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commit: e4d2f4aa20dd3df7e3fa7b34da4f5c597b506830 |
2 |
Author: Justin Lecher <jlec <AT> gentoo <DOT> org> |
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AuthorDate: Sat Feb 25 20:56:17 2017 +0000 |
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Commit: Justin Lecher <jlec <AT> gentoo <DOT> org> |
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CommitDate: Sat Feb 25 20:56:27 2017 +0000 |
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URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=e4d2f4aa |
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|
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sci-chemistry/pymol: Drop old |
9 |
|
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Package-Manager: Portage-2.3.3, Repoman-2.3.1 |
11 |
Signed-off-by: Justin Lecher <jlec <AT> gentoo.org> |
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|
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sci-chemistry/pymol/Manifest | 4 -- |
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sci-chemistry/pymol/pymol-1.7.6.0.ebuild | 110 ------------------------------- |
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sci-chemistry/pymol/pymol-1.7.7.2.ebuild | 110 ------------------------------- |
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sci-chemistry/pymol/pymol-1.8.2.1.ebuild | 109 ------------------------------ |
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4 files changed, 333 deletions(-) |
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|
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diff --git a/sci-chemistry/pymol/Manifest b/sci-chemistry/pymol/Manifest |
20 |
index d7e893dc07..1f72685ea0 100644 |
21 |
--- a/sci-chemistry/pymol/Manifest |
22 |
+++ b/sci-chemistry/pymol/Manifest |
23 |
@@ -1,6 +1,2 @@ |
24 |
-DIST pymol-1.7.0.0.png.xz 5392 SHA256 4c554a5c4f47946b6f7bae00209d5116305162534292735d30ae0794c56a8a0b SHA512 24bb1584b28688f5d5824e938f8500ca9887838adf490b4284c52f8c0da4c5ec4a56051ee80f48e4f34541ab53f9a4e00c849c382f1fd37c232fbea12d700105 WHIRLPOOL 395f978eb9ea3a8f8f39bf0694f71986ac9f8ebb307b90283c53fed85c4412d84e54af472f8646fcbd99c650039cb395a8f02b281168802c73ddb9bad175512b |
25 |
-DIST pymol-1.7.6.0.tar.xz 6510380 SHA256 31d4924378b38b65fae5b294e0755ee15916f9e845ef2efe5e2421f463bf3b91 SHA512 ff8c37de07e0ed8dc1176224eea439109f2bd5e42b5c08316f5737a2fdcf5a1f267b625c166fa740296c20ef089873ae1ad6cb89b11111e9d3aeda0b6035d55d WHIRLPOOL 3582cc846695ca580a4bcd31db8079f32d3cb0d84b8fa1afeb0b210d7004642bf58eab42cafd552f360a5e20b546e554cf5420b7dd2e8cefa5b956a9453215e2 |
26 |
-DIST pymol-1.7.7.2.tar.xz 6527780 SHA256 fc15fc8fbf23b422c5d19babd20e19b7d7ab8ee9532012c7b3a27b87af44fdae SHA512 faf3715cd6b9e7115f6501fc4480a6f71fe53d3b02b2eeefdd07a57d7c15b3621c05fd3894bb92ac4042edaa224d99c2be7488a762254d069c581974a0146179 WHIRLPOOL b52683ce1dc265fe302c974ccc1bfa9e55365e8502f944cf6527c0071f207fcb54e8b3ad38fd684b66c66f85fa6a03f2f1178b90fd406b9f7561d956c704fb9a |
27 |
DIST pymol-1.8.4.0.png.xz 19528 SHA256 e2c956b39965130a3dc51c2c1b1090bee6bf591885069b2ddb77c0991e9e4928 SHA512 40bb0d3f226476f6e047b5361956aad955232a97641474765eaa5204f0539aee3810e0266213618a45364f9f31f6eb18380b17e0c79f64065f7b62a9016caa7c WHIRLPOOL 1336c20e068b71cdf35118c84b5df8485c86bc51eed7f542a483fb78ce374ca76e4aed3518aced0a6f8ea49e0b180004e567cc059ac52a27a3d616adb282cea2 |
28 |
-DIST pymol-v1.8.2.1.tar.bz2 8694029 SHA256 fc5d33d7e36364567462cee19b9b132530a83cbab3fafcf373f2a17f127b3f4e SHA512 c6768ab75f715e48fbaa3d0c0664f717b05212c6d004cacea0e9a79ead98375ae7773b4a5c4c476a3b3731be910e3df585b2980fd97fd3fb2afb5ec91304adce WHIRLPOOL 4ad164a3629e15df12ce75a769e34b1af2f87f68f88988919c0d0e8d80fe4062283102003d222040b9a8f0bd91e756eac494e67477242b48cd04947d34cb7c48 |
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DIST pymol-v1.8.4.0.tar.bz2 8717344 SHA256 b6147befe74844dd23550461b831b2fa6d170d4456f0059cf93fb1e8cb43d279 SHA512 73a810adfc31adaf0f3fa25512084882c87b0782c8af716ac0203a5b5b7f0b9fedfbce3d129bffef7b52044e92b0542e683966b2acf961c4dac17fbba72dd7fe WHIRLPOOL 3943a619ca00cc2bfb51ff4dffa0166856b4425c7518d91b1ff2a048caa53dcb7411c64b246014b860b7f036de582e9efdc09783b3918283f0a96ee5130c7287 |
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|
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diff --git a/sci-chemistry/pymol/pymol-1.7.6.0.ebuild b/sci-chemistry/pymol/pymol-1.7.6.0.ebuild |
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deleted file mode 100644 |
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index 4033493c22..0000000000 |
34 |
--- a/sci-chemistry/pymol/pymol-1.7.6.0.ebuild |
35 |
+++ /dev/null |
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@@ -1,110 +0,0 @@ |
37 |
-# Copyright 1999-2015 Gentoo Foundation |
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-# Distributed under the terms of the GNU General Public License v2 |
39 |
-# $Id$ |
40 |
- |
41 |
-EAPI=5 |
42 |
- |
43 |
-PYTHON_COMPAT=( python2_7 ) |
44 |
-PYTHON_REQ_USE="tk" |
45 |
- |
46 |
-inherit distutils-r1 eutils fdo-mime flag-o-matic versionator |
47 |
- |
48 |
-DESCRIPTION="A Python-extensible molecular graphics system" |
49 |
-HOMEPAGE="http://www.pymol.org/" |
50 |
-SRC_URI=" |
51 |
- https://dev.gentoo.org/~jlec/distfiles/${PN}-1.7.0.0.png.xz |
52 |
- https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz |
53 |
-" |
54 |
-# mirror://sourceforge/project/${PN}/${PN}/$(get_version_component_range 1-2)/${PN}-v${PV}.tar.bz2 |
55 |
-# git archive -v --prefix=${P}/ master -o ${P}.tar.xz |
56 |
- |
57 |
-LICENSE="PSF-2.2" |
58 |
-SLOT="0" |
59 |
-KEYWORDS="amd64 ~ppc x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos" |
60 |
-IUSE="web" |
61 |
- |
62 |
-DEPEND=" |
63 |
- dev-python/numpy[${PYTHON_USEDEP}] |
64 |
- dev-python/pyopengl[${PYTHON_USEDEP}] |
65 |
- media-libs/freeglut |
66 |
- media-libs/freetype:2 |
67 |
- media-libs/glew:0= |
68 |
- media-libs/libpng:0= |
69 |
- media-video/mpeg-tools |
70 |
- sys-libs/zlib |
71 |
- virtual/python-pmw[${PYTHON_USEDEP}] |
72 |
- !sci-chemistry/pymol-apbs-plugin[${PYTHON_USEDEP}] |
73 |
- web? ( !dev-python/webpy[${PYTHON_USEDEP}] )" |
74 |
-RDEPEND="${DEPEND}" |
75 |
- |
76 |
-S="${WORKDIR}"/${P}/${PN} |
77 |
- |
78 |
-python_prepare_all() { |
79 |
- sed \ |
80 |
- -e "s:\"/usr:\"${EPREFIX}/usr:g" \ |
81 |
- -e "/ext_comp_args.*+=/s:\[.*\]$:\[\]:g" \ |
82 |
- -e "/import/s:argparse:argparseX:g" \ |
83 |
- -i setup.py || die |
84 |
- |
85 |
- sed \ |
86 |
- -e "s:/opt/local:${EPREFIX}/usr:g" \ |
87 |
- -e '/ext_comp_args/s:\[.*\]:[]:g' \ |
88 |
- -i setup.py || die |
89 |
- |
90 |
- append-cxxflags -std=c++0x |
91 |
- |
92 |
- distutils-r1_python_prepare_all |
93 |
-} |
94 |
- |
95 |
-python_install() { |
96 |
- distutils-r1_python_install --pymol-path="${EPREFIX}/usr/share/pymol" |
97 |
- |
98 |
- sed \ |
99 |
- -e '1d' \ |
100 |
- -e "/APBS_BINARY_LOCATION/s:None:\"${EPREFIX}/usr/bin/apbs\":g" \ |
101 |
- -e "/APBS_PSIZE_LOCATION/s:None:\"$(python_get_sitedir)/pdb2pqr/src/\":g" \ |
102 |
- -e "/APBS_PDB2PQR_LOCATION/s:None:\"$(python_get_sitedir)/pdb2pqr/\":g" \ |
103 |
- -i "${D}/$(python_get_sitedir)"/pmg_tk/startup/apbs_tools.py || die |
104 |
-} |
105 |
- |
106 |
-python_install_all() { |
107 |
- distutils-r1_python_install_all |
108 |
- |
109 |
- sed \ |
110 |
- -e '1i#!/usr/bin/env python' \ |
111 |
- "${D}/$(python_get_sitedir)"/pymol/__init__.py > "${T}"/${PN} || die |
112 |
- |
113 |
- python_foreach_impl python_doscript "${T}"/${PN} |
114 |
- |
115 |
- # These environment variables should not go in the wrapper script, or else |
116 |
- # it will be impossible to use the PyMOL libraries from Python. |
117 |
- cat >> "${T}"/20pymol <<- EOF |
118 |
- PYMOL_PATH="${EPREFIX}/usr/share/pymol" |
119 |
- PYMOL_DATA="${EPREFIX}/usr/share/pymol/data" |
120 |
- PYMOL_SCRIPTS="${EPREFIX}/usr/share/pymol/scripts" |
121 |
- EOF |
122 |
- |
123 |
- doenvd "${T}"/20pymol |
124 |
- |
125 |
- newicon "${WORKDIR}"/${PN}-1.7.0.0.png ${PN}.png |
126 |
- make_desktop_entry ${PN} PyMol ${PN} \ |
127 |
- "Graphics;Education;Science;Chemistry;" \ |
128 |
- "MimeType=chemical/x-pdb;chemical/x-mdl-molfile;chemical/x-mol2;chemical/seq-aa-fasta;chemical/seq-na-fasta;chemical/x-xyz;chemical/x-mdl-sdf;" |
129 |
- |
130 |
- if ! use web; then |
131 |
- rm -rf "${D}/$(python_get_sitedir)/web" || die |
132 |
- fi |
133 |
- |
134 |
- rm -f "${ED}"/usr/share/${PN}/LICENSE || die |
135 |
-} |
136 |
- |
137 |
-pkg_postinst() { |
138 |
- fdo-mime_desktop_database_update |
139 |
- fdo-mime_mime_database_update |
140 |
- optfeature "Electrostatic calculations" sci-chemistry/apbs sci-chemistry/pdb2pqr |
141 |
-} |
142 |
- |
143 |
-pkg_postrm() { |
144 |
- fdo-mime_desktop_database_update |
145 |
- fdo-mime_mime_database_update |
146 |
-} |
147 |
|
148 |
diff --git a/sci-chemistry/pymol/pymol-1.7.7.2.ebuild b/sci-chemistry/pymol/pymol-1.7.7.2.ebuild |
149 |
deleted file mode 100644 |
150 |
index 7d6aab4313..0000000000 |
151 |
--- a/sci-chemistry/pymol/pymol-1.7.7.2.ebuild |
152 |
+++ /dev/null |
153 |
@@ -1,110 +0,0 @@ |
154 |
-# Copyright 1999-2015 Gentoo Foundation |
155 |
-# Distributed under the terms of the GNU General Public License v2 |
156 |
-# $Id$ |
157 |
- |
158 |
-EAPI=5 |
159 |
- |
160 |
-PYTHON_COMPAT=( python2_7 ) |
161 |
-PYTHON_REQ_USE="tk" |
162 |
- |
163 |
-inherit distutils-r1 eutils fdo-mime flag-o-matic versionator |
164 |
- |
165 |
-DESCRIPTION="A Python-extensible molecular graphics system" |
166 |
-HOMEPAGE="http://www.pymol.org/" |
167 |
-SRC_URI=" |
168 |
- https://dev.gentoo.org/~jlec/distfiles/${PN}-1.7.0.0.png.xz |
169 |
- https://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz |
170 |
-" |
171 |
-# mirror://sourceforge/project/${PN}/${PN}/$(get_version_component_range 1-2)/${PN}-v${PV}.tar.bz2 |
172 |
-# git archive -v --prefix=${P}/ master -o ${P}.tar.xz |
173 |
- |
174 |
-LICENSE="PSF-2.2" |
175 |
-SLOT="0" |
176 |
-KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos" |
177 |
-IUSE="web" |
178 |
- |
179 |
-DEPEND=" |
180 |
- dev-python/numpy[${PYTHON_USEDEP}] |
181 |
- dev-python/pyopengl[${PYTHON_USEDEP}] |
182 |
- media-libs/freeglut |
183 |
- media-libs/freetype:2 |
184 |
- media-libs/glew:0= |
185 |
- media-libs/libpng:0= |
186 |
- media-video/mpeg-tools |
187 |
- sys-libs/zlib |
188 |
- virtual/python-pmw[${PYTHON_USEDEP}] |
189 |
- !sci-chemistry/pymol-apbs-plugin[${PYTHON_USEDEP}] |
190 |
- web? ( !dev-python/webpy[${PYTHON_USEDEP}] )" |
191 |
-RDEPEND="${DEPEND}" |
192 |
- |
193 |
-S="${WORKDIR}"/${P}/${PN} |
194 |
- |
195 |
-python_prepare_all() { |
196 |
- sed \ |
197 |
- -e "s:\"/usr:\"${EPREFIX}/usr:g" \ |
198 |
- -e "/ext_comp_args.*+=/s:\[.*\]$:\[\]:g" \ |
199 |
- -e "/import/s:argparse:argparseX:g" \ |
200 |
- -i setup.py || die |
201 |
- |
202 |
- sed \ |
203 |
- -e "s:/opt/local:${EPREFIX}/usr:g" \ |
204 |
- -e '/ext_comp_args/s:\[.*\]:[]:g' \ |
205 |
- -i setup.py || die |
206 |
- |
207 |
- append-cxxflags -std=c++0x |
208 |
- |
209 |
- distutils-r1_python_prepare_all |
210 |
-} |
211 |
- |
212 |
-python_install() { |
213 |
- distutils-r1_python_install --pymol-path="${EPREFIX}/usr/share/pymol" |
214 |
- |
215 |
- sed \ |
216 |
- -e '1d' \ |
217 |
- -e "/APBS_BINARY_LOCATION/s:None:\"${EPREFIX}/usr/bin/apbs\":g" \ |
218 |
- -e "/APBS_PSIZE_LOCATION/s:None:\"$(python_get_sitedir)/pdb2pqr/src/\":g" \ |
219 |
- -e "/APBS_PDB2PQR_LOCATION/s:None:\"$(python_get_sitedir)/pdb2pqr/\":g" \ |
220 |
- -i "${D}/$(python_get_sitedir)"/pmg_tk/startup/apbs_tools.py || die |
221 |
-} |
222 |
- |
223 |
-python_install_all() { |
224 |
- distutils-r1_python_install_all |
225 |
- |
226 |
- sed \ |
227 |
- -e '1i#!/usr/bin/env python' \ |
228 |
- "${D}/$(python_get_sitedir)"/pymol/__init__.py > "${T}"/${PN} || die |
229 |
- |
230 |
- python_foreach_impl python_doscript "${T}"/${PN} |
231 |
- |
232 |
- # These environment variables should not go in the wrapper script, or else |
233 |
- # it will be impossible to use the PyMOL libraries from Python. |
234 |
- cat >> "${T}"/20pymol <<- EOF |
235 |
- PYMOL_PATH="${EPREFIX}/usr/share/pymol" |
236 |
- PYMOL_DATA="${EPREFIX}/usr/share/pymol/data" |
237 |
- PYMOL_SCRIPTS="${EPREFIX}/usr/share/pymol/scripts" |
238 |
- EOF |
239 |
- |
240 |
- doenvd "${T}"/20pymol |
241 |
- |
242 |
- newicon "${WORKDIR}"/${PN}-1.7.0.0.png ${PN}.png |
243 |
- make_desktop_entry ${PN} PyMol ${PN} \ |
244 |
- "Graphics;Education;Science;Chemistry;" \ |
245 |
- "MimeType=chemical/x-pdb;chemical/x-mdl-molfile;chemical/x-mol2;chemical/seq-aa-fasta;chemical/seq-na-fasta;chemical/x-xyz;chemical/x-mdl-sdf;" |
246 |
- |
247 |
- if ! use web; then |
248 |
- rm -rf "${D}/$(python_get_sitedir)/web" || die |
249 |
- fi |
250 |
- |
251 |
- rm -f "${ED}"/usr/share/${PN}/LICENSE || die |
252 |
-} |
253 |
- |
254 |
-pkg_postinst() { |
255 |
- fdo-mime_desktop_database_update |
256 |
- fdo-mime_mime_database_update |
257 |
- optfeature "Electrostatic calculations" sci-chemistry/apbs sci-chemistry/pdb2pqr |
258 |
-} |
259 |
- |
260 |
-pkg_postrm() { |
261 |
- fdo-mime_desktop_database_update |
262 |
- fdo-mime_mime_database_update |
263 |
-} |
264 |
|
265 |
diff --git a/sci-chemistry/pymol/pymol-1.8.2.1.ebuild b/sci-chemistry/pymol/pymol-1.8.2.1.ebuild |
266 |
deleted file mode 100644 |
267 |
index e86a042c8d..0000000000 |
268 |
--- a/sci-chemistry/pymol/pymol-1.8.2.1.ebuild |
269 |
+++ /dev/null |
270 |
@@ -1,109 +0,0 @@ |
271 |
-# Copyright 1999-2016 Gentoo Foundation |
272 |
-# Distributed under the terms of the GNU General Public License v2 |
273 |
-# $Id$ |
274 |
- |
275 |
-EAPI=5 |
276 |
- |
277 |
-PYTHON_COMPAT=( python2_7 ) |
278 |
-PYTHON_REQ_USE="tk" |
279 |
- |
280 |
-inherit distutils-r1 eutils fdo-mime flag-o-matic versionator |
281 |
- |
282 |
-DESCRIPTION="A Python-extensible molecular graphics system" |
283 |
-HOMEPAGE="http://www.pymol.org/" |
284 |
-SRC_URI=" |
285 |
- https://dev.gentoo.org/~jlec/distfiles/${PN}-1.7.0.0.png.xz |
286 |
- mirror://sourceforge/project/${PN}/${PN}/$(get_version_component_range 1-2)/${PN}-v${PV}.tar.bz2 |
287 |
- " |
288 |
-# git archive -v --prefix=${P}/ master -o ${P}.tar.xz |
289 |
-RESTRICT="mirror" |
290 |
-LICENSE="PSF-2.2" |
291 |
-SLOT="0" |
292 |
-KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos" |
293 |
-IUSE="web" |
294 |
- |
295 |
-DEPEND=" |
296 |
- dev-python/numpy[${PYTHON_USEDEP}] |
297 |
- dev-python/pyopengl[${PYTHON_USEDEP}] |
298 |
- media-libs/freeglut |
299 |
- media-libs/freetype:2 |
300 |
- media-libs/glew:0= |
301 |
- media-libs/libpng:0= |
302 |
- media-video/mpeg-tools |
303 |
- sys-libs/zlib |
304 |
- virtual/python-pmw[${PYTHON_USEDEP}] |
305 |
- !sci-chemistry/pymol-apbs-plugin[${PYTHON_USEDEP}] |
306 |
- web? ( !dev-python/webpy[${PYTHON_USEDEP}] )" |
307 |
-RDEPEND="${DEPEND}" |
308 |
- |
309 |
-S="${WORKDIR}"/${PN} |
310 |
- |
311 |
-python_prepare_all() { |
312 |
- sed \ |
313 |
- -e "s:\"/usr:\"${EPREFIX}/usr:g" \ |
314 |
- -e "/ext_comp_args.*+=/s:\[.*\]$:\[\]:g" \ |
315 |
- -e "/import/s:argparse:argparseX:g" \ |
316 |
- -i setup.py || die |
317 |
- |
318 |
- sed \ |
319 |
- -e "s:/opt/local:${EPREFIX}/usr:g" \ |
320 |
- -e '/ext_comp_args/s:\[.*\]:[]:g' \ |
321 |
- -i setup.py || die |
322 |
- |
323 |
- append-cxxflags -std=c++0x |
324 |
- |
325 |
- distutils-r1_python_prepare_all |
326 |
-} |
327 |
- |
328 |
-python_install() { |
329 |
- distutils-r1_python_install --pymol-path="${EPREFIX}/usr/share/pymol" |
330 |
- |
331 |
- sed \ |
332 |
- -e '1d' \ |
333 |
- -e "/APBS_BINARY_LOCATION/s:None:\"${EPREFIX}/usr/bin/apbs\":g" \ |
334 |
- -e "/APBS_PSIZE_LOCATION/s:None:\"$(python_get_sitedir)/pdb2pqr/src/\":g" \ |
335 |
- -e "/APBS_PDB2PQR_LOCATION/s:None:\"$(python_get_sitedir)/pdb2pqr/\":g" \ |
336 |
- -i "${D}/$(python_get_sitedir)"/pmg_tk/startup/apbs_tools.py || die |
337 |
-} |
338 |
- |
339 |
-python_install_all() { |
340 |
- distutils-r1_python_install_all |
341 |
- |
342 |
- sed \ |
343 |
- -e '1i#!/usr/bin/env python' \ |
344 |
- "${D}/$(python_get_sitedir)"/pymol/__init__.py > "${T}"/${PN} || die |
345 |
- |
346 |
- python_foreach_impl python_doscript "${T}"/${PN} |
347 |
- |
348 |
- # These environment variables should not go in the wrapper script, or else |
349 |
- # it will be impossible to use the PyMOL libraries from Python. |
350 |
- cat >> "${T}"/20pymol <<- EOF |
351 |
- PYMOL_PATH="${EPREFIX}/usr/share/pymol" |
352 |
- PYMOL_DATA="${EPREFIX}/usr/share/pymol/data" |
353 |
- PYMOL_SCRIPTS="${EPREFIX}/usr/share/pymol/scripts" |
354 |
- EOF |
355 |
- |
356 |
- doenvd "${T}"/20pymol |
357 |
- |
358 |
- newicon "${WORKDIR}"/${PN}-1.7.0.0.png ${PN}.png |
359 |
- make_desktop_entry ${PN} PyMol ${PN} \ |
360 |
- "Graphics;Education;Science;Chemistry;" \ |
361 |
- "MimeType=chemical/x-pdb;chemical/x-mdl-molfile;chemical/x-mol2;chemical/seq-aa-fasta;chemical/seq-na-fasta;chemical/x-xyz;chemical/x-mdl-sdf;" |
362 |
- |
363 |
- if ! use web; then |
364 |
- rm -rf "${D}/$(python_get_sitedir)/web" || die |
365 |
- fi |
366 |
- |
367 |
- rm -f "${ED}"/usr/share/${PN}/LICENSE || die |
368 |
-} |
369 |
- |
370 |
-pkg_postinst() { |
371 |
- fdo-mime_desktop_database_update |
372 |
- fdo-mime_mime_database_update |
373 |
- optfeature "Electrostatic calculations" sci-chemistry/apbs sci-chemistry/pdb2pqr |
374 |
-} |
375 |
- |
376 |
-pkg_postrm() { |
377 |
- fdo-mime_desktop_database_update |
378 |
- fdo-mime_mime_database_update |
379 |
-} |