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| From: | "Andrey Kislyuk (weaver)" <weaver@g.o> |
|---|---|
| To: | gentoo-commits@l.g.o |
| Subject: | [gentoo-commits] gentoo-x86 commit in sci-biology/diya: diya-1.0_rc4.ebuild metadata.xml ChangeLog |
| Date: | Mon, 28 Sep 2009 00:16:08 |
| Message-Id: | E1Ms3uN-0003fL-DN@stork.gentoo.org |
| 1 | weaver 09/09/28 00:16:03 |
| 2 | |
| 3 | Added: diya-1.0_rc4.ebuild metadata.xml ChangeLog |
| 4 | Log: |
| 5 | New package, ebuild written by me |
| 6 | (Portage version: 2.2_rc30/cvs/Linux x86_64) |
| 7 | |
| 8 | Revision Changes Path |
| 9 | 1.1 sci-biology/diya/diya-1.0_rc4.ebuild |
| 10 | |
| 11 | file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/diya/diya-1.0_rc4.ebuild?rev=1.1&view=markup |
| 12 | plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/diya/diya-1.0_rc4.ebuild?rev=1.1&content-type=text/plain |
| 13 | |
| 14 | Index: diya-1.0_rc4.ebuild |
| 15 | =================================================================== |
| 16 | # Copyright 1999-2009 Gentoo Foundation |
| 17 | # Distributed under the terms of the GNU General Public License v2 |
| 18 | # $Header: /var/cvsroot/gentoo-x86/sci-biology/diya/diya-1.0_rc4.ebuild,v 1.1 2009/09/28 00:16:02 weaver Exp $ |
| 19 | |
| 20 | EAPI="2" |
| 21 | |
| 22 | inherit perl-module |
| 23 | |
| 24 | DESCRIPTION="Do It Yourself Annotation, a collection of tools and libraries for sequence assembly and annotation" |
| 25 | HOMEPAGE="http://gmod.org/wiki/Diya" |
| 26 | SRC_URI="mirror://sourceforge/diyg/files/diya/diya-1.0/diya-${PV/_/-}.tar.gz" |
| 27 | |
| 28 | LICENSE="GPL-3" |
| 29 | SLOT="0" |
| 30 | IUSE="-minimal" |
| 31 | KEYWORDS="~amd64 ~x86" |
| 32 | |
| 33 | DEPEND="sci-biology/bioperl |
| 34 | dev-perl/Data-Utilities |
| 35 | dev-perl/XML-Simple" |
| 36 | RDEPEND="${DEPEND} |
| 37 | !minimal? ( |
| 38 | sci-biology/mummer |
| 39 | sci-biology/glimmer |
| 40 | sci-biology/trnascan-se |
| 41 | sci-biology/infernal )" |
| 42 | |
| 43 | # see ftp://ftp.ncbi.nih.gov/blast/ to check if blast and blast+ are different from ncbi-tools and ncbi-tools++ |
| 44 | # * rfamscan.pl v0.1 (http://www.sanger.ac.uk/Users/sgj/code/) |
| 45 | # * UniRef50 (http://www.ebi.ac.uk/uniref/) |
| 46 | # * Protein Clusters (ftp://ftp.ncbi.nih.gov/genomes/Bacteria/CLUSTERS/) |
| 47 | # The file cddid_all.tbl can be found at ftp://ftp.ncbi.nih.gov/pub/mmdb/cdd/. |
| 48 | |
| 49 | S="${WORKDIR}/diya-${PV/_/-}" |
| 50 | |
| 51 | SRC_TEST=do |
| 52 | |
| 53 | src_install() { |
| 54 | mydoc="INSTALL README docs/diya.html" |
| 55 | perl-module_src_install |
| 56 | insinto /usr/share/${PN} |
| 57 | doins -r diya.conf docs examples scripts || die |
| 58 | } |
| 59 | |
| 60 | |
| 61 | |
| 62 | 1.1 sci-biology/diya/metadata.xml |
| 63 | |
| 64 | file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/diya/metadata.xml?rev=1.1&view=markup |
| 65 | plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/diya/metadata.xml?rev=1.1&content-type=text/plain |
| 66 | |
| 67 | Index: metadata.xml |
| 68 | =================================================================== |
| 69 | <?xml version="1.0" encoding="UTF-8"?> |
| 70 | <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
| 71 | <pkgmetadata> |
| 72 | <maintainer> |
| 73 | <email>weaver@g.o</email> |
| 74 | <name>Andrey Kislyuk</name> |
| 75 | </maintainer> |
| 76 | <herd>sci-biology</herd> |
| 77 | </pkgmetadata> |
| 78 | |
| 79 | |
| 80 | |
| 81 | 1.1 sci-biology/diya/ChangeLog |
| 82 | |
| 83 | file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/diya/ChangeLog?rev=1.1&view=markup |
| 84 | plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/diya/ChangeLog?rev=1.1&content-type=text/plain |
| 85 | |
| 86 | Index: ChangeLog |
| 87 | =================================================================== |
| 88 | # ChangeLog for sci-biology/diya |
| 89 | # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 |
| 90 | # $Header: /var/cvsroot/gentoo-x86/sci-biology/diya/ChangeLog,v 1.1 2009/09/28 00:16:02 weaver Exp $ |
| 91 | |
| 92 | *diya-1.0_rc4 (27 Sep 2009) |
| 93 | |
| 94 | 27 Sep 2009; Andrey Kislyuk <weaver@g.o> +metadata.xml, |
| 95 | +diya-1.0_rc4.ebuild: |
| 96 | New package, ebuild written by me |