[gentoo-commits] gentoo-x86 commit in sci-chemistry/pymol-plugins-msms: metadata.xml ChangeLog pymol-plugins-msms-100415-r1.ebuild

[Justin Lecher (jlec)]

jlec        13/12/02 11:10:59

  Modified:             metadata.xml ChangeLog
  Added:                pymol-plugins-msms-100415-r1.ebuild
  Log:
  sci-chemistry/pymol-plugins-msms: Bump to python-r1.eclass
  
  (Portage version: 2.2.7/cvs/Linux x86_64, signed Manifest commit with key B9D4F231BD1558AB!)

Revision  Changes    Path
1.2                  sci-chemistry/pymol-plugins-msms/metadata.xml

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pymol-plugins-msms/metadata.xml?rev=1.2&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pymol-plugins-msms/metadata.xml?rev=1.2&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pymol-plugins-msms/metadata.xml?r1=1.1&r2=1.2

Index: metadata.xml
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/pymol-plugins-msms/metadata.xml,v
retrieving revision 1.1
retrieving revision 1.2
diff -u -r1.1 -r1.2
--- metadata.xml	22 Mar 2011 08:33:08 -0000	1.1
+++ metadata.xml	2 Dec 2013 11:10:59 -0000	1.2
@@ -1,11 +1,11 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
 <pkgmetadata>
-<herd>sci-chemistry</herd>
-<maintainer>
-  <email>jlec@g.o</email>
-</maintainer>
-<longdescription>
+  <herd>sci-chemistry</herd>
+  <maintainer>
+    <email>jlec@g.o</email>
+  </maintainer>
+  <longdescription>
 MSMS is an excellent tool for computing protein solvent excluded surface (SES).
 MSMS Plugin for PyMOL provides a graphical user interface for running MSMS and 
 displaying its results in PyMOL. 



1.3                  sci-chemistry/pymol-plugins-msms/ChangeLog

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pymol-plugins-msms/ChangeLog?rev=1.3&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pymol-plugins-msms/ChangeLog?rev=1.3&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pymol-plugins-msms/ChangeLog?r1=1.2&r2=1.3

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/pymol-plugins-msms/ChangeLog,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- ChangeLog	22 Mar 2011 21:09:25 -0000	1.2
+++ ChangeLog	2 Dec 2013 11:10:59 -0000	1.3
@@ -1,6 +1,12 @@
 # ChangeLog for sci-chemistry/pymol-plugins-msms
-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol-plugins-msms/ChangeLog,v 1.2 2011/03/22 21:09:25 jlec Exp $
+# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol-plugins-msms/ChangeLog,v 1.3 2013/12/02 11:10:59 jlec Exp $
+
+*pymol-plugins-msms-100415-r1 (02 Dec 2013)
+
+  02 Dec 2013; Justin Lecher <jlec@g.o>
+  +pymol-plugins-msms-100415-r1.ebuild, metadata.xml:
+  Bump to python-r1.eclass
 
   22 Mar 2011; Justin Lecher <jlec@g.o>
   pymol-plugins-msms-100415.ebuild:



1.1                  sci-chemistry/pymol-plugins-msms/pymol-plugins-msms-100415-r1.ebuild

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pymol-plugins-msms/pymol-plugins-msms-100415-r1.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pymol-plugins-msms/pymol-plugins-msms-100415-r1.ebuild?rev=1.1&content-type=text/plain

Index: pymol-plugins-msms-100415-r1.ebuild
===================================================================
# Copyright 1999-2013 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol-plugins-msms/pymol-plugins-msms-100415-r1.ebuild,v 1.1 2013/12/02 11:10:59 jlec Exp $

EAPI=5

PYTHON_COMPAT=( python2_7 )

inherit eutils python-r1

DESCRIPTION="GUI for MSMS and displaying its results in PyMOL"
HOMEPAGE="http://www.biotec.tu-dresden.de/~hongboz/msms_pymol/msms_pymol.html"
SRC_URI="http://www.biotec.tu-dresden.de/~hongboz/msms_pymol/pymol_script/msms_pymol.py -> ${P}.py"

SLOT="0"
KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
LICENSE="BSD pymol"
IUSE=""

RDEPEND="
	sci-chemistry/msms-bin
	sci-chemistry/pymol[${PYTHON_USEDEP}]"
DEPEND="${RDEPEND}"

src_unpack() {
	mkdir "${S}" || die
	cp "${DISTDIR}"/${A} "${S}/" || die
}

src_prepare() {
	epatch "${FILESDIR}"/${PV}-msms.patch
	sed \
		-e "s:GENTOOMSMS:${EPREFIX}/opt/bin/msms:g" \
		-e "s:GENTOOXYZRN:${EPREFIX}/usr/bin/pdb_to_xyzrn:g" \
		-i ${A} || die
}

src_install() {
	python_moduleinto pmg_tk/startup
	python_parallel_foreach_impl python_domodule ${P}.py
	python_parallel_foreach_impl python_optimize
}