[gentoo-commits] proj/sci:master commit in: sci-biology/maker/

[Martin Mokrejs]

commit:     c5c8232d407b040a96110c2a04ca4049e6e7d86f
Author:     Martin Mokrejš <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
AuthorDate: Wed Dec 30 18:16:19 2015 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Wed Dec 30 18:16:19 2015 +0000
URL:        https://gitweb.gentoo.org/proj/sci.git/commit/?id=c5c8232d

sci-biology/maker: added openmpi as dependency; define our own src_install(); add einfo message; added dev-perl/forks-shared dependency

Package-Manager: portage-2.2.26

 sci-biology/maker/ChangeLog           |  4 ++++
 sci-biology/maker/maker-2.31.8.ebuild | 13 ++++++++++++-
 2 files changed, 16 insertions(+), 1 deletion(-)

diff --git a/sci-biology/maker/ChangeLog b/sci-biology/maker/ChangeLog
index 254d082..2befe1a 100644
--- a/sci-biology/maker/ChangeLog
+++ b/sci-biology/maker/ChangeLog
@@ -3,6 +3,10 @@
 # $Id$
 
   30 Dec 2015; Martin Mokrejs <mmokrejs@×××××××××××××××.cz> maker-2.31.8.ebuild:
+  sci-biology/maker: added openmpi as dependency; define our own src_install();
+  add einfo message; added dev-perl/forks-shared dependency
+
+  30 Dec 2015; Martin Mokrejs <mmokrejs@×××××××××××××××.cz> maker-2.31.8.ebuild:
   sci-biology/maker: added dependency on dev-perl/forks
 
   18 Dec 2015; Martin Mokrejs <mmokrejs@×××××××××××××××.cz> maker-2.31.8.ebuild:

diff --git a/sci-biology/maker/maker-2.31.8.ebuild b/sci-biology/maker/maker-2.31.8.ebuild
index 37e8755..b631293 100644
--- a/sci-biology/maker/maker-2.31.8.ebuild
+++ b/sci-biology/maker/maker-2.31.8.ebuild
@@ -22,7 +22,7 @@ IUSE="mpi"
 # http://search.cpan.org/~rybskej/forks-0.36/lib/forks.pm             # bug #566360
 # http://search.cpan.org/~rybskej/forks-0.36/lib/forks/shared.pm
 DEPEND="
-	mpi? ( sys-cluster/mpich2 )
+	mpi? ( sys-cluster/mpich2 || ( sys-cluster/openmpi ) )
 	dev-perl/DBI
 	dev-perl/DBD-SQLite
 	dev-perl/File-Which
@@ -36,6 +36,7 @@ DEPEND="
 	dev-perl/IO-Prompt
 	dev-perl/Perl-Unsafe-Signals
 	dev-perl/forks
+	dev-perl/forks-shared
 	>=sci-biology/bioperl-1.6
 	sci-biology/ncbi-tools || ( sci-biology/ncbi-tools++ )
 	sci-biology/snap
@@ -92,9 +93,19 @@ pkg_nofetch() {
 	einfo "MAKER install process will stop."
 	einfo "That in turn requires you to register at http://www.girinst.org/server/RepBase"
 	einfo "to obtain sci-biology/repeatmasker-libraries data file"
+	einfo "For execution through openmpi or mpich please read INSTALL file"
 }
 
 src_compile(){
 	perl Build.PL || die
 	./Build install || die
 }
+
+src_install(){
+	dobin bin/*
+	dodoc README INSTALL
+	insinto /usr/share/"{PN}"/GMOD/Apollo
+	doins GMOD/Apollo/gff3.tiers
+	insinto /usr/share/"{PN}"/GMOD/JBrowse
+	doins GMOD/JBrowse/maker.css
+}