[gentoo-commits] proj/sci:master commit in: sci-biology/scythe/

[Martin Mokrejs]

commit:     0272e6869c544d92b7d4f585ba1987fa6db1e8b3
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Mon Mar 24 00:39:36 2014 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Mon Mar 24 00:39:36 2014 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=0272e686

sci-biology/scythe: new package, bundled Makefile forces -O3, wrong version number, but works

---
 sci-biology/scythe/ChangeLog           | 10 ++++++++++
 sci-biology/scythe/metadata.xml        |  9 +++++++++
 sci-biology/scythe/scythe-0.992.ebuild | 26 ++++++++++++++++++++++++++
 3 files changed, 45 insertions(+)

diff --git a/sci-biology/scythe/ChangeLog b/sci-biology/scythe/ChangeLog
new file mode 100644
index 0000000..679d1b1
--- /dev/null
+++ b/sci-biology/scythe/ChangeLog
@@ -0,0 +1,10 @@
+# ChangeLog for sci-biology/scythe
+# Copyright 1999-2014 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*scythe-0.992 (24 Mar 2014)
+
+  24 Mar 2014; Martin Mokrejs <mmokrejs@×××××××××××××××.cz>
+  +scythe-0.992.ebuild, +metadata.xml:
+  bundled Makefile forces -O3, wrong version number, but works
+

diff --git a/sci-biology/scythe/metadata.xml b/sci-biology/scythe/metadata.xml
new file mode 100644
index 0000000..2bc8930
--- /dev/null
+++ b/sci-biology/scythe/metadata.xml
@@ -0,0 +1,9 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
+<pkgmetadata>
+  <herd>sci-biology</herd>
+  <maintainer>
+    <email>mmokrejs@×××××××××××××××.cz</email>
+    <name>Martin Mokrejs</name>
+  </maintainer>
+</pkgmetadata>

diff --git a/sci-biology/scythe/scythe-0.992.ebuild b/sci-biology/scythe/scythe-0.992.ebuild
new file mode 100644
index 0000000..608ac3f
--- /dev/null
+++ b/sci-biology/scythe/scythe-0.992.ebuild
@@ -0,0 +1,26 @@
+# Copyright 1999-2014 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=5
+
+inherit eutils git-r3
+
+DESCRIPTION="Bayesian adapter trimmer for Illumina/Solexa"
+HOMEPAGE="https://github.com/vsbuffalo/scythe"
+EGIT_REPO_URI="https://github.com/vsbuffalo/scythe"
+
+LICENSE="MIT"
+SLOT="0"
+KEYWORDS="~amd64"
+IUSE=""
+
+DEPEND=""
+RDEPEND="${DEPEND}
+	sys-libs/zlib"
+
+src_install(){
+	dobin scythe
+	dodoc README.md
+	dodoc illumina_adapters.fa
+}