[gentoo-commits] proj/sci:master commit in: sci-biology/BBmap/

[Martin Mokrejs]

commit:     a685e8ebaa1adefe32f5dd6db4b3e38c93b1cd07
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Thu Mar  5 23:53:16 2015 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Thu Mar  5 23:53:16 2015 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=a685e8eb

version bump

Package-Manager: portage-2.2.15

 .../BBmap/{BBmap-31.40.ebuild => BBmap-34.56.ebuild}    | 17 +++++++++++++----
 sci-biology/BBmap/ChangeLog                             |  6 ++++++
 2 files changed, 19 insertions(+), 4 deletions(-)

diff --git a/sci-biology/BBmap/BBmap-31.40.ebuild b/sci-biology/BBmap/BBmap-34.56.ebuild
similarity index 62%
rename from sci-biology/BBmap/BBmap-31.40.ebuild
rename to sci-biology/BBmap/BBmap-34.56.ebuild
index e28c005..674e8f2 100644
--- a/sci-biology/BBmap/BBmap-31.40.ebuild
+++ b/sci-biology/BBmap/BBmap-34.56.ebuild
@@ -6,14 +6,13 @@ EAPI=5
 
 inherit java-pkg-2 java-ant-2
 
-DESCRIPTION="Short read aligner, K-mer-based error-correction and normalization, FASTA/FASTQ conversion"
+DESCRIPTION="Short read aligner, K-mer-based error-correction and normalization, FASTA/Q conversion"
 HOMEPAGE="http://sourceforge.net/projects/bbmap/"
-SRC_URI="http://sourceforge.net/projects/bbmap/files/BBMap_31.40_java7.tar.gz"
-#SRC_URI="http://sourceforge.net/projects/bbmap/files/BBMap_31.40_java6.tar.gz"
+SRC_URI="http://sourceforge.net/projects/bbmap/files/BBMap_"${PV}".tar.gz"
 
 LICENSE="BSD"
 SLOT="0"
-KEYWORDS=""
+KEYWORDS="~amd64"
 IUSE=""
 
 DEPEND="
@@ -23,3 +22,13 @@ RDEPEND="${DEPEND}
 	>=virtual/jre-1.7:*"
 
 S="${WORKDIR}"/bbmap
+
+src_compile(){
+	ant compile || die
+}
+
+src_install(){
+	dobin *.sh
+	dodoc docs/readme.txt
+	java-pkg_dojar lib/BBTools.jar
+}

diff --git a/sci-biology/BBmap/ChangeLog b/sci-biology/BBmap/ChangeLog
index 53acebd..8a90f18 100644
--- a/sci-biology/BBmap/ChangeLog
+++ b/sci-biology/BBmap/ChangeLog
@@ -2,6 +2,12 @@
 # Copyright 1999-2015 Gentoo Foundation; Distributed under the GPL v2
 # $Header: $
 
+*BBmap-34.56 (05 Mar 2015)
+
+  05 Mar 2015; Martin Mokrejs <mmokrejs@×××××××××××××××.cz> +BBmap-34.56.ebuild,
+  -BBmap-31.40.ebuild:
+  version bump
+
   18 Feb 2015; Justin Lecher <jlec@g.o> BBmap-31.40.ebuild:
   sci-biology/BBmap: fix SLOT operators