata.xml
2906 index 20bf7714c..35df4a292 100644
2907 --- a/sci-biology/pysurfer/metadata.xml
2908 +++ b/sci-biology/pysurfer/metadata.xml
2909 @@ -1,4 +1,4 @@
2910 -<?xml version="1.0" encoding="UTF-8"?>
2911 +<?xml version='1.0' encoding='UTF-8'?>
2912 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2913 <pkgmetadata>
2914 <maintainer type="project">
2915
2916 diff --git a/sci-biology/quast/metadata.xml b/sci-biology/quast/metadata.xml
2917 index fc50a9a26..c275f1f78 100644
2918 --- a/sci-biology/quast/metadata.xml
2919 +++ b/sci-biology/quast/metadata.xml
2920 @@ -1,4 +1,4 @@
2921 -<?xml version="1.0" encoding="UTF-8"?>
2922 +<?xml version='1.0' encoding='UTF-8'?>
2923 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2924 <pkgmetadata>
2925 <maintainer type="person">
2926
2927 diff --git a/sci-biology/rum/metadata.xml b/sci-biology/rum/metadata.xml
2928 index 797ed0b85..d2d1746d2 100644
2929 --- a/sci-biology/rum/metadata.xml
2930 +++ b/sci-biology/rum/metadata.xml
2931 @@ -1,4 +1,4 @@
2932 -<?xml version="1.0" encoding="UTF-8"?>
2933 +<?xml version='1.0' encoding='UTF-8'?>
2934 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2935 <pkgmetadata>
2936 <maintainer type="person">
2937 @@ -10,6 +10,6 @@
2938 <name>Gentoo Biology Project</name>
2939 </maintainer>
2940 <upstream>
2941 - <remote-id type="github">itmat/rum/wiki</remote-id>
2942 + <remote-id type="github">itmat/rum</remote-id>
2943 </upstream>
2944 </pkgmetadata>
2945
2946 diff --git a/sci-biology/sabre/metadata.xml b/sci-biology/sabre/metadata.xml
2947 index 6efd5bbbd..4e02c2f05 100644
2948 --- a/sci-biology/sabre/metadata.xml
2949 +++ b/sci-biology/sabre/metadata.xml
2950 @@ -1,4 +1,4 @@
2951 -<?xml version="1.0" encoding="UTF-8"?>
2952 +<?xml version='1.0' encoding='UTF-8'?>
2953 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2954 <pkgmetadata>
2955 <maintainer type="person">
2956
2957 diff --git a/sci-biology/sailfish/metadata.xml b/sci-biology/sailfish/metadata.xml
2958 index 2831ceb14..61d2e7a64 100644
2959 --- a/sci-biology/sailfish/metadata.xml
2960 +++ b/sci-biology/sailfish/metadata.xml
2961 @@ -1,4 +1,4 @@
2962 -<?xml version="1.0" encoding="UTF-8"?>
2963 +<?xml version='1.0' encoding='UTF-8'?>
2964 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2965 <pkgmetadata>
2966 <maintainer type="project">
2967
2968 diff --git a/sci-biology/salmon/metadata.xml b/sci-biology/salmon/metadata.xml
2969 index cb020ecde..62715bec6 100644
2970 --- a/sci-biology/salmon/metadata.xml
2971 +++ b/sci-biology/salmon/metadata.xml
2972 @@ -1,4 +1,4 @@
2973 -<?xml version="1.0" encoding="UTF-8"?>
2974 +<?xml version='1.0' encoding='UTF-8'?>
2975 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2976 <pkgmetadata>
2977 <maintainer type="project">
2978
2979 diff --git a/sci-biology/samstat/metadata.xml b/sci-biology/samstat/metadata.xml
2980 index 74a00f598..516373ad8 100644
2981 --- a/sci-biology/samstat/metadata.xml
2982 +++ b/sci-biology/samstat/metadata.xml
2983 @@ -1,4 +1,4 @@
2984 -<?xml version="1.0" encoding="UTF-8"?>
2985 +<?xml version='1.0' encoding='UTF-8'?>
2986 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2987 <pkgmetadata>
2988 <maintainer type="person">
2989
2990 diff --git a/sci-biology/samtools/metadata.xml b/sci-biology/samtools/metadata.xml
2991 index 5b953af48..49735ee17 100644
2992 --- a/sci-biology/samtools/metadata.xml
2993 +++ b/sci-biology/samtools/metadata.xml
2994 @@ -1,4 +1,4 @@
2995 -<?xml version="1.0" encoding="UTF-8"?>
2996 +<?xml version='1.0' encoding='UTF-8'?>
2997 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
2998 <pkgmetadata>
2999 <maintainer type="project">
3000
3001 diff --git a/sci-biology/scaffold_builder/metadata.xml b/sci-biology/scaffold_builder/metadata.xml
3002 index 0af91617e..d0f646374 100644
3003 --- a/sci-biology/scaffold_builder/metadata.xml
3004 +++ b/sci-biology/scaffold_builder/metadata.xml
3005 @@ -1,4 +1,4 @@
3006 -<?xml version="1.0" encoding="UTF-8"?>
3007 +<?xml version='1.0' encoding='UTF-8'?>
3008 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3009 <pkgmetadata>
3010 <maintainer type="person">
3011 @@ -10,6 +10,6 @@
3012 <name>Gentoo Biology Project</name>
3013 </maintainer>
3014 <upstream>
3015 - <remote-id type="sourceforge">scaffold-b</remote-id>
3016 + <remote-id type="sourceforge">downloads</remote-id>
3017 </upstream>
3018 </pkgmetadata>
3019
3020 diff --git a/sci-biology/scbi_blast/metadata.xml b/sci-biology/scbi_blast/metadata.xml
3021 index dd1623955..9eed61d49 100644
3022 --- a/sci-biology/scbi_blast/metadata.xml
3023 +++ b/sci-biology/scbi_blast/metadata.xml
3024 @@ -10,7 +10,6 @@
3025 <name>Gentoo Biology Project</name>
3026 </maintainer>
3027 <upstream>
3028 - <remote-id type="github">trinityrnaseq/trinityrnaseq</remote-id>
3029 <remote-id type="rubygems">scbi_blast</remote-id>
3030 </upstream>
3031 </pkgmetadata>
3032
3033 diff --git a/sci-biology/scbi_fasta/metadata.xml b/sci-biology/scbi_fasta/metadata.xml
3034 index f8f3e47a2..36ecf15ef 100644
3035 --- a/sci-biology/scbi_fasta/metadata.xml
3036 +++ b/sci-biology/scbi_fasta/metadata.xml
3037 @@ -10,7 +10,6 @@
3038 <name>Gentoo Biology Project</name>
3039 </maintainer>
3040 <upstream>
3041 - <remote-id type="github">trinityrnaseq/trinityrnaseq</remote-id>
3042 <remote-id type="rubygems">scbi_fasta</remote-id>
3043 </upstream>
3044 </pkgmetadata>
3045
3046 diff --git a/sci-biology/scbi_mapreduce/metadata.xml b/sci-biology/scbi_mapreduce/metadata.xml
3047 index a39eed183..c9e61f5f3 100644
3048 --- a/sci-biology/scbi_mapreduce/metadata.xml
3049 +++ b/sci-biology/scbi_mapreduce/metadata.xml
3050 @@ -10,7 +10,6 @@
3051 <name>Gentoo Biology Project</name>
3052 </maintainer>
3053 <upstream>
3054 - <remote-id type="github">trinityrnaseq/trinityrnaseq</remote-id>
3055 <remote-id type="rubygems">scbi_mapreduce</remote-id>
3056 </upstream>
3057 </pkgmetadata>
3058
3059 diff --git a/sci-biology/scbi_plot/metadata.xml b/sci-biology/scbi_plot/metadata.xml
3060 index 5e2713549..4c8659f89 100644
3061 --- a/sci-biology/scbi_plot/metadata.xml
3062 +++ b/sci-biology/scbi_plot/metadata.xml
3063 @@ -10,7 +10,6 @@
3064 <name>Gentoo Biology Project</name>
3065 </maintainer>
3066 <upstream>
3067 - <remote-id type="github">trinityrnaseq/trinityrnaseq</remote-id>
3068 <remote-id type="rubygems">scbi_plot</remote-id>
3069 </upstream>
3070 </pkgmetadata>
3071
3072 diff --git a/sci-biology/screed/metadata.xml b/sci-biology/screed/metadata.xml
3073 index 65a0f9813..21ae0b4b6 100644
3074 --- a/sci-biology/screed/metadata.xml
3075 +++ b/sci-biology/screed/metadata.xml
3076 @@ -1,4 +1,4 @@
3077 -<?xml version="1.0" encoding="UTF-8"?>
3078 +<?xml version='1.0' encoding='UTF-8'?>
3079 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3080 <pkgmetadata>
3081 <maintainer type="project">
3082 @@ -6,7 +6,7 @@
3083 <name>Gentoo Biology Project</name>
3084 </maintainer>
3085 <upstream>
3086 - <remote-id type="pypi">screed</remote-id>
3087 <remote-id type="github">ged-lab/screed</remote-id>
3088 + <remote-id type="pypi">screed</remote-id>
3089 </upstream>
3090 </pkgmetadata>
3091
3092 diff --git a/sci-biology/scythe/metadata.xml b/sci-biology/scythe/metadata.xml
3093 index 09173eedf..4bcbeeb31 100644
3094 --- a/sci-biology/scythe/metadata.xml
3095 +++ b/sci-biology/scythe/metadata.xml
3096 @@ -1,4 +1,4 @@
3097 -<?xml version="1.0" encoding="UTF-8"?>
3098 +<?xml version='1.0' encoding='UTF-8'?>
3099 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3100 <pkgmetadata>
3101 <maintainer type="person">
3102
3103 diff --git a/sci-biology/sga/metadata.xml b/sci-biology/sga/metadata.xml
3104 index 891445344..028b21c5d 100644
3105 --- a/sci-biology/sga/metadata.xml
3106 +++ b/sci-biology/sga/metadata.xml
3107 @@ -1,4 +1,4 @@
3108 -<?xml version="1.0" encoding="UTF-8"?>
3109 +<?xml version='1.0' encoding='UTF-8'?>
3110 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3111 <pkgmetadata>
3112 <maintainer type="person">
3113
3114 diff --git a/sci-biology/sickle/metadata.xml b/sci-biology/sickle/metadata.xml
3115 index 3bf94ce42..5607edcbd 100644
3116 --- a/sci-biology/sickle/metadata.xml
3117 +++ b/sci-biology/sickle/metadata.xml
3118 @@ -1,4 +1,4 @@
3119 -<?xml version="1.0" encoding="UTF-8"?>
3120 +<?xml version='1.0' encoding='UTF-8'?>
3121 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3122 <pkgmetadata>
3123 <maintainer type="person">
3124
3125 diff --git a/sci-biology/skewer-bin/metadata.xml b/sci-biology/skewer-bin/metadata.xml
3126 index ef427fa2c..4c94908e8 100644
3127 --- a/sci-biology/skewer-bin/metadata.xml
3128 +++ b/sci-biology/skewer-bin/metadata.xml
3129 @@ -1,4 +1,4 @@
3130 -<?xml version="1.0" encoding="UTF-8"?>
3131 +<?xml version='1.0' encoding='UTF-8'?>
3132 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3133 <pkgmetadata>
3134 <maintainer type="person">
3135
3136 diff --git a/sci-biology/staden/metadata.xml b/sci-biology/staden/metadata.xml
3137 index 495d3ba4e..73d16b005 100644
3138 --- a/sci-biology/staden/metadata.xml
3139 +++ b/sci-biology/staden/metadata.xml
3140 @@ -1,4 +1,4 @@
3141 -<?xml version="1.0" encoding="UTF-8"?>
3142 +<?xml version='1.0' encoding='UTF-8'?>
3143 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3144 <pkgmetadata>
3145 <maintainer type="person">
3146
3147 diff --git a/sci-biology/subread/metadata.xml b/sci-biology/subread/metadata.xml
3148 index 8e4c81897..dc7a68adc 100644
3149 --- a/sci-biology/subread/metadata.xml
3150 +++ b/sci-biology/subread/metadata.xml
3151 @@ -1,4 +1,4 @@
3152 -<?xml version="1.0" encoding="UTF-8"?>
3153 +<?xml version='1.0' encoding='UTF-8'?>
3154 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3155 <pkgmetadata>
3156 <maintainer type="person">
3157
3158 diff --git a/sci-biology/swissknife/metadata.xml b/sci-biology/swissknife/metadata.xml
3159 index e3353da6f..cc4d8f93e 100644
3160 --- a/sci-biology/swissknife/metadata.xml
3161 +++ b/sci-biology/swissknife/metadata.xml
3162 @@ -1,4 +1,4 @@
3163 -<?xml version="1.0" encoding="UTF-8"?>
3164 +<?xml version='1.0' encoding='UTF-8'?>
3165 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3166 <pkgmetadata>
3167 <maintainer type="project">
3168
3169 diff --git a/sci-biology/trinityrnaseq/metadata.xml b/sci-biology/trinityrnaseq/metadata.xml
3170 index 5c826014b..bc150ff20 100644
3171 --- a/sci-biology/trinityrnaseq/metadata.xml
3172 +++ b/sci-biology/trinityrnaseq/metadata.xml
3173 @@ -1,4 +1,4 @@
3174 -<?xml version="1.0" encoding="UTF-8"?>
3175 +<?xml version='1.0' encoding='UTF-8'?>
3176 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3177 <pkgmetadata>
3178 <maintainer type="person">
3179
3180 diff --git a/sci-biology/trowel/metadata.xml b/sci-biology/trowel/metadata.xml
3181 index 111e2c698..d0f646374 100644
3182 --- a/sci-biology/trowel/metadata.xml
3183 +++ b/sci-biology/trowel/metadata.xml
3184 @@ -1,4 +1,4 @@
3185 -<?xml version="1.0" encoding="UTF-8"?>
3186 +<?xml version='1.0' encoding='UTF-8'?>
3187 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3188 <pkgmetadata>
3189 <maintainer type="person">
3190 @@ -10,6 +10,6 @@
3191 <name>Gentoo Biology Project</name>
3192 </maintainer>
3193 <upstream>
3194 - <remote-id type="sourceforge">trowel-ec</remote-id>
3195 + <remote-id type="sourceforge">downloads</remote-id>
3196 </upstream>
3197 </pkgmetadata>
3198
3199 diff --git a/sci-biology/vcftools/metadata.xml b/sci-biology/vcftools/metadata.xml
3200 index 6c22d1920..87e26a1d6 100644
3201 --- a/sci-biology/vcftools/metadata.xml
3202 +++ b/sci-biology/vcftools/metadata.xml
3203 @@ -6,7 +6,7 @@
3204 <name>Gentoo Biology Project</name>
3205 </maintainer>
3206 <upstream>
3207 - <remote-id type="sourceforge">vcftools</remote-id>
3208 <remote-id type="github">vcftools/vcftools</remote-id>
3209 + <remote-id type="sourceforge">vcftools</remote-id>
3210 </upstream>
3211 </pkgmetadata>
3212
3213 diff --git a/sci-biology/wgs-assembler/metadata.xml b/sci-biology/wgs-assembler/metadata.xml
3214 index fa8a259ff..5564097a7 100644
3215 --- a/sci-biology/wgs-assembler/metadata.xml
3216 +++ b/sci-biology/wgs-assembler/metadata.xml
3217 @@ -1,4 +1,4 @@
3218 -<?xml version="1.0" encoding="UTF-8"?>
3219 +<?xml version='1.0' encoding='UTF-8'?>
3220 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3221 <pkgmetadata>
3222 <maintainer type="project">
3223
3224 diff --git a/sci-chemistry/GromacsWrapper/metadata.xml b/sci-chemistry/GromacsWrapper/metadata.xml
3225 index 16752065b..f5a6c6b65 100644
3226 --- a/sci-chemistry/GromacsWrapper/metadata.xml
3227 +++ b/sci-chemistry/GromacsWrapper/metadata.xml
3228 @@ -1,4 +1,4 @@
3229 -<?xml version="1.0" encoding="UTF-8"?>
3230 +<?xml version='1.0' encoding='UTF-8'?>
3231 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3232 <pkgmetadata>
3233 <maintainer type="person">
3234 @@ -9,7 +9,4 @@
3235 <email>sci-chemistry@g.o</email>
3236 <name>Gentoo Chemistry Project</name>
3237 </maintainer>
3238 - <upstream>
3239 - <remote-id type="github">orbeckst/GromacsWrapper</remote-id>
3240 - </upstream>
3241 </pkgmetadata>
3242
3243 diff --git a/sci-chemistry/NMRdyn/metadata.xml b/sci-chemistry/NMRdyn/metadata.xml
3244 index 5670afe1a..b7684473f 100644
3245 --- a/sci-chemistry/NMRdyn/metadata.xml
3246 +++ b/sci-chemistry/NMRdyn/metadata.xml
3247 @@ -1,4 +1,4 @@
3248 -<?xml version="1.0" encoding="UTF-8"?>
3249 +<?xml version='1.0' encoding='UTF-8'?>
3250 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3251 <pkgmetadata>
3252 <maintainer type="person">
3253
3254 diff --git a/sci-chemistry/burrow-owl/metadata.xml b/sci-chemistry/burrow-owl/metadata.xml
3255 index 776713a5d..b6097c0e2 100644
3256 --- a/sci-chemistry/burrow-owl/metadata.xml
3257 +++ b/sci-chemistry/burrow-owl/metadata.xml
3258 @@ -1,4 +1,4 @@
3259 -<?xml version="1.0" encoding="UTF-8"?>
3260 +<?xml version='1.0' encoding='UTF-8'?>
3261 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3262 <pkgmetadata>
3263 <maintainer type="project">
3264
3265 diff --git a/sci-chemistry/cnsface/metadata.xml b/sci-chemistry/cnsface/metadata.xml
3266 index 2804b70c4..8b64e0473 100644
3267 --- a/sci-chemistry/cnsface/metadata.xml
3268 +++ b/sci-chemistry/cnsface/metadata.xml
3269 @@ -1,4 +1,4 @@
3270 -<?xml version="1.0" encoding="UTF-8"?>
3271 +<?xml version='1.0' encoding='UTF-8'?>
3272 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3273 <pkgmetadata>
3274 <maintainer type="project">
3275
3276 diff --git a/sci-chemistry/mdsctk/metadata.xml b/sci-chemistry/mdsctk/metadata.xml
3277 index 824d5f0e9..88176dc96 100644
3278 --- a/sci-chemistry/mdsctk/metadata.xml
3279 +++ b/sci-chemistry/mdsctk/metadata.xml
3280 @@ -1,4 +1,4 @@
3281 -<?xml version="1.0" encoding="UTF-8"?>
3282 +<?xml version='1.0' encoding='UTF-8'?>
3283 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3284 <pkgmetadata>
3285 <maintainer type="person">
3286
3287 diff --git a/sci-chemistry/openbabel-java/metadata.xml b/sci-chemistry/openbabel-java/metadata.xml
3288 index 89e965e2f..7b3bd73b6 100644
3289 --- a/sci-chemistry/openbabel-java/metadata.xml
3290 +++ b/sci-chemistry/openbabel-java/metadata.xml
3291 @@ -1,4 +1,4 @@
3292 -<?xml version="1.0" encoding="UTF-8"?>
3293 +<?xml version='1.0' encoding='UTF-8'?>
3294 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3295 <pkgmetadata>
3296 <maintainer type="project">
3297
3298 diff --git a/sci-chemistry/openbabel-perl/metadata.xml b/sci-chemistry/openbabel-perl/metadata.xml
3299 index 08a5886c7..2c0c6f576 100644
3300 --- a/sci-chemistry/openbabel-perl/metadata.xml
3301 +++ b/sci-chemistry/openbabel-perl/metadata.xml
3302 @@ -1,4 +1,4 @@
3303 -<?xml version="1.0" encoding="UTF-8"?>
3304 +<?xml version='1.0' encoding='UTF-8'?>
3305 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3306 <pkgmetadata>
3307 <maintainer type="project">
3308
3309 diff --git a/sci-chemistry/openbabel-python/metadata.xml b/sci-chemistry/openbabel-python/metadata.xml
3310 index b332bc446..55af72716 100644
3311 --- a/sci-chemistry/openbabel-python/metadata.xml
3312 +++ b/sci-chemistry/openbabel-python/metadata.xml
3313 @@ -1,4 +1,4 @@
3314 -<?xml version="1.0" encoding="UTF-8"?>
3315 +<?xml version='1.0' encoding='UTF-8'?>
3316 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3317 <pkgmetadata>
3318 <maintainer type="project">
3319
3320 diff --git a/sci-chemistry/openbabel-ruby/metadata.xml b/sci-chemistry/openbabel-ruby/metadata.xml
3321 index 2988de9aa..5912568a0 100644
3322 --- a/sci-chemistry/openbabel-ruby/metadata.xml
3323 +++ b/sci-chemistry/openbabel-ruby/metadata.xml
3324 @@ -1,4 +1,4 @@
3325 -<?xml version="1.0" encoding="UTF-8"?>
3326 +<?xml version='1.0' encoding='UTF-8'?>
3327 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3328 <pkgmetadata>
3329 <maintainer type="project">
3330
3331 diff --git a/sci-chemistry/openbabel/metadata.xml b/sci-chemistry/openbabel/metadata.xml
3332 index 1508b8cc5..a76a86e66 100644
3333 --- a/sci-chemistry/openbabel/metadata.xml
3334 +++ b/sci-chemistry/openbabel/metadata.xml
3335 @@ -1,4 +1,4 @@
3336 -<?xml version="1.0" encoding="UTF-8"?>
3337 +<?xml version='1.0' encoding='UTF-8'?>
3338 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3339 <pkgmetadata>
3340 <maintainer type="project">
3341
3342 diff --git a/sci-chemistry/pesto/metadata.xml b/sci-chemistry/pesto/metadata.xml
3343 index 75fae4ed2..7db888e43 100644
3344 --- a/sci-chemistry/pesto/metadata.xml
3345 +++ b/sci-chemistry/pesto/metadata.xml
3346 @@ -1,4 +1,4 @@
3347 -<?xml version="1.0" encoding="UTF-8"?>
3348 +<?xml version='1.0' encoding='UTF-8'?>
3349 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3350 <pkgmetadata>
3351 <maintainer type="project">
3352
3353 diff --git a/sci-chemistry/pymol-plugins-psico/metadata.xml b/sci-chemistry/pymol-plugins-psico/metadata.xml
3354 index 1853602e7..6f3c380f3 100644
3355 --- a/sci-chemistry/pymol-plugins-psico/metadata.xml
3356 +++ b/sci-chemistry/pymol-plugins-psico/metadata.xml
3357 @@ -1,4 +1,4 @@
3358 -<?xml version="1.0" encoding="UTF-8"?>
3359 +<?xml version='1.0' encoding='UTF-8'?>
3360 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3361 <pkgmetadata>
3362 <maintainer type="person">
3363
3364 diff --git a/sci-chemistry/pyquante/metadata.xml b/sci-chemistry/pyquante/metadata.xml
3365 index 001c3b384..191423d34 100644
3366 --- a/sci-chemistry/pyquante/metadata.xml
3367 +++ b/sci-chemistry/pyquante/metadata.xml
3368 @@ -1,4 +1,4 @@
3369 -<?xml version="1.0" encoding="UTF-8"?>
3370 +<?xml version='1.0' encoding='UTF-8'?>
3371 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3372 <pkgmetadata>
3373 <maintainer type="project">
3374
3375 diff --git a/sci-chemistry/rosetta-tools/metadata.xml b/sci-chemistry/rosetta-tools/metadata.xml
3376 index fa775fc97..3d6594808 100644
3377 --- a/sci-chemistry/rosetta-tools/metadata.xml
3378 +++ b/sci-chemistry/rosetta-tools/metadata.xml
3379 @@ -1,4 +1,4 @@
3380 -<?xml version="1.0" encoding="UTF-8"?>
3381 +<?xml version='1.0' encoding='UTF-8'?>
3382 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3383 <pkgmetadata>
3384 <maintainer type="project">
3385
3386 diff --git a/sci-electronics/minipro/metadata.xml b/sci-electronics/minipro/metadata.xml
3387 index c5ec74eb7..35f8f7cd4 100644
3388 --- a/sci-electronics/minipro/metadata.xml
3389 +++ b/sci-electronics/minipro/metadata.xml
3390 @@ -1,4 +1,4 @@
3391 -<?xml version="1.0" encoding="UTF-8"?>
3392 +<?xml version='1.0' encoding='UTF-8'?>
3393 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3394 <pkgmetadata>
3395 <maintainer type="project">
3396
3397 diff --git a/sci-electronics/player/metadata.xml b/sci-electronics/player/metadata.xml
3398 index f4fe34e7b..f6e040f1e 100644
3399 --- a/sci-electronics/player/metadata.xml
3400 +++ b/sci-electronics/player/metadata.xml
3401 @@ -1,4 +1,4 @@
3402 -<?xml version="1.0" encoding="UTF-8"?>
3403 +<?xml version='1.0' encoding='UTF-8'?>
3404 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3405 <pkgmetadata>
3406 <maintainer type="project">
3407
3408 diff --git a/sci-electronics/stage/metadata.xml b/sci-electronics/stage/metadata.xml
3409 index 21b7cf292..8dfe10e85 100644
3410 --- a/sci-electronics/stage/metadata.xml
3411 +++ b/sci-electronics/stage/metadata.xml
3412 @@ -1,4 +1,4 @@
3413 -<?xml version="1.0" encoding="UTF-8"?>
3414 +<?xml version='1.0' encoding='UTF-8'?>
3415 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3416 <pkgmetadata>
3417 <maintainer type="project">
3418
3419 diff --git a/sci-electronics/tnt/metadata.xml b/sci-electronics/tnt/metadata.xml
3420 index 4422f5d6e..892756178 100644
3421 --- a/sci-electronics/tnt/metadata.xml
3422 +++ b/sci-electronics/tnt/metadata.xml
3423 @@ -1,4 +1,4 @@
3424 -<?xml version="1.0" encoding="UTF-8"?>
3425 +<?xml version='1.0' encoding='UTF-8'?>
3426 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3427 <pkgmetadata>
3428 <maintainer type="project">
3429
3430 diff --git a/sci-geosciences/pydap/metadata.xml b/sci-geosciences/pydap/metadata.xml
3431 index 7ab561242..35bc07d09 100644
3432 --- a/sci-geosciences/pydap/metadata.xml
3433 +++ b/sci-geosciences/pydap/metadata.xml
3434 @@ -1,4 +1,4 @@
3435 -<?xml version="1.0" encoding="UTF-8"?>
3436 +<?xml version='1.0' encoding='UTF-8'?>
3437 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3438 <pkgmetadata>
3439 <maintainer type="person">
3440 @@ -11,7 +11,7 @@
3441 </maintainer>
3442 <longdescription lang="en">
3443 Pydap is a pure Python library implementing the Data Access Protocol.
3444 -</longdescription>
3445 + </longdescription>
3446 <upstream>
3447 <remote-id type="pypi">Pydap</remote-id>
3448 </upstream>
3449
3450 diff --git a/sci-geosciences/pydap_handlers_cdms/metadata.xml b/sci-geosciences/pydap_handlers_cdms/metadata.xml
3451 index 2cf9da170..925bead0a 100644
3452 --- a/sci-geosciences/pydap_handlers_cdms/metadata.xml
3453 +++ b/sci-geosciences/pydap_handlers_cdms/metadata.xml
3454 @@ -1,4 +1,4 @@
3455 -<?xml version="1.0" encoding="UTF-8"?>
3456 +<?xml version='1.0' encoding='UTF-8'?>
3457 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3458 <pkgmetadata>
3459 <maintainer type="person">
3460 @@ -12,7 +12,7 @@
3461 <longdescription lang="en">
3462 Pydap is a pure Python library implementing the Data Access Protocol.
3463 pydap_handlers_cdms allows Pydap server to serve GRADS formatted files.
3464 -</longdescription>
3465 + </longdescription>
3466 <upstream>
3467 <remote-id type="pypi">pydap.handlers.cdms</remote-id>
3468 </upstream>
3469
3470 diff --git a/sci-geosciences/pydap_handlers_csv/metadata.xml b/sci-geosciences/pydap_handlers_csv/metadata.xml
3471 index aefbff08c..3dd98b3b7 100644
3472 --- a/sci-geosciences/pydap_handlers_csv/metadata.xml
3473 +++ b/sci-geosciences/pydap_handlers_csv/metadata.xml
3474 @@ -1,4 +1,4 @@
3475 -<?xml version="1.0" encoding="UTF-8"?>
3476 +<?xml version='1.0' encoding='UTF-8'?>
3477 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3478 <pkgmetadata>
3479 <maintainer type="person">
3480 @@ -12,7 +12,7 @@
3481 <longdescription lang="en">
3482 Pydap is a pure Python library implementing the Data Access Protocol.
3483 pydap_handlers_csv allows Pydap server to serve CSV formatted files.
3484 -</longdescription>
3485 + </longdescription>
3486 <upstream>
3487 <remote-id type="pypi">pydap.handlers.csv</remote-id>
3488 </upstream>
3489
3490 diff --git a/sci-geosciences/pydap_handlers_hdf5/metadata.xml b/sci-geosciences/pydap_handlers_hdf5/metadata.xml
3491 index 3c284fac6..011fb0cc9 100644
3492 --- a/sci-geosciences/pydap_handlers_hdf5/metadata.xml
3493 +++ b/sci-geosciences/pydap_handlers_hdf5/metadata.xml
3494 @@ -1,4 +1,4 @@
3495 -<?xml version="1.0" encoding="UTF-8"?>
3496 +<?xml version='1.0' encoding='UTF-8'?>
3497 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3498 <pkgmetadata>
3499 <maintainer type="person">
3500 @@ -12,7 +12,7 @@
3501 <longdescription lang="en">
3502 Pydap is a pure Python library implementing the Data Access Protocol.
3503 pydap_handlers_hdf5 allows Pydap server to serve hdf5 formatted files.
3504 -</longdescription>
3505 + </longdescription>
3506 <upstream>
3507 <remote-id type="pypi">pydap.handlers.hdf5</remote-id>
3508 </upstream>
3509
3510 diff --git a/sci-geosciences/pydap_handlers_nca/metadata.xml b/sci-geosciences/pydap_handlers_nca/metadata.xml
3511 index ff2895a69..eabcc1cd3 100644
3512 --- a/sci-geosciences/pydap_handlers_nca/metadata.xml
3513 +++ b/sci-geosciences/pydap_handlers_nca/metadata.xml
3514 @@ -1,4 +1,4 @@
3515 -<?xml version="1.0" encoding="UTF-8"?>
3516 +<?xml version='1.0' encoding='UTF-8'?>
3517 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3518 <pkgmetadata>
3519 <maintainer type="person">
3520 @@ -12,7 +12,7 @@
3521 <longdescription lang="en">
3522 Pydap is a pure Python library implementing the Data Access Protocol.
3523 pydap_handlers_nca allows Pydap server to serve aggregated NetCDF formatted files.
3524 -</longdescription>
3525 + </longdescription>
3526 <upstream>
3527 <remote-id type="pypi">pydap.handlers.nca</remote-id>
3528 </upstream>
3529
3530 diff --git a/sci-geosciences/pydap_handlers_netcdf/metadata.xml b/sci-geosciences/pydap_handlers_netcdf/metadata.xml
3531 index f0ac58a43..de6bf5fbd 100644
3532 --- a/sci-geosciences/pydap_handlers_netcdf/metadata.xml
3533 +++ b/sci-geosciences/pydap_handlers_netcdf/metadata.xml
3534 @@ -1,4 +1,4 @@
3535 -<?xml version="1.0" encoding="UTF-8"?>
3536 +<?xml version='1.0' encoding='UTF-8'?>
3537 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3538 <pkgmetadata>
3539 <maintainer type="person">
3540 @@ -12,7 +12,7 @@
3541 <longdescription lang="en">
3542 Pydap is a pure Python library implementing the Data Access Protocol.
3543 pydap_handlers_netcdf allows Pydap server to serve NetCDF formatted files.
3544 -</longdescription>
3545 + </longdescription>
3546 <upstream>
3547 <remote-id type="pypi">pydap.handlers.netcdf</remote-id>
3548 </upstream>
3549
3550 diff --git a/sci-geosciences/pydap_handlers_proxy/metadata.xml b/sci-geosciences/pydap_handlers_proxy/metadata.xml
3551 index aaaa997b1..3e3f499fd 100644
3552 --- a/sci-geosciences/pydap_handlers_proxy/metadata.xml
3553 +++ b/sci-geosciences/pydap_handlers_proxy/metadata.xml
3554 @@ -1,4 +1,4 @@
3555 -<?xml version="1.0" encoding="UTF-8"?>
3556 +<?xml version='1.0' encoding='UTF-8'?>
3557 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3558 <pkgmetadata>
3559 <maintainer type="person">
3560 @@ -12,7 +12,7 @@
3561 <longdescription lang="en">
3562 Pydap is a pure Python library implementing the Data Access Protocol.
3563 pydap_handlers_proxy allows Pydap server to serve data from other web sites.
3564 -</longdescription>
3565 + </longdescription>
3566 <upstream>
3567 <remote-id type="pypi">pydap.handlers.proxy</remote-id>
3568 </upstream>
3569
3570 diff --git a/sci-geosciences/pydap_handlers_sql/metadata.xml b/sci-geosciences/pydap_handlers_sql/metadata.xml
3571 index c34bad9b7..052f208ec 100644
3572 --- a/sci-geosciences/pydap_handlers_sql/metadata.xml
3573 +++ b/sci-geosciences/pydap_handlers_sql/metadata.xml
3574 @@ -1,4 +1,4 @@
3575 -<?xml version="1.0" encoding="UTF-8"?>
3576 +<?xml version='1.0' encoding='UTF-8'?>
3577 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3578 <pkgmetadata>
3579 <maintainer type="person">
3580 @@ -12,7 +12,7 @@
3581 <longdescription lang="en">
3582 Pydap is a pure Python library implementing the Data Access Protocol.
3583 pydap_handlers_sql allows Pydap server to serve data from SQL databases.
3584 -</longdescription>
3585 + </longdescription>
3586 <upstream>
3587 <remote-id type="pypi">pydap.handlers.sql</remote-id>
3588 </upstream>
3589
3590 diff --git a/sci-geosciences/pydap_handlers_sqlite/metadata.xml b/sci-geosciences/pydap_handlers_sqlite/metadata.xml
3591 index b6d9d280d..22de7b516 100644
3592 --- a/sci-geosciences/pydap_handlers_sqlite/metadata.xml
3593 +++ b/sci-geosciences/pydap_handlers_sqlite/metadata.xml
3594 @@ -1,4 +1,4 @@
3595 -<?xml version="1.0" encoding="UTF-8"?>
3596 +<?xml version='1.0' encoding='UTF-8'?>
3597 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3598 <pkgmetadata>
3599 <maintainer type="person">
3600 @@ -12,7 +12,7 @@
3601 <longdescription lang="en">
3602 Pydap is a pure Python library implementing the Data Access Protocol.
3603 pydap_handlers_sqlite allows Pydap server to serve data from SQLite files.
3604 -</longdescription>
3605 + </longdescription>
3606 <upstream>
3607 <remote-id type="pypi">pydap.handlers.sqlite</remote-id>
3608 </upstream>
3609
3610 diff --git a/sci-geosciences/pydap_responses_kml/metadata.xml b/sci-geosciences/pydap_responses_kml/metadata.xml
3611 index 4f434c870..b6268e323 100644
3612 --- a/sci-geosciences/pydap_responses_kml/metadata.xml
3613 +++ b/sci-geosciences/pydap_responses_kml/metadata.xml
3614 @@ -1,4 +1,4 @@
3615 -<?xml version="1.0" encoding="UTF-8"?>
3616 +<?xml version='1.0' encoding='UTF-8'?>
3617 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3618 <pkgmetadata>
3619 <maintainer type="person">
3620 @@ -13,7 +13,7 @@
3621 Pydap is a pure Python library implementing the Data Access Protocol.
3622 pydap_responses_kml allows Pydap server to use Google Earth to visualize
3623 data.
3624 -</longdescription>
3625 + </longdescription>
3626 <upstream>
3627 <remote-id type="pypi">pydap.responses.kml</remote-id>
3628 </upstream>
3629
3630 diff --git a/sci-geosciences/pydap_responses_matlab/metadata.xml b/sci-geosciences/pydap_responses_matlab/metadata.xml
3631 index c373db324..8f1b6dc9c 100644
3632 --- a/sci-geosciences/pydap_responses_matlab/metadata.xml
3633 +++ b/sci-geosciences/pydap_responses_matlab/metadata.xml
3634 @@ -1,4 +1,4 @@
3635 -<?xml version="1.0" encoding="UTF-8"?>
3636 +<?xml version='1.0' encoding='UTF-8'?>
3637 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3638 <pkgmetadata>
3639 <maintainer type="person">
3640 @@ -12,7 +12,7 @@
3641 <longdescription lang="en">
3642 Pydap is a pure Python library implementing the Data Access Protocol.
3643 pydap_responses_matlab allows Pydap server to deliver data to Matlab.
3644 -</longdescription>
3645 + </longdescription>
3646 <upstream>
3647 <remote-id type="pypi">pydap.responses.matlab</remote-id>
3648 </upstream>
3649
3650 diff --git a/sci-geosciences/pydap_responses_netcdf/metadata.xml b/sci-geosciences/pydap_responses_netcdf/metadata.xml
3651 index 5961ef322..79bf09ab5 100644
3652 --- a/sci-geosciences/pydap_responses_netcdf/metadata.xml
3653 +++ b/sci-geosciences/pydap_responses_netcdf/metadata.xml
3654 @@ -1,4 +1,4 @@
3655 -<?xml version="1.0" encoding="UTF-8"?>
3656 +<?xml version='1.0' encoding='UTF-8'?>
3657 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3658 <pkgmetadata>
3659 <maintainer type="person">
3660 @@ -12,7 +12,7 @@
3661 <longdescription lang="en">
3662 Pydap is a pure Python library implementing the Data Access Protocol.
3663 pydap_responses_netcdf allows Pydap server to serve NetCDF formatted files.
3664 -</longdescription>
3665 + </longdescription>
3666 <upstream>
3667 <remote-id type="pypi">pydap.responses.netcdf</remote-id>
3668 </upstream>
3669
3670 diff --git a/sci-geosciences/pydap_responses_wms/metadata.xml b/sci-geosciences/pydap_responses_wms/metadata.xml
3671 index 412e8bec8..3f0ffe7a7 100644
3672 --- a/sci-geosciences/pydap_responses_wms/metadata.xml
3673 +++ b/sci-geosciences/pydap_responses_wms/metadata.xml
3674 @@ -1,4 +1,4 @@
3675 -<?xml version="1.0" encoding="UTF-8"?>
3676 +<?xml version='1.0' encoding='UTF-8'?>
3677 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3678 <pkgmetadata>
3679 <maintainer type="person">
3680 @@ -13,7 +13,7 @@
3681 Pydap is a pure Python library implementing the Data Access Protocol.
3682 pydap_responses_wms allows Pydap server to deliver maps via Web Mapping
3683 Service protocol.
3684 -</longdescription>
3685 + </longdescription>
3686 <upstream>
3687 <remote-id type="pypi">pydap.responses.wms</remote-id>
3688 </upstream>
3689
3690 diff --git a/sci-geosciences/pydap_responses_xls/metadata.xml b/sci-geosciences/pydap_responses_xls/metadata.xml
3691 index 635bb948a..95202601c 100644
3692 --- a/sci-geosciences/pydap_responses_xls/metadata.xml
3693 +++ b/sci-geosciences/pydap_responses_xls/metadata.xml
3694 @@ -1,4 +1,4 @@
3695 -<?xml version="1.0" encoding="UTF-8"?>
3696 +<?xml version='1.0' encoding='UTF-8'?>
3697 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3698 <pkgmetadata>
3699 <maintainer type="person">
3700 @@ -13,7 +13,7 @@
3701 Pydap is a pure Python library implementing the Data Access Protocol.
3702 pydap_responses_xls allows Pydap server to deliver an Excel file of the
3703 data.
3704 -</longdescription>
3705 + </longdescription>
3706 <upstream>
3707 <remote-id type="pypi">pydap.responses.xls</remote-id>
3708 </upstream>
3709
3710 diff --git a/sci-libs/armadillo/metadata.xml b/sci-libs/armadillo/metadata.xml
3711 index 9c376182e..140530ac3 100644
3712 --- a/sci-libs/armadillo/metadata.xml
3713 +++ b/sci-libs/armadillo/metadata.xml
3714 @@ -1,4 +1,4 @@
3715 -<?xml version="1.0" encoding="UTF-8"?>
3716 +<?xml version='1.0' encoding='UTF-8'?>
3717 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3718 <pkgmetadata>
3719 <maintainer type="project">
3720 @@ -16,7 +16,7 @@
3721 combine several operations into one and reduce (or eliminate) the
3722 need for temporaries. This is accomplished through recursive
3723 templates and template meta-programming.
3724 -</longdescription>
3725 + </longdescription>
3726 <use>
3727 <flag name="atlas">
3728 Link with <pkg>sci-libs/atlas</pkg> libraries for cblas and
3729
3730 diff --git a/sci-libs/asl/metadata.xml b/sci-libs/asl/metadata.xml
3731 index 7170c1d21..406d94b4d 100644
3732 --- a/sci-libs/asl/metadata.xml
3733 +++ b/sci-libs/asl/metadata.xml
3734 @@ -1,4 +1,4 @@
3735 -<?xml version="1.0" encoding="UTF-8"?>
3736 +<?xml version='1.0' encoding='UTF-8'?>
3737 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3738 <pkgmetadata>
3739 <maintainer type="person">
3740 @@ -27,7 +27,7 @@ fields: computational fluid dynamics, virtual sensing, industrial
3741 process data validation and reconciliation, image-guided surgery,
3742 computer-aided engineering, design space exploration, crystallography,
3743 etc.
3744 -</longdescription>
3745 + </longdescription>
3746 <use>
3747 <flag name="matlab">Matlab support with <pkg>sci-libs/matio</pkg></flag>
3748 </use>
3749
3750 diff --git a/sci-libs/atlas/metadata.xml b/sci-libs/atlas/metadata.xml
3751 index 79b47d5ae..5fffffdf1 100644
3752 --- a/sci-libs/atlas/metadata.xml
3753 +++ b/sci-libs/atlas/metadata.xml
3754 @@ -1,4 +1,4 @@
3755 -<?xml version="1.0" encoding="UTF-8"?>
3756 +<?xml version='1.0' encoding='UTF-8'?>
3757 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3758 <pkgmetadata>
3759 <maintainer type="project">
3760 @@ -12,7 +12,7 @@
3761 Subroutines (BLAS) for both c and F77 interfaces. It can also build
3762 a subset of the linear algebra routine LAPACK library or the full
3763 LAPACK using the reference LAPACK from Netlib.
3764 -</longdescription>
3765 + </longdescription>
3766 <use>
3767 <flag name="deprecated">Build deprecated routines</flag>
3768 <flag name="generic">Build atlas assuming a fairly generic architecture (sse2 for x86, core2 for amd64)</flag>
3769
3770 diff --git a/sci-libs/cgnstools/metadata.xml b/sci-libs/cgnstools/metadata.xml
3771 index b0a18c553..2f9d93947 100644
3772 --- a/sci-libs/cgnstools/metadata.xml
3773 +++ b/sci-libs/cgnstools/metadata.xml
3774 @@ -1,4 +1,4 @@
3775 -<?xml version="1.0" encoding="UTF-8"?>
3776 +<?xml version='1.0' encoding='UTF-8'?>
3777 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3778 <pkgmetadata>
3779 <maintainer type="project">
3780
3781 diff --git a/sci-libs/clblas/metadata.xml b/sci-libs/clblas/metadata.xml
3782 index cad01ed8b..7a91a3efe 100644
3783 --- a/sci-libs/clblas/metadata.xml
3784 +++ b/sci-libs/clblas/metadata.xml
3785 @@ -1,4 +1,4 @@
3786 -<?xml version="1.0" encoding="UTF-8"?>
3787 +<?xml version='1.0' encoding='UTF-8'?>
3788 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3789 <pkgmetadata>
3790 <maintainer type="project">
3791
3792 diff --git a/sci-libs/clfft/metadata.xml b/sci-libs/clfft/metadata.xml
3793 index b331d3e41..659e5bb01 100644
3794 --- a/sci-libs/clfft/metadata.xml
3795 +++ b/sci-libs/clfft/metadata.xml
3796 @@ -1,4 +1,4 @@
3797 -<?xml version="1.0" encoding="UTF-8"?>
3798 +<?xml version='1.0' encoding='UTF-8'?>
3799 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3800 <pkgmetadata>
3801 <maintainer type="person">
3802
3803 diff --git a/sci-libs/clrng/metadata.xml b/sci-libs/clrng/metadata.xml
3804 index 261dee59c..c6c675038 100644
3805 --- a/sci-libs/clrng/metadata.xml
3806 +++ b/sci-libs/clrng/metadata.xml
3807 @@ -1,4 +1,4 @@
3808 -<?xml version="1.0" encoding="UTF-8"?>
3809 +<?xml version='1.0' encoding='UTF-8'?>
3810 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3811 <pkgmetadata>
3812 <maintainer type="project">
3813
3814 diff --git a/sci-libs/dealii/metadata.xml b/sci-libs/dealii/metadata.xml
3815 index d00e3daa5..056a02aab 100644
3816 --- a/sci-libs/dealii/metadata.xml
3817 +++ b/sci-libs/dealii/metadata.xml
3818 @@ -1,4 +1,4 @@
3819 -<?xml version="1.0" encoding="UTF-8"?>
3820 +<?xml version='1.0' encoding='UTF-8'?>
3821 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3822 <pkgmetadata>
3823 <maintainer type="person">
3824
3825 diff --git a/sci-libs/elmer-eio/metadata.xml b/sci-libs/elmer-eio/metadata.xml
3826 index 74cf8e43e..cab7f518f 100644
3827 --- a/sci-libs/elmer-eio/metadata.xml
3828 +++ b/sci-libs/elmer-eio/metadata.xml
3829 @@ -1,4 +1,4 @@
3830 -<?xml version="1.0" encoding="UTF-8"?>
3831 +<?xml version='1.0' encoding='UTF-8'?>
3832 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3833 <pkgmetadata>
3834 <maintainer type="project">
3835 @@ -6,6 +6,6 @@
3836 <name>Gentoo Science Project</name>
3837 </maintainer>
3838 <upstream>
3839 - <remote-id type="sourceforge">elmerfem.svn</remote-id>
3840 + <remote-id type="sourceforge">svn</remote-id>
3841 </upstream>
3842 </pkgmetadata>
3843
3844 diff --git a/sci-libs/elmer-hutiter/metadata.xml b/sci-libs/elmer-hutiter/metadata.xml
3845 index 74cf8e43e..cab7f518f 100644
3846 --- a/sci-libs/elmer-hutiter/metadata.xml
3847 +++ b/sci-libs/elmer-hutiter/metadata.xml
3848 @@ -1,4 +1,4 @@
3849 -<?xml version="1.0" encoding="UTF-8"?>
3850 +<?xml version='1.0' encoding='UTF-8'?>
3851 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3852 <pkgmetadata>
3853 <maintainer type="project">
3854 @@ -6,6 +6,6 @@
3855 <name>Gentoo Science Project</name>
3856 </maintainer>
3857 <upstream>
3858 - <remote-id type="sourceforge">elmerfem.svn</remote-id>
3859 + <remote-id type="sourceforge">svn</remote-id>
3860 </upstream>
3861 </pkgmetadata>
3862
3863 diff --git a/sci-libs/framewave/metadata.xml b/sci-libs/framewave/metadata.xml
3864 index 51caca683..ca9638e58 100644
3865 --- a/sci-libs/framewave/metadata.xml
3866 +++ b/sci-libs/framewave/metadata.xml
3867 @@ -1,4 +1,4 @@
3868 -<?xml version="1.0" encoding="UTF-8"?>
3869 +<?xml version='1.0' encoding='UTF-8'?>
3870 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3871 <pkgmetadata>
3872 <maintainer type="project">
3873
3874 diff --git a/sci-libs/geom/metadata.xml b/sci-libs/geom/metadata.xml
3875 index d322fedbb..1c94e0081 100644
3876 --- a/sci-libs/geom/metadata.xml
3877 +++ b/sci-libs/geom/metadata.xml
3878 @@ -1,4 +1,4 @@
3879 -<?xml version="1.0" encoding="UTF-8"?>
3880 +<?xml version='1.0' encoding='UTF-8'?>
3881 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3882 <pkgmetadata>
3883 <maintainer type="project">
3884
3885 diff --git a/sci-libs/ghmm/metadata.xml b/sci-libs/ghmm/metadata.xml
3886 index e6d6c6c89..985e58deb 100644
3887 --- a/sci-libs/ghmm/metadata.xml
3888 +++ b/sci-libs/ghmm/metadata.xml
3889 @@ -1,4 +1,4 @@
3890 -<?xml version="1.0" encoding="UTF-8"?>
3891 +<?xml version='1.0' encoding='UTF-8'?>
3892 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3893 <pkgmetadata>
3894 <maintainer type="project">
3895
3896 diff --git a/sci-libs/htslib/metadata.xml b/sci-libs/htslib/metadata.xml
3897 index 5b953af48..49735ee17 100644
3898 --- a/sci-libs/htslib/metadata.xml
3899 +++ b/sci-libs/htslib/metadata.xml
3900 @@ -1,4 +1,4 @@
3901 -<?xml version="1.0" encoding="UTF-8"?>
3902 +<?xml version='1.0' encoding='UTF-8'?>
3903 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3904 <pkgmetadata>
3905 <maintainer type="project">
3906
3907 diff --git a/sci-libs/io_lib/metadata.xml b/sci-libs/io_lib/metadata.xml
3908 index a88279ec5..9012caf9b 100644
3909 --- a/sci-libs/io_lib/metadata.xml
3910 +++ b/sci-libs/io_lib/metadata.xml
3911 @@ -1,4 +1,4 @@
3912 -<?xml version="1.0" encoding="UTF-8"?>
3913 +<?xml version='1.0' encoding='UTF-8'?>
3914 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3915 <pkgmetadata>
3916 <maintainer type="project">
3917 @@ -10,7 +10,7 @@
3918 general purpose trace file (and Experiment File) reading interface. The
3919 programmer simply calls the (eg) read_reading to create a "Read" C structure
3920 with the data loaded into memory.
3921 -</longdescription>
3922 + </longdescription>
3923 <upstream>
3924 <remote-id type="sourceforge">staden</remote-id>
3925 </upstream>
3926
3927 diff --git a/sci-libs/itk/metadata.xml b/sci-libs/itk/metadata.xml
3928 index 85453b5c2..b7fbbe52f 100644
3929 --- a/sci-libs/itk/metadata.xml
3930 +++ b/sci-libs/itk/metadata.xml
3931 @@ -1,4 +1,4 @@
3932 -<?xml version="1.0" encoding="UTF-8"?>
3933 +<?xml version='1.0' encoding='UTF-8'?>
3934 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3935 <pkgmetadata>
3936 <maintainer type="project">
3937 @@ -12,7 +12,7 @@
3938 Insight Segmentation and Registration Toolkit (ITK) is a library
3939 that provides developers with an extensive suite of tools for image
3940 analysis.
3941 -</longdescription>
3942 + </longdescription>
3943 <use>
3944 <flag name="itkv3compat">Enable compatibility with ITK version 3</flag>
3945 <flag name="review">Enable compilation of methods under review</flag>
3946
3947 diff --git a/sci-libs/k3match/metadata.xml b/sci-libs/k3match/metadata.xml
3948 index 9165eac65..8e26a7cc2 100644
3949 --- a/sci-libs/k3match/metadata.xml
3950 +++ b/sci-libs/k3match/metadata.xml
3951 @@ -1,4 +1,4 @@
3952 -<?xml version="1.0" encoding="UTF-8"?>
3953 +<?xml version='1.0' encoding='UTF-8'?>
3954 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3955 <pkgmetadata>
3956 <maintainer type="person">
3957 @@ -9,7 +9,4 @@
3958 <email>sci@g.o</email>
3959 <name>Gentoo Science Project</name>
3960 </maintainer>
3961 - <upstream>
3962 - <remote-id type="github">pschella/k3match</remote-id>
3963 - </upstream>
3964 </pkgmetadata>
3965
3966 diff --git a/sci-libs/lapackpp/metadata.xml b/sci-libs/lapackpp/metadata.xml
3967 index b3d88baf7..af87df9d1 100644
3968 --- a/sci-libs/lapackpp/metadata.xml
3969 +++ b/sci-libs/lapackpp/metadata.xml
3970 @@ -1,4 +1,4 @@
3971 -<?xml version="1.0" encoding="UTF-8"?>
3972 +<?xml version='1.0' encoding='UTF-8'?>
3973 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3974 <pkgmetadata>
3975 <maintainer type="project">
3976 @@ -15,8 +15,8 @@
3977 include all of the capabilities of original f77 LAPACK. Emphasis is
3978 given to routines for solving linear systems consisting of non-symmetric
3979 matrices, symmetric positive definite systems, and solving linear
3980 - least-square systems.
3981 -</longdescription>
3982 + least-square systems.
3983 + </longdescription>
3984 <upstream>
3985 <remote-id type="sourceforge">lapackpp</remote-id>
3986 </upstream>
3987
3988 diff --git a/sci-libs/libcgnsoo/metadata.xml b/sci-libs/libcgnsoo/metadata.xml
3989 index b501da7f8..9954178df 100644
3990 --- a/sci-libs/libcgnsoo/metadata.xml
3991 +++ b/sci-libs/libcgnsoo/metadata.xml
3992 @@ -1,4 +1,4 @@
3993 -<?xml version="1.0" encoding="UTF-8"?>
3994 +<?xml version='1.0' encoding='UTF-8'?>
3995 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
3996 <pkgmetadata>
3997 <maintainer type="project">
3998
3999 diff --git a/sci-libs/libmaus/metadata.xml b/sci-libs/libmaus/metadata.xml
4000 index 1541e62b3..daa058d7d 100644
4001 --- a/sci-libs/libmaus/metadata.xml
4002 +++ b/sci-libs/libmaus/metadata.xml
4003 @@ -1,4 +1,4 @@
4004 -<?xml version="1.0" encoding="UTF-8"?>
4005 +<?xml version='1.0' encoding='UTF-8'?>
4006 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4007 <pkgmetadata>
4008 <maintainer type="project">
4009 @@ -13,7 +13,7 @@ I/O classes (single byte and UTF-8)
4010 text indexing classes (suffix and LCP array, fulltext and minute (FM), ...)
4011 BAM sequence alignment files input/output (simple and collating)
4012 and many lower level support classes.
4013 -</longdescription>
4014 + </longdescription>
4015 <upstream>
4016 <remote-id type="github">gt1/libmaus</remote-id>
4017 </upstream>
4018
4019 diff --git a/sci-libs/libmaus2/metadata.xml b/sci-libs/libmaus2/metadata.xml
4020 index 1541e62b3..daa058d7d 100644
4021 --- a/sci-libs/libmaus2/metadata.xml
4022 +++ b/sci-libs/libmaus2/metadata.xml
4023 @@ -1,4 +1,4 @@
4024 -<?xml version="1.0" encoding="UTF-8"?>
4025 +<?xml version='1.0' encoding='UTF-8'?>
4026 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4027 <pkgmetadata>
4028 <maintainer type="project">
4029 @@ -13,7 +13,7 @@ I/O classes (single byte and UTF-8)
4030 text indexing classes (suffix and LCP array, fulltext and minute (FM), ...)
4031 BAM sequence alignment files input/output (simple and collating)
4032 and many lower level support classes.
4033 -</longdescription>
4034 + </longdescription>
4035 <upstream>
4036 <remote-id type="github">gt1/libmaus</remote-id>
4037 </upstream>
4038
4039 diff --git a/sci-libs/libsc/metadata.xml b/sci-libs/libsc/metadata.xml
4040 index 21ede2e1f..eb239a19e 100644
4041 --- a/sci-libs/libsc/metadata.xml
4042 +++ b/sci-libs/libsc/metadata.xml
4043 @@ -1,4 +1,4 @@
4044 -<?xml version="1.0" encoding="UTF-8"?>
4045 +<?xml version='1.0' encoding='UTF-8'?>
4046 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4047 <pkgmetadata>
4048 <maintainer type="person">
4049
4050 diff --git a/sci-libs/libsufr/metadata.xml b/sci-libs/libsufr/metadata.xml
4051 index b3a575f0a..77b842c6e 100644
4052 --- a/sci-libs/libsufr/metadata.xml
4053 +++ b/sci-libs/libsufr/metadata.xml
4054 @@ -1,4 +1,4 @@
4055 -<?xml version="1.0" encoding="UTF-8"?>
4056 +<?xml version='1.0' encoding='UTF-8'?>
4057 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4058 <pkgmetadata>
4059 <maintainer type="person">
4060
4061 diff --git a/sci-libs/lwpr/metadata.xml b/sci-libs/lwpr/metadata.xml
4062 index d7f4e4aad..3ddf78275 100644
4063 --- a/sci-libs/lwpr/metadata.xml
4064 +++ b/sci-libs/lwpr/metadata.xml
4065 @@ -1,4 +1,4 @@
4066 -<?xml version="1.0" encoding="UTF-8"?>
4067 +<?xml version='1.0' encoding='UTF-8'?>
4068 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4069 <pkgmetadata>
4070 <maintainer type="project">
4071 @@ -13,7 +13,7 @@
4072 regressions in selected directions in input space. A locally
4073 weighted variant of Partial Least Squares (PLS) is employed for
4074 doing the dimensionality reduction.
4075 -</longdescription>
4076 + </longdescription>
4077 <use>
4078 <flag name="octave">Add <pkg>sci-mathematics/octave</pkg> support</flag>
4079 </use>
4080
4081 diff --git a/sci-libs/matc/metadata.xml b/sci-libs/matc/metadata.xml
4082 index 271c39301..9a3b4d3ec 100644
4083 --- a/sci-libs/matc/metadata.xml
4084 +++ b/sci-libs/matc/metadata.xml
4085 @@ -1,4 +1,4 @@
4086 -<?xml version="1.0" encoding="UTF-8"?>
4087 +<?xml version='1.0' encoding='UTF-8'?>
4088 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4089 <pkgmetadata>
4090 <maintainer type="project">
4091 @@ -7,6 +7,6 @@
4092 </maintainer>
4093 <upstream>
4094 <remote-id type="github">ElmerCSC/elmerfem</remote-id>
4095 - <remote-id type="sourceforge">elmerfem.svn</remote-id>
4096 + <remote-id type="sourceforge">svn</remote-id>
4097 </upstream>
4098 </pkgmetadata>
4099
4100 diff --git a/sci-libs/nibabel/metadata.xml b/sci-libs/nibabel/metadata.xml
4101 index 776617edf..be9e6a4cc 100644
4102 --- a/sci-libs/nibabel/metadata.xml
4103 +++ b/sci-libs/nibabel/metadata.xml
4104 @@ -1,4 +1,4 @@
4105 -<?xml version="1.0" encoding="UTF-8"?>
4106 +<?xml version='1.0' encoding='UTF-8'?>
4107 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4108 <pkgmetadata>
4109 <maintainer type="person">
4110
4111 diff --git a/sci-libs/nipy/metadata.xml b/sci-libs/nipy/metadata.xml
4112 index 511564029..940d59042 100644
4113 --- a/sci-libs/nipy/metadata.xml
4114 +++ b/sci-libs/nipy/metadata.xml
4115 @@ -1,4 +1,4 @@
4116 -<?xml version="1.0" encoding="UTF-8"?>
4117 +<?xml version='1.0' encoding='UTF-8'?>
4118 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4119 <pkgmetadata>
4120 <maintainer type="person">
4121 @@ -11,7 +11,7 @@
4122 </maintainer>
4123 <longdescription lang="en">
4124 NIPY is a python project for analysis of structural and functional neuroimaging data.
4125 -</longdescription>
4126 + </longdescription>
4127 <upstream>
4128 <remote-id type="pypi">nipy</remote-id>
4129 </upstream>
4130
4131 diff --git a/sci-libs/nipype/metadata.xml b/sci-libs/nipype/metadata.xml
4132 index 8e5a54081..f63021cf6 100644
4133 --- a/sci-libs/nipype/metadata.xml
4134 +++ b/sci-libs/nipype/metadata.xml
4135 @@ -22,7 +22,7 @@
4136 in a high-level language and addressing limitations of existing pipeline systems.
4137 </longdescription>
4138 <upstream>
4139 - <remote-id type="sourceforge">nipy</remote-id>
4140 <remote-id type="github">nipy/nipype</remote-id>
4141 + <remote-id type="sourceforge">nipy</remote-id>
4142 </upstream>
4143 </pkgmetadata>
4144
4145 diff --git a/sci-libs/o2scl/metadata.xml b/sci-libs/o2scl/metadata.xml
4146 index 15261a796..a4a37b48d 100644
4147 --- a/sci-libs/o2scl/metadata.xml
4148 +++ b/sci-libs/o2scl/metadata.xml
4149 @@ -1,4 +1,4 @@
4150 -<?xml version="1.0" encoding="UTF-8"?>
4151 +<?xml version='1.0' encoding='UTF-8'?>
4152 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4153 <pkgmetadata>
4154 <maintainer type="project">
4155 @@ -11,7 +11,7 @@
4156 GSL and CERNLIB and two sub-libraries: thermodynamics of ideal and
4157 nearly-ideal particles with quantum statistics and e quations of
4158 state for finite density relevant for neutron stars.
4159 -</longdescription>
4160 + </longdescription>
4161 <upstream>
4162 <remote-id type="sourceforge">o2scl</remote-id>
4163 </upstream>
4164
4165 diff --git a/sci-libs/openblas/metadata.xml b/sci-libs/openblas/metadata.xml
4166 index 2bf0b4229..1f64b9df9 100644
4167 --- a/sci-libs/openblas/metadata.xml
4168 +++ b/sci-libs/openblas/metadata.xml
4169 @@ -1,4 +1,4 @@
4170 -<?xml version="1.0" encoding="UTF-8"?>
4171 +<?xml version='1.0' encoding='UTF-8'?>
4172 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4173 <pkgmetadata>
4174 <maintainer type="project">
4175
4176 diff --git a/sci-libs/p4est/metadata.xml b/sci-libs/p4est/metadata.xml
4177 index 35ac42b01..a7e30547b 100644
4178 --- a/sci-libs/p4est/metadata.xml
4179 +++ b/sci-libs/p4est/metadata.xml
4180 @@ -1,4 +1,4 @@
4181 -<?xml version="1.0" encoding="UTF-8"?>
4182 +<?xml version='1.0' encoding='UTF-8'?>
4183 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4184 <pkgmetadata>
4185 <maintainer type="person">
4186
4187 diff --git a/sci-libs/pagmo/metadata.xml b/sci-libs/pagmo/metadata.xml
4188 index 23ef3708a..744582709 100644
4189 --- a/sci-libs/pagmo/metadata.xml
4190 +++ b/sci-libs/pagmo/metadata.xml
4191 @@ -1,4 +1,4 @@
4192 -<?xml version="1.0" encoding="UTF-8"?>
4193 +<?xml version='1.0' encoding='UTF-8'?>
4194 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4195 <pkgmetadata>
4196 <maintainer type="project">
4197
4198 diff --git a/sci-libs/pg2plplot/metadata.xml b/sci-libs/pg2plplot/metadata.xml
4199 index a5b8e410d..30b426c5c 100644
4200 --- a/sci-libs/pg2plplot/metadata.xml
4201 +++ b/sci-libs/pg2plplot/metadata.xml
4202 @@ -1,4 +1,4 @@
4203 -<?xml version="1.0" encoding="UTF-8"?>
4204 +<?xml version='1.0' encoding='UTF-8'?>
4205 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4206 <pkgmetadata>
4207 <maintainer type="person">
4208 @@ -12,7 +12,7 @@
4209 <longdescription>
4210 PG2PLplot is code intended to help the transition from Fortran code
4211 linked against PGPlot to linking it against PLplot.
4212 -</longdescription>
4213 + </longdescription>
4214 <upstream>
4215 <remote-id type="sourceforge">pg2plplot</remote-id>
4216 </upstream>
4217
4218 diff --git a/sci-libs/pydicom/metadata.xml b/sci-libs/pydicom/metadata.xml
4219 index 8d1c81632..b38f42e10 100644
4220 --- a/sci-libs/pydicom/metadata.xml
4221 +++ b/sci-libs/pydicom/metadata.xml
4222 @@ -1,4 +1,4 @@
4223 -<?xml version="1.0" encoding="UTF-8"?>
4224 +<?xml version='1.0' encoding='UTF-8'?>
4225 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4226 <pkgmetadata>
4227 <maintainer type="project">
4228
4229 diff --git a/sci-libs/rdkit/metadata.xml b/sci-libs/rdkit/metadata.xml
4230 index e612e1080..92af8f7f1 100644
4231 --- a/sci-libs/rdkit/metadata.xml
4232 +++ b/sci-libs/rdkit/metadata.xml
4233 @@ -1,4 +1,4 @@
4234 -<?xml version="1.0" encoding="UTF-8"?>
4235 +<?xml version='1.0' encoding='UTF-8'?>
4236 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4237 <pkgmetadata>
4238 <maintainer type="person">
4239
4240 diff --git a/sci-libs/scikits_image/metadata.xml b/sci-libs/scikits_image/metadata.xml
4241 index 8e05ce394..f88372407 100644
4242 --- a/sci-libs/scikits_image/metadata.xml
4243 +++ b/sci-libs/scikits_image/metadata.xml
4244 @@ -1,4 +1,4 @@
4245 -<?xml version="1.0" encoding="UTF-8"?>
4246 +<?xml version='1.0' encoding='UTF-8'?>
4247 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4248 <pkgmetadata>
4249 <maintainer type="project">
4250 @@ -10,13 +10,10 @@
4251 algorithms for use with Python and NumPy. While SciPy’s ndimage
4252 provides low-level manipulation, scikits.image centres around
4253 algorithms and applications.
4254 -</longdescription>
4255 + </longdescription>
4256 <use>
4257 <flag name="freeimage">Enable support for image i/o via
4258 - <pkg>media-libs/freeimage</pkg></flag>
4259 + <pkg>media-libs/freeimage</pkg></flag>
4260 <flag name="pyamg">Enable support for algebraic solvers via <pkg>dev-python/pyamg</pkg></flag>
4261 </use>
4262 - <upstream>
4263 - <remote-id type="pypi">scikit-image</remote-id>
4264 - </upstream>
4265 </pkgmetadata>
4266
4267 diff --git a/sci-libs/spglib/metadata.xml b/sci-libs/spglib/metadata.xml
4268 index 4623ab68c..a37ff6fea 100644
4269 --- a/sci-libs/spglib/metadata.xml
4270 +++ b/sci-libs/spglib/metadata.xml
4271 @@ -1,4 +1,4 @@
4272 -<?xml version="1.0" encoding="UTF-8"?>
4273 +<?xml version='1.0' encoding='UTF-8'?>
4274 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4275 <pkgmetadata>
4276 <maintainer type="person">
4277 @@ -13,6 +13,6 @@
4278 Spglib is a C library for finding and handling crystal symmetries.
4279 </longdescription>
4280 <upstream>
4281 - <remote-id type="sourceforge">spglib</remote-id>
4282 + <remote-id type="sourceforge">downloads</remote-id>
4283 </upstream>
4284 </pkgmetadata>
4285
4286 diff --git a/sci-libs/starparse/metadata.xml b/sci-libs/starparse/metadata.xml
4287 index 62e9e440f..1aad99e72 100644
4288 --- a/sci-libs/starparse/metadata.xml
4289 +++ b/sci-libs/starparse/metadata.xml
4290 @@ -1,4 +1,4 @@
4291 -<?xml version="1.0" encoding="UTF-8"?>
4292 +<?xml version='1.0' encoding='UTF-8'?>
4293 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4294 <pkgmetadata>
4295 <maintainer type="project">
4296
4297 diff --git a/sci-libs/symengine/metadata.xml b/sci-libs/symengine/metadata.xml
4298 index 398b34ee0..59ecfed71 100644
4299 --- a/sci-libs/symengine/metadata.xml
4300 +++ b/sci-libs/symengine/metadata.xml
4301 @@ -1,4 +1,4 @@
4302 -<?xml version="1.0" encoding="UTF-8"?>
4303 +<?xml version='1.0' encoding='UTF-8'?>
4304 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4305 <pkgmetadata>
4306 <maintainer type="person">
4307 @@ -12,7 +12,7 @@
4308 <upstream>
4309 <remote-id type="github">sympy/symengine</remote-id>
4310 </upstream>
4311 -<use>
4312 - <flag name="boost">Add support for boost (<pkg>dev-libs/boost</pkg>)</flag>
4313 -</use>
4314 + <use>
4315 + <flag name="boost">Add support for boost (<pkg>dev-libs/boost</pkg>)</flag>
4316 + </use>
4317 </pkgmetadata>
4318
4319 diff --git a/sci-libs/vxl/metadata.xml b/sci-libs/vxl/metadata.xml
4320 index 861740f90..ddb4bcd85 100644
4321 --- a/sci-libs/vxl/metadata.xml
4322 +++ b/sci-libs/vxl/metadata.xml
4323 @@ -1,4 +1,4 @@
4324 -<?xml version="1.0" encoding="UTF-8"?>
4325 +<?xml version='1.0' encoding='UTF-8'?>
4326 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4327 <pkgmetadata>
4328 <maintainer type="project">
4329
4330 diff --git a/sci-libs/wannier90/metadata.xml b/sci-libs/wannier90/metadata.xml
4331 index 425b19557..ad1510a0c 100644
4332 --- a/sci-libs/wannier90/metadata.xml
4333 +++ b/sci-libs/wannier90/metadata.xml
4334 @@ -1,4 +1,4 @@
4335 -<?xml version="1.0" encoding="UTF-8"?>
4336 +<?xml version='1.0' encoding='UTF-8'?>
4337 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4338 <pkgmetadata>
4339 <maintainer type="project">
4340 @@ -16,7 +16,7 @@
4341 as well as its packaging into the Debian and Ubuntu distributions.
4342 </longdescription>
4343 <upstream>
4344 - <doc>http://www.wannier.org/</doc>
4345 - <remote-id type="launchpad">wannier90</remote-id>
4346 + <doc>http://www.wannier.org/</doc>
4347 + <remote-id type="launchpad">wannier90</remote-id>
4348 </upstream>
4349 </pkgmetadata>
4350
4351 diff --git a/sci-libs/xraylib/metadata.xml b/sci-libs/xraylib/metadata.xml
4352 index bac49d7d6..afbaa48db 100644
4353 --- a/sci-libs/xraylib/metadata.xml
4354 +++ b/sci-libs/xraylib/metadata.xml
4355 @@ -1,4 +1,4 @@
4356 -<?xml version="1.0" encoding="UTF-8"?>
4357 +<?xml version='1.0' encoding='UTF-8'?>
4358 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4359 <pkgmetadata>
4360 <maintainer type="person">
4361
4362 diff --git a/sci-libs/zarja/metadata.xml b/sci-libs/zarja/metadata.xml
4363 index e13004628..65abbc3a1 100644
4364 --- a/sci-libs/zarja/metadata.xml
4365 +++ b/sci-libs/zarja/metadata.xml
4366 @@ -1,4 +1,4 @@
4367 -<?xml version="1.0" encoding="UTF-8"?>
4368 +<?xml version='1.0' encoding='UTF-8'?>
4369 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4370 <pkgmetadata>
4371 <maintainer type="project">
4372 @@ -9,7 +9,7 @@
4373 Zarja is open-source library that allows to make multi-agent
4374 simulations on graphs. Its functionality was proved in Classical or
4375 Quantum mechanical models.
4376 -</longdescription>
4377 + </longdescription>
4378 <upstream>
4379 <remote-id type="sourceforge">zarja</remote-id>
4380 </upstream>
4381
4382 diff --git a/sci-mathematics/acl2/metadata.xml b/sci-mathematics/acl2/metadata.xml
4383 index 24fc428b4..efecc286f 100644
4384 --- a/sci-mathematics/acl2/metadata.xml
4385 +++ b/sci-mathematics/acl2/metadata.xml
4386 @@ -1,4 +1,4 @@
4387 -<?xml version="1.0" encoding="UTF-8"?>
4388 +<?xml version='1.0' encoding='UTF-8'?>
4389 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4390 <pkgmetadata>
4391 <maintainer type="person">
4392 @@ -15,11 +15,11 @@ ACL2 is both a programming language in which you can model computer systems and
4393 a tool to help you prove properties of those models. ACL2 is part of the
4394 Boyer-Moore family of provers, for which its authors have received the 2005 ACM
4395 Software System Award.
4396 - </longdescription>
4397 + </longdescription>
4398 <use>
4399 <flag name="books">
4400 build community books, the canonical collection of open-source libraries
4401 - </flag>
4402 + </flag>
4403 </use>
4404 <upstream>
4405 <remote-id type="github">acl2-devel/acl2-devel</remote-id>
4406
4407 diff --git a/sci-mathematics/burrtools/metadata.xml b/sci-mathematics/burrtools/metadata.xml
4408 index 584b02f43..12aa01e21 100644
4409 --- a/sci-mathematics/burrtools/metadata.xml
4410 +++ b/sci-mathematics/burrtools/metadata.xml
4411 @@ -1,4 +1,4 @@
4412 -<?xml version="1.0" encoding="UTF-8"?>
4413 +<?xml version='1.0' encoding='UTF-8'?>
4414 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4415 <pkgmetadata>
4416 <maintainer type="project">
4417 @@ -10,7 +10,7 @@
4418 Namely puzzles that are made out of square or dice shaped units, spheres or
4419 prisms with an equilateral triangle as base and where the pieces are also
4420 aligned along those grids in the solutions.
4421 -</longdescription>
4422 + </longdescription>
4423 <upstream>
4424 <remote-id type="sourceforge">burrtools</remote-id>
4425 </upstream>
4426
4427 diff --git a/sci-mathematics/cipi/metadata.xml b/sci-mathematics/cipi/metadata.xml
4428 index 5099b3389..1d7b2e537 100644
4429 --- a/sci-mathematics/cipi/metadata.xml
4430 +++ b/sci-mathematics/cipi/metadata.xml
4431 @@ -1,4 +1,4 @@
4432 -<?xml version="1.0" encoding="UTF-8"?>
4433 +<?xml version='1.0' encoding='UTF-8'?>
4434 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4435 <pkgmetadata>
4436 <maintainer type="person">
4437 @@ -12,7 +12,7 @@
4438 <longdescription lang="en">
4439 cipi is a threaded implementation of iterative proportional fitting. It is used to compute
4440 information projections iteratively.
4441 -</longdescription>
4442 + </longdescription>
4443 <upstream>
4444 <remote-id type="github">tom111/cipi</remote-id>
4445 </upstream>
4446
4447 diff --git a/sci-mathematics/dolfin/metadata.xml b/sci-mathematics/dolfin/metadata.xml
4448 index c45db3d3e..48b4594a3 100644
4449 --- a/sci-mathematics/dolfin/metadata.xml
4450 +++ b/sci-mathematics/dolfin/metadata.xml
4451 @@ -20,7 +20,7 @@ DOLFIN is the C++/Python interface of FEniCS, providing a consistent PSE (Proble
4452 <flag name="vtk">Adds support for the visualization toolkit <pkg>sci-libs/vtk</pkg></flag>
4453 </use>
4454 <upstream>
4455 - <remote-id type="launchpad">dolfin</remote-id>
4456 <remote-id type="bitbucket">fenics-project/dolfin</remote-id>
4457 + <remote-id type="launchpad">dolfin</remote-id>
4458 </upstream>
4459 </pkgmetadata>
4460
4461 diff --git a/sci-mathematics/gambit/metadata.xml b/sci-mathematics/gambit/metadata.xml
4462 index 40fbb61f4..14f19d7ee 100644
4463 --- a/sci-mathematics/gambit/metadata.xml
4464 +++ b/sci-mathematics/gambit/metadata.xml
4465 @@ -1,4 +1,4 @@
4466 -<?xml version="1.0" encoding="UTF-8"?>
4467 +<?xml version='1.0' encoding='UTF-8'?>
4468 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4469 <pkgmetadata>
4470 <maintainer type="person">
4471 @@ -11,8 +11,8 @@
4472 </maintainer>
4473 <use>
4474 <flag name="X">
4475 - Enable gui support using wxWidgets.
4476 - </flag>
4477 + Enable gui support using wxWidgets.
4478 + </flag>
4479 </use>
4480 <upstream>
4481 <remote-id type="sourceforge">gambit</remote-id>
4482
4483 diff --git a/sci-mathematics/kayali/metadata.xml b/sci-mathematics/kayali/metadata.xml
4484 index c6324364b..334e81c07 100644
4485 --- a/sci-mathematics/kayali/metadata.xml
4486 +++ b/sci-mathematics/kayali/metadata.xml
4487 @@ -1,4 +1,4 @@
4488 -<?xml version="1.0" encoding="UTF-8"?>
4489 +<?xml version='1.0' encoding='UTF-8'?>
4490 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4491 <pkgmetadata>
4492 <maintainer type="project">
4493 @@ -10,7 +10,7 @@ kayali is a Qt based Computer Algebra System (CAS) that can also be
4494 used as an advanced replacement for KDE KCalc. It is essentially a
4495 front end GUI forMaxima (and is easily extended to other CAS
4496 back-ends) and Gnuplot.
4497 -</longdescription>
4498 + </longdescription>
4499 <upstream>
4500 <remote-id type="sourceforge">kayali</remote-id>
4501 </upstream>
4502
4503 diff --git a/sci-mathematics/mdp/metadata.xml b/sci-mathematics/mdp/metadata.xml
4504 index 419ace4b8..bca69383e 100644
4505 --- a/sci-mathematics/mdp/metadata.xml
4506 +++ b/sci-mathematics/mdp/metadata.xml
4507 @@ -1,4 +1,4 @@
4508 -<?xml version="1.0" encoding="UTF-8"?>
4509 +<?xml version='1.0' encoding='UTF-8'?>
4510 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4511 <pkgmetadata>
4512 <maintainer type="person">
4513
4514 diff --git a/sci-mathematics/netgen/metadata.xml b/sci-mathematics/netgen/metadata.xml
4515 index 7811ed698..78d0a170b 100644
4516 --- a/sci-mathematics/netgen/metadata.xml
4517 +++ b/sci-mathematics/netgen/metadata.xml
4518 @@ -1,4 +1,4 @@
4519 -<?xml version="1.0" encoding="UTF-8"?>
4520 +<?xml version='1.0' encoding='UTF-8'?>
4521 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4522 <pkgmetadata>
4523 <maintainer type="project">
4524
4525 diff --git a/sci-mathematics/open-axiom/metadata.xml b/sci-mathematics/open-axiom/metadata.xml
4526 index 54d97e0a6..130efc546 100644
4527 --- a/sci-mathematics/open-axiom/metadata.xml
4528 +++ b/sci-mathematics/open-axiom/metadata.xml
4529 @@ -1,4 +1,4 @@
4530 -<?xml version="1.0" encoding="UTF-8"?>
4531 +<?xml version='1.0' encoding='UTF-8'?>
4532 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4533 <pkgmetadata>
4534 <maintainer type="project">
4535 @@ -10,7 +10,7 @@
4536 numerical computations. It offers an interactive environment, an expressive
4537 programming language, a compiler, a large set of mathematical libraries of
4538 interest to researchers and practitioners of computational sciences.
4539 -</longdescription>
4540 + </longdescription>
4541 <upstream>
4542 <remote-id type="sourceforge">open-axiom</remote-id>
4543 </upstream>
4544
4545 diff --git a/sci-mathematics/pulp/metadata.xml b/sci-mathematics/pulp/metadata.xml
4546 index c2c5bcc78..83aff6f44 100644
4547 --- a/sci-mathematics/pulp/metadata.xml
4548 +++ b/sci-mathematics/pulp/metadata.xml
4549 @@ -1,4 +1,4 @@
4550 -<?xml version="1.0" encoding="UTF-8"?>
4551 +<?xml version='1.0' encoding='UTF-8'?>
4552 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4553 <pkgmetadata>
4554 <maintainer type="project">
4555
4556 diff --git a/sci-mathematics/ufc/metadata.xml b/sci-mathematics/ufc/metadata.xml
4557 index c26ddd0fe..b3a913d46 100644
4558 --- a/sci-mathematics/ufc/metadata.xml
4559 +++ b/sci-mathematics/ufc/metadata.xml
4560 @@ -1,4 +1,4 @@
4561 -<?xml version="1.0" encoding="UTF-8"?>
4562 +<?xml version='1.0' encoding='UTF-8'?>
4563 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4564 <pkgmetadata>
4565 <maintainer type="project">
4566
4567 diff --git a/sci-mathematics/yorick/metadata.xml b/sci-mathematics/yorick/metadata.xml
4568 index 47fd43db6..8c87d53b3 100644
4569 --- a/sci-mathematics/yorick/metadata.xml
4570 +++ b/sci-mathematics/yorick/metadata.xml
4571 @@ -1,4 +1,4 @@
4572 -<?xml version="1.0" encoding="UTF-8"?>
4573 +<?xml version='1.0' encoding='UTF-8'?>
4574 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4575 <pkgmetadata>
4576 <maintainer type="person">
4577 @@ -13,7 +13,7 @@
4578 Yorick is a language for scientific computing and rapid prototyping, similar to
4579 matlab. It can easily call C functions and libraries, has multidimensional arrays
4580 and built-in plot functions.
4581 -</longdescription>
4582 + </longdescription>
4583 <upstream>
4584 <remote-id type="sourceforge">yorick</remote-id>
4585 </upstream>
4586
4587 diff --git a/sci-misc/elmer-elmergrid/metadata.xml b/sci-misc/elmer-elmergrid/metadata.xml
4588 index 74cf8e43e..cab7f518f 100644
4589 --- a/sci-misc/elmer-elmergrid/metadata.xml
4590 +++ b/sci-misc/elmer-elmergrid/metadata.xml
4591 @@ -1,4 +1,4 @@
4592 -<?xml version="1.0" encoding="UTF-8"?>
4593 +<?xml version='1.0' encoding='UTF-8'?>
4594 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4595 <pkgmetadata>
4596 <maintainer type="project">
4597 @@ -6,6 +6,6 @@
4598 <name>Gentoo Science Project</name>
4599 </maintainer>
4600 <upstream>
4601 - <remote-id type="sourceforge">elmerfem.svn</remote-id>
4602 + <remote-id type="sourceforge">svn</remote-id>
4603 </upstream>
4604 </pkgmetadata>
4605
4606 diff --git a/sci-misc/elmer-fem/metadata.xml b/sci-misc/elmer-fem/metadata.xml
4607 index 74cf8e43e..cab7f518f 100644
4608 --- a/sci-misc/elmer-fem/metadata.xml
4609 +++ b/sci-misc/elmer-fem/metadata.xml
4610 @@ -1,4 +1,4 @@
4611 -<?xml version="1.0" encoding="UTF-8"?>
4612 +<?xml version='1.0' encoding='UTF-8'?>
4613 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4614 <pkgmetadata>
4615 <maintainer type="project">
4616 @@ -6,6 +6,6 @@
4617 <name>Gentoo Science Project</name>
4618 </maintainer>
4619 <upstream>
4620 - <remote-id type="sourceforge">elmerfem.svn</remote-id>
4621 + <remote-id type="sourceforge">svn</remote-id>
4622 </upstream>
4623 </pkgmetadata>
4624
4625 diff --git a/sci-misc/elmer-front/metadata.xml b/sci-misc/elmer-front/metadata.xml
4626 index 74cf8e43e..cab7f518f 100644
4627 --- a/sci-misc/elmer-front/metadata.xml
4628 +++ b/sci-misc/elmer-front/metadata.xml
4629 @@ -1,4 +1,4 @@
4630 -<?xml version="1.0" encoding="UTF-8"?>
4631 +<?xml version='1.0' encoding='UTF-8'?>
4632 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4633 <pkgmetadata>
4634 <maintainer type="project">
4635 @@ -6,6 +6,6 @@
4636 <name>Gentoo Science Project</name>
4637 </maintainer>
4638 <upstream>
4639 - <remote-id type="sourceforge">elmerfem.svn</remote-id>
4640 + <remote-id type="sourceforge">svn</remote-id>
4641 </upstream>
4642 </pkgmetadata>
4643
4644 diff --git a/sci-misc/elmer-meshgen2d/metadata.xml b/sci-misc/elmer-meshgen2d/metadata.xml
4645 index 74cf8e43e..cab7f518f 100644
4646 --- a/sci-misc/elmer-meshgen2d/metadata.xml
4647 +++ b/sci-misc/elmer-meshgen2d/metadata.xml
4648 @@ -1,4 +1,4 @@
4649 -<?xml version="1.0" encoding="UTF-8"?>
4650 +<?xml version='1.0' encoding='UTF-8'?>
4651 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4652 <pkgmetadata>
4653 <maintainer type="project">
4654 @@ -6,6 +6,6 @@
4655 <name>Gentoo Science Project</name>
4656 </maintainer>
4657 <upstream>
4658 - <remote-id type="sourceforge">elmerfem.svn</remote-id>
4659 + <remote-id type="sourceforge">svn</remote-id>
4660 </upstream>
4661 </pkgmetadata>
4662
4663 diff --git a/sci-misc/elmer-post/metadata.xml b/sci-misc/elmer-post/metadata.xml
4664 index 74cf8e43e..cab7f518f 100644
4665 --- a/sci-misc/elmer-post/metadata.xml
4666 +++ b/sci-misc/elmer-post/metadata.xml
4667 @@ -1,4 +1,4 @@
4668 -<?xml version="1.0" encoding="UTF-8"?>
4669 +<?xml version='1.0' encoding='UTF-8'?>
4670 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4671 <pkgmetadata>
4672 <maintainer type="project">
4673 @@ -6,6 +6,6 @@
4674 <name>Gentoo Science Project</name>
4675 </maintainer>
4676 <upstream>
4677 - <remote-id type="sourceforge">elmerfem.svn</remote-id>
4678 + <remote-id type="sourceforge">svn</remote-id>
4679 </upstream>
4680 </pkgmetadata>
4681
4682 diff --git a/sci-misc/hfst/metadata.xml b/sci-misc/hfst/metadata.xml
4683 index 4be3eac8d..ea7f0f8ea 100644
4684 --- a/sci-misc/hfst/metadata.xml
4685 +++ b/sci-misc/hfst/metadata.xml
4686 @@ -1,4 +1,4 @@
4687 -<?xml version="1.0" encoding="UTF-8"?>
4688 +<?xml version='1.0' encoding='UTF-8'?>
4689 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4690 <pkgmetadata>
4691 <longdescription lang="en">
4692
4693 diff --git a/sci-misc/irstlm/metadata.xml b/sci-misc/irstlm/metadata.xml
4694 index cca53d192..39f066e5f 100644
4695 --- a/sci-misc/irstlm/metadata.xml
4696 +++ b/sci-misc/irstlm/metadata.xml
4697 @@ -1,4 +1,4 @@
4698 -<?xml version="1.0" encoding="UTF-8"?>
4699 +<?xml version='1.0' encoding='UTF-8'?>
4700 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4701 <pkgmetadata>
4702 <maintainer type="person">
4703 @@ -10,7 +10,7 @@
4704 The software has been integrated into a popular open source Statistical Machine
4705 Translation decoder called Moses, and is compatible with language models created
4706 with other tools, such as the SRILM Tooolkit.
4707 - </longdescription>
4708 + </longdescription>
4709 <upstream>
4710 <remote-id type="github">irstlm-team/irstlm</remote-id>
4711 </upstream>
4712
4713 diff --git a/sci-misc/jwnl/metadata.xml b/sci-misc/jwnl/metadata.xml
4714 index a1741675c..252d8fec2 100644
4715 --- a/sci-misc/jwnl/metadata.xml
4716 +++ b/sci-misc/jwnl/metadata.xml
4717 @@ -1,4 +1,4 @@
4718 -<?xml version="1.0" encoding="UTF-8"?>
4719 +<?xml version='1.0' encoding='UTF-8'?>
4720 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4721 <pkgmetadata>
4722 <maintainer type="person">
4723 @@ -7,7 +7,7 @@
4724 <longdescription>
4725 Java based programming interface for accessing wordnet style dictionary
4726 data.
4727 -</longdescription>
4728 + </longdescription>
4729 <upstream>
4730 <remote-id type="sourceforge">jwordnet</remote-id>
4731 </upstream>
4732
4733 diff --git a/sci-misc/kaldi/metadata.xml b/sci-misc/kaldi/metadata.xml
4734 index e441381a1..277ec0c79 100644
4735 --- a/sci-misc/kaldi/metadata.xml
4736 +++ b/sci-misc/kaldi/metadata.xml
4737 @@ -1,4 +1,4 @@
4738 -<?xml version="1.0" encoding="UTF-8"?>
4739 +<?xml version='1.0' encoding='UTF-8'?>
4740 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4741 <pkgmetadata>
4742 <maintainer type="person">
4743
4744 diff --git a/sci-misc/nltk/metadata.xml b/sci-misc/nltk/metadata.xml
4745 index ef430211f..d1266bc46 100644
4746 --- a/sci-misc/nltk/metadata.xml
4747 +++ b/sci-misc/nltk/metadata.xml
4748 @@ -1,4 +1,4 @@
4749 -<?xml version="1.0" encoding="UTF-8"?>
4750 +<?xml version='1.0' encoding='UTF-8'?>
4751 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4752 <pkgmetadata>
4753 <maintainer type="person">
4754 @@ -7,7 +7,7 @@
4755 <longdescription>
4756 NLTK is collection of natural language tools written in python language. It
4757 also contains huge corpora.
4758 -</longdescription>
4759 + </longdescription>
4760 <upstream>
4761 <remote-id type="github">nltk/nltk</remote-id>
4762 </upstream>
4763
4764 diff --git a/sci-misc/opennlp-maxent/metadata.xml b/sci-misc/opennlp-maxent/metadata.xml
4765 index 63d00026d..f27469ae0 100644
4766 --- a/sci-misc/opennlp-maxent/metadata.xml
4767 +++ b/sci-misc/opennlp-maxent/metadata.xml
4768 @@ -1,4 +1,4 @@
4769 -<?xml version="1.0" encoding="UTF-8"?>
4770 +<?xml version='1.0' encoding='UTF-8'?>
4771 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4772 <pkgmetadata>
4773 <maintainer type="person">
4774 @@ -7,7 +7,7 @@
4775 <longdescription>
4776 Implementation of statistical classification using
4777 maximum entropy models in opennlp framework.
4778 -</longdescription>
4779 + </longdescription>
4780 <upstream>
4781 <remote-id type="sourceforge">maxent</remote-id>
4782 </upstream>
4783
4784 diff --git a/sci-misc/praat/metadata.xml b/sci-misc/praat/metadata.xml
4785 index 1778e5ff2..c65ab9204 100644
4786 --- a/sci-misc/praat/metadata.xml
4787 +++ b/sci-misc/praat/metadata.xml
4788 @@ -1,4 +1,4 @@
4789 -<?xml version="1.0" encoding="UTF-8"?>
4790 +<?xml version='1.0' encoding='UTF-8'?>
4791 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4792 <pkgmetadata>
4793 <maintainer type="person">
4794
4795 diff --git a/sci-misc/pywordnet/metadata.xml b/sci-misc/pywordnet/metadata.xml
4796 index 0c1d298cd..a9ae1397f 100644
4797 --- a/sci-misc/pywordnet/metadata.xml
4798 +++ b/sci-misc/pywordnet/metadata.xml
4799 @@ -1,4 +1,4 @@
4800 -<?xml version="1.0" encoding="UTF-8"?>
4801 +<?xml version='1.0' encoding='UTF-8'?>
4802 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4803 <pkgmetadata>
4804 <maintainer type="person">
4805 @@ -6,7 +6,7 @@
4806 </maintainer>
4807 <longdescription>
4808 Pywordnet contains python bindings to handle wordnet databases.
4809 -</longdescription>
4810 + </longdescription>
4811 <upstream>
4812 <remote-id type="sourceforge">pywordnet</remote-id>
4813 </upstream>
4814
4815 diff --git a/sci-misc/simx/metadata.xml b/sci-misc/simx/metadata.xml
4816 index 2ceb14aaf..321ce9b3c 100644
4817 --- a/sci-misc/simx/metadata.xml
4818 +++ b/sci-misc/simx/metadata.xml
4819 @@ -1,4 +1,4 @@
4820 -<?xml version="1.0" encoding="UTF-8"?>
4821 +<?xml version='1.0' encoding='UTF-8'?>
4822 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4823 <pkgmetadata>
4824 <maintainer type="project">
4825
4826 diff --git a/sci-physics/bigdft/metadata.xml b/sci-physics/bigdft/metadata.xml
4827 index f3648be71..17af4cae8 100644
4828 --- a/sci-physics/bigdft/metadata.xml
4829 +++ b/sci-physics/bigdft/metadata.xml
4830 @@ -1,4 +1,4 @@
4831 -<?xml version="1.0" encoding="UTF-8"?>
4832 +<?xml version='1.0' encoding='UTF-8'?>
4833 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4834 <pkgmetadata>
4835 <maintainer type="project">
4836 @@ -6,8 +6,8 @@
4837 <name>Gentoo Physics Project</name>
4838 </maintainer>
4839 <longdescription lang="en">
4840 -BigDFT is a DFT massively parallel electronic structure code (GPL license) using a wavelet basis set. Wavelets form a real space basis set distributed on an adaptive mesh (two levels of resolution in our implementation). GTH or HGH pseudopotentials are used to remove the core electrons. Thanks to our Poisson solver based on a Green function formalism, periodic systems, surfaces and isolated systems can be simulated with the proper boundary conditions.
4841 -</longdescription>
4842 +BigDFT is a DFT massively parallel electronic structure code (GPL license) using a wavelet basis set. Wavelets form a real space basis set distributed on an adaptive mesh (two levels of resolution in our implementation). GTH or HGH pseudopotentials are used to remove the core electrons. Thanks to our Poisson solver based on a Green function formalism, periodic systems, surfaces and isolated systems can be simulated with the proper boundary conditions.
4843 + </longdescription>
4844 <use>
4845 <flag name="cuda">Enable support for nVidia CUDA GPU acceleration</flag>
4846 <flag name="etsf_io">
4847
4848 diff --git a/sci-physics/clip/metadata.xml b/sci-physics/clip/metadata.xml
4849 index fab4f8637..7118946d7 100644
4850 --- a/sci-physics/clip/metadata.xml
4851 +++ b/sci-physics/clip/metadata.xml
4852 @@ -1,4 +1,4 @@
4853 -<?xml version="1.0" encoding="UTF-8"?>
4854 +<?xml version='1.0' encoding='UTF-8'?>
4855 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4856 <pkgmetadata>
4857 <longdescription>
4858
4859 diff --git a/sci-physics/elk/metadata.xml b/sci-physics/elk/metadata.xml
4860 index 7246d7075..66d2fc12b 100644
4861 --- a/sci-physics/elk/metadata.xml
4862 +++ b/sci-physics/elk/metadata.xml
4863 @@ -1,4 +1,4 @@
4864 -<?xml version="1.0" encoding="UTF-8"?>
4865 +<?xml version='1.0' encoding='UTF-8'?>
4866 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4867 <pkgmetadata>
4868 <maintainer type="project">
4869 @@ -7,17 +7,17 @@
4870 </maintainer>
4871 <longdescription lang="en">
4872 Elk is an all-electron full-potential linearised augmented-plane wave (FP-LAPW) code with many advanced features. Written originally at Karl-Franzens-Universität Graz as a milestone of the EXCITING EU Research and Training Network, the code is designed to be as simple as possible so that new developments in the field of density functional theory (DFT) can be added quickly and reliably. The code is freely available under the GNU General Public License.
4873 -</longdescription>
4874 + </longdescription>
4875 <use>
4876 <flag name="libxc">
4877 Use sci-libs/libxc library of exchange-correlation functionals by ETSF.
4878 - </flag>
4879 + </flag>
4880 <flag name="perl">
4881 Install perl scripts.
4882 - </flag>
4883 + </flag>
4884 <flag name="python">
4885 Install python scripts.
4886 - </flag>
4887 + </flag>
4888 </use>
4889 <upstream>
4890 <remote-id type="sourceforge">elk</remote-id>
4891
4892 diff --git a/sci-physics/genfit/metadata.xml b/sci-physics/genfit/metadata.xml
4893 index a9ebbe023..c302922f7 100644
4894 --- a/sci-physics/genfit/metadata.xml
4895 +++ b/sci-physics/genfit/metadata.xml
4896 @@ -1,4 +1,4 @@
4897 -<?xml version="1.0" encoding="UTF-8"?>
4898 +<?xml version='1.0' encoding='UTF-8'?>
4899 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4900 <pkgmetadata>
4901 <maintainer type="project">
4902
4903 diff --git a/sci-physics/quinoa/metadata.xml b/sci-physics/quinoa/metadata.xml
4904 index 7d658f994..c5bbbd579 100644
4905 --- a/sci-physics/quinoa/metadata.xml
4906 +++ b/sci-physics/quinoa/metadata.xml
4907 @@ -1,4 +1,4 @@
4908 -<?xml version="1.0" encoding="UTF-8"?>
4909 +<?xml version='1.0' encoding='UTF-8'?>
4910 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4911 <pkgmetadata>
4912 <maintainer type="person">
4913 @@ -9,7 +9,4 @@
4914 <email>sci-physics@g.o</email>
4915 <name>Gentoo Physics Project</name>
4916 </maintainer>
4917 - <upstream>
4918 - <remote-id type="github">quinoacomputing/quinoa</remote-id>
4919 - </upstream>
4920 </pkgmetadata>
4921
4922 diff --git a/sci-visualization/forge/metadata.xml b/sci-visualization/forge/metadata.xml
4923 index 48c30ca5c..010970cee 100644
4924 --- a/sci-visualization/forge/metadata.xml
4925 +++ b/sci-visualization/forge/metadata.xml
4926 @@ -1,4 +1,4 @@
4927 -<?xml version="1.0" encoding="UTF-8"?>
4928 +<?xml version='1.0' encoding='UTF-8'?>
4929 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4930 <pkgmetadata>
4931 <maintainer type="person">
4932
4933 diff --git a/sci-visualization/mantid/metadata.xml b/sci-visualization/mantid/metadata.xml
4934 index 7335b8a88..b3d3b4618 100644
4935 --- a/sci-visualization/mantid/metadata.xml
4936 +++ b/sci-visualization/mantid/metadata.xml
4937 @@ -1,4 +1,4 @@
4938 -<?xml version="1.0" encoding="UTF-8"?>
4939 +<?xml version='1.0' encoding='UTF-8'?>
4940 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4941 <pkgmetadata>
4942 <maintainer type="person">
4943 @@ -15,7 +15,7 @@
4944
4945 Mantid has been created to manipulate and analyse neutron scattering and muon
4946 spectroscopy data, but could be applied to many other techniques.
4947 -</longdescription>
4948 + </longdescription>
4949 <use>
4950 <flag name="doc">Generate documentation with <pkg>app-doc/doxygen</pkg>, QT Assistant etc</flag>
4951 <flag name="opencascade">Use OpenCascade to show 3D models of instruments</flag>
4952
4953 diff --git a/sci-visualization/mayavi/metadata.xml b/sci-visualization/mayavi/metadata.xml
4954 index 0bde729fe..295da5bc4 100644
4955 --- a/sci-visualization/mayavi/metadata.xml
4956 +++ b/sci-visualization/mayavi/metadata.xml
4957 @@ -1,4 +1,4 @@
4958 -<?xml version="1.0" encoding="UTF-8"?>
4959 +<?xml version='1.0' encoding='UTF-8'?>
4960 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4961 <pkgmetadata>
4962 <maintainer type="project">
4963 @@ -23,7 +23,7 @@
4964 interactive visualizations in any other application. It may also be
4965 used as an Envisage plug-in which allows it to be embedded in other
4966 Envisage based applications natively.
4967 -</longdescription>
4968 + </longdescription>
4969 <upstream>
4970 <remote-id type="github">enthought/mayavi</remote-id>
4971 </upstream>
4972
4973 diff --git a/sci-visualization/mricrogl/metadata.xml b/sci-visualization/mricrogl/metadata.xml
4974 index a70a4f691..62f47f127 100644
4975 --- a/sci-visualization/mricrogl/metadata.xml
4976 +++ b/sci-visualization/mricrogl/metadata.xml
4977 @@ -1,4 +1,4 @@
4978 -<?xml version="1.0" encoding="UTF-8"?>
4979 +<?xml version='1.0' encoding='UTF-8'?>
4980 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4981 <pkgmetadata>
4982 <maintainer type="project">
4983
4984 diff --git a/sci-visualization/mricron/metadata.xml b/sci-visualization/mricron/metadata.xml
4985 index 3e689deb2..f2ec963bd 100644
4986 --- a/sci-visualization/mricron/metadata.xml
4987 +++ b/sci-visualization/mricron/metadata.xml
4988 @@ -1,4 +1,4 @@
4989 -<?xml version="1.0" encoding="UTF-8"?>
4990 +<?xml version='1.0' encoding='UTF-8'?>
4991 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
4992 <pkgmetadata>
4993 <maintainer type="project">
4994
4995 diff --git a/sci-visualization/nodemon/metadata.xml b/sci-visualization/nodemon/metadata.xml
4996 index 6c2651609..46b38f8e9 100644
4997 --- a/sci-visualization/nodemon/metadata.xml
4998 +++ b/sci-visualization/nodemon/metadata.xml
4999 @@ -1,4 +1,4 @@
5000 -<?xml version="1.0" encoding="UTF-8"?>
5001 +<?xml version='1.0' encoding='UTF-8'?>
5002 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
5003 <pkgmetadata>
5004 <maintainer type="person">
5005 @@ -18,6 +18,6 @@ systems.
5006 <flag name="pbs">Enable support for the Portable Batch System.</flag>
5007 </use>
5008 <upstream>
5009 - <remote-id type="sourceforge">nodemon</remote-id>
5010 + <remote-id type="sourceforge">downloads</remote-id>
5011 </upstream>
5012 </pkgmetadata>
5013
5014 diff --git a/sci-visualization/surf-ice/metadata.xml b/sci-visualization/surf-ice/metadata.xml
5015 index 434c6e79a..c30540d2e 100644
5016 --- a/sci-visualization/surf-ice/metadata.xml
5017 +++ b/sci-visualization/surf-ice/metadata.xml
5018 @@ -1,4 +1,4 @@
5019 -<?xml version="1.0" encoding="UTF-8"?>
5020 +<?xml version='1.0' encoding='UTF-8'?>
5021 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
5022 <pkgmetadata>
5023 <maintainer type="project">
5024
5025 diff --git a/sci-visualization/yt/metadata.xml b/sci-visualization/yt/metadata.xml
5026 index bf8fc161b..8d0c498af 100644
5027 --- a/sci-visualization/yt/metadata.xml
5028 +++ b/sci-visualization/yt/metadata.xml
5029 @@ -1,4 +1,4 @@
5030 -<?xml version="1.0" encoding="UTF-8"?>
5031 +<?xml version='1.0' encoding='UTF-8'?>
5032 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
5033 <pkgmetadata>
5034 <maintainer type="person">
5035
5036 diff --git a/sys-cluster/htcondor/metadata.xml b/sys-cluster/htcondor/metadata.xml
5037 index fd01a5ef5..6b59f13ef 100644
5038 --- a/sys-cluster/htcondor/metadata.xml
5039 +++ b/sys-cluster/htcondor/metadata.xml
5040 @@ -1,4 +1,4 @@
5041 -<?xml version="1.0" encoding="UTF-8"?>
5042 +<?xml version='1.0' encoding='UTF-8'?>
5043 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
5044 <pkgmetadata>
5045 <maintainer type="person">
5046 @@ -18,7 +18,7 @@
5047 their progress, and ultimately informs the user upon completion. HTCondor
5048 also contains mechanisms to submit jobs to grid-sites and supports many
5049 different grid toolkits.
5050 -</longdescription>
5051 + </longdescription>
5052 <use>
5053 <flag name="boinc">Enable backfill with BOINC jobs when the cluster is not being used</flag>
5054 <flag name="cgroup">Use <pkg>dev-libs/libcgroup</pkg> for kernel control groups</flag>
5055
5056 diff --git a/sys-cluster/modules/metadata.xml b/sys-cluster/modules/metadata.xml
5057 index 93949be3e..c3afebb3f 100644
5058 --- a/sys-cluster/modules/metadata.xml
5059 +++ b/sys-cluster/modules/metadata.xml
5060 @@ -1,4 +1,4 @@
5061 -<?xml version="1.0" encoding="UTF-8"?>
5062 +<?xml version='1.0' encoding='UTF-8'?>
5063 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
5064 <pkgmetadata>
5065 <maintainer type="person">
5066
5067 diff --git a/sys-cluster/pyslice/metadata.xml b/sys-cluster/pyslice/metadata.xml
5068 index 380503dc8..ac3fb7b1e 100644
5069 --- a/sys-cluster/pyslice/metadata.xml
5070 +++ b/sys-cluster/pyslice/metadata.xml
5071 @@ -1,4 +1,4 @@
5072 -<?xml version="1.0" encoding="UTF-8"?>
5073 +<?xml version='1.0' encoding='UTF-8'?>
5074 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
5075 <pkgmetadata>
5076 <maintainer type="project">
5077
5078 diff --git a/www-client/casperjs/metadata.xml b/www-client/casperjs/metadata.xml
5079 index 3a70916ad..0227d5b56 100644
5080 --- a/www-client/casperjs/metadata.xml
5081 +++ b/www-client/casperjs/metadata.xml
5082 @@ -1,4 +1,4 @@
5083 -<?xml version="1.0" encoding="UTF-8"?>
5084 +<?xml version='1.0' encoding='UTF-8'?>
5085 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
5086 <pkgmetadata>
5087 <maintainer type="project">
5088
5089 diff --git a/x11-misc/envytools/metadata.xml b/x11-misc/envytools/metadata.xml
5090 index 856791447..a0fe55dd7 100644
5091 --- a/x11-misc/envytools/metadata.xml
5092 +++ b/x11-misc/envytools/metadata.xml
5093 @@ -1,4 +1,4 @@
5094 -<?xml version="1.0" encoding="UTF-8"?>
5095 +<?xml version='1.0' encoding='UTF-8'?>
5096 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
5097 <pkgmetadata>
5098 <maintainer type="person">