1 |
commit: 650bfa08aad0ce31430f6a848b6c6631eada41be |
2 |
Author: Bernd Waibel <waebbl <AT> gmail <DOT> com> |
3 |
AuthorDate: Sun Sep 15 13:06:18 2019 +0000 |
4 |
Commit: Joonas Niilola <juippis <AT> gentoo <DOT> org> |
5 |
CommitDate: Sun Oct 13 11:21:58 2019 +0000 |
6 |
URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=650bfa08 |
7 |
|
8 |
sci-libs/med: switch to cmake based build |
9 |
|
10 |
The patch moves back to the cmake based build used in sci-libs/libmed. |
11 |
The issues with sci-libs/gmsh not building with cmake built med have |
12 |
been resolved. See https://bugs.gentoo.org/693146 comments 19-22 |
13 |
|
14 |
Closes: https://bugs.gentoo.org/694468 |
15 |
Package-Manager: Portage-2.3.76, Repoman-2.3.17 |
16 |
Signed-off-by: Bernd Waibel <waebbl <AT> gmail.com> |
17 |
Closes: https://github.com/gentoo/gentoo/pull/12930 |
18 |
Signed-off-by: Joonas Niilola <juippis <AT> gentoo.org> |
19 |
|
20 |
sci-libs/med/files/med-3.3.1-cmake-fortran.patch | 21 ++++ |
21 |
.../files/med-3.3.1-disable-python-compile.patch | 17 +++ |
22 |
sci-libs/med/files/med-4.0.0-cmakelist.patch | 59 +++++++++++ |
23 |
sci-libs/med/files/med-4.0.0-installdoc.patch | 15 +++ |
24 |
sci-libs/med/med-4.0.0-r2.ebuild | 117 +++++++++++++++++++++ |
25 |
5 files changed, 229 insertions(+) |
26 |
|
27 |
diff --git a/sci-libs/med/files/med-3.3.1-cmake-fortran.patch b/sci-libs/med/files/med-3.3.1-cmake-fortran.patch |
28 |
new file mode 100644 |
29 |
index 00000000000..1f475d58484 |
30 |
--- /dev/null |
31 |
+++ b/sci-libs/med/files/med-3.3.1-cmake-fortran.patch |
32 |
@@ -0,0 +1,21 @@ |
33 |
+Make cmake properly disable fortran upon user requirments |
34 |
+ |
35 |
+--- ./CMakeLists.txt.orig 2016-07-01 15:28:57.139304608 +0300 |
36 |
++++ ./CMakeLists.txt 2016-07-01 15:34:22.295899455 +0300 |
37 |
+@@ -8,10 +8,13 @@ |
38 |
+ |
39 |
+ INCLUDE(CheckLanguage) |
40 |
+ CHECK_LANGUAGE(Fortran) |
41 |
+-IF(CMAKE_Fortran_COMPILER) |
42 |
++OPTION (MEDFILE_BUILD_FORTRAN "Build fortran library" ON) |
43 |
++IF(MEDFILE_BUILD_FORTRAN) |
44 |
+ ENABLE_LANGUAGE(Fortran) |
45 |
++ IF(NOT CMAKE_Fortran_COMPILER) |
46 |
++ MESSAGE(FATAL_EROOR "Fortran support was requested but not found") |
47 |
++ ENDIF() |
48 |
+ ELSE() |
49 |
+- MESSAGE(STATUS "No Fortran support") |
50 |
+ ENDIF() |
51 |
+ |
52 |
+ ## Version number |
53 |
+ |
54 |
|
55 |
diff --git a/sci-libs/med/files/med-3.3.1-disable-python-compile.patch b/sci-libs/med/files/med-3.3.1-disable-python-compile.patch |
56 |
new file mode 100644 |
57 |
index 00000000000..642b404ba88 |
58 |
--- /dev/null |
59 |
+++ b/sci-libs/med/files/med-3.3.1-disable-python-compile.patch |
60 |
@@ -0,0 +1,17 @@ |
61 |
+--- ./config/cmake_files/medMacros.cmake 2016-10-24 09:55:35.000000000 +0200 |
62 |
++++ ./config/cmake_files/medMacros.cmake.new 2018-01-24 10:50:15.146953227 +0100 |
63 |
+@@ -412,9 +412,9 @@ |
64 |
+ FOREACH(input ${PYFILE2COMPINST}) |
65 |
+ GET_FILENAME_COMPONENT(inputname ${input} NAME) |
66 |
+ INSTALL(FILES ${input} DESTINATION ${CMAKE_INSTALL_PREFIX}/${PYFILELOC}) |
67 |
+- INSTALL(CODE "MESSAGE(STATUS \"py compiling ${CMAKE_INSTALL_PREFIX}/${PYFILELOC}/${inputname}\")") |
68 |
+- INSTALL(CODE "SET(CMD \"import py_compile ; py_compile.compile('${CMAKE_INSTALL_PREFIX}/${PYFILELOC}/${inputname}')\")") |
69 |
+- INSTALL(CODE "EXECUTE_PROCESS(COMMAND ${PYTHON_EXECUTABLE} -c \"\${CMD}\")") |
70 |
+- INSTALL(CODE "EXECUTE_PROCESS(COMMAND ${PYTHON_EXECUTABLE} -O -c \"\${CMD}\")") |
71 |
++ #INSTALL(CODE "MESSAGE(STATUS \"py compiling ${CMAKE_INSTALL_PREFIX}/${PYFILELOC}/${inputname}\")") |
72 |
++ #INSTALL(CODE "SET(CMD \"import py_compile ; py_compile.compile('${CMAKE_INSTALL_PREFIX}/${PYFILELOC}/${inputname}')\")") |
73 |
++ #INSTALL(CODE "EXECUTE_PROCESS(COMMAND ${PYTHON_EXECUTABLE} -c \"\${CMD}\")") |
74 |
++ #INSTALL(CODE "EXECUTE_PROCESS(COMMAND ${PYTHON_EXECUTABLE} -O -c \"\${CMD}\")") |
75 |
+ ENDFOREACH(input ${PYFILE2COMPINST}) |
76 |
+ ENDMACRO(INSTALL_AND_COMPILE_PYTHON_FILE PYFILE2COMPINST PYFILELOC) |
77 |
+ |
78 |
|
79 |
diff --git a/sci-libs/med/files/med-4.0.0-cmakelist.patch b/sci-libs/med/files/med-4.0.0-cmakelist.patch |
80 |
new file mode 100644 |
81 |
index 00000000000..4c023cf24b3 |
82 |
--- /dev/null |
83 |
+++ b/sci-libs/med/files/med-4.0.0-cmakelist.patch |
84 |
@@ -0,0 +1,59 @@ |
85 |
+--- a/src/CMakeLists.txt 2018-07-28 16:37:01.180598992 +0200 |
86 |
++++ a/src/CMakeLists.txt.new 2018-07-28 17:14:49.147775461 +0200 |
87 |
+@@ -1,7 +1,3 @@ |
88 |
+-INCLUDE_DIRECTORIES( |
89 |
+- ${HDF5_INCLUDE_DIRS} |
90 |
+- ${MPI_INCLUDE_DIRS}) |
91 |
+- |
92 |
+ # On Win platform, we need to make sure symbols are properly exported in |
93 |
+ # the intermediary OBJECT targes built in the sub-directories: |
94 |
+ # The definition "-D<target>_EXPORTS" is normally added automatically by CMake |
95 |
+@@ -19,6 +15,12 @@ |
96 |
+ INCLUDE_DIRECTORIES(${PROJECT_BINARY_DIR}/include |
97 |
+ ${PROJECT_SOURCE_DIR}/include) |
98 |
+ |
99 |
++# these includes must go after project ones to avoid masking by |
100 |
++# previous versions already installed |
101 |
++INCLUDE_DIRECTORIES( |
102 |
++ ${HDF5_INCLUDE_DIRS} |
103 |
++ ${MPI_INCLUDE_DIRS}) |
104 |
++ |
105 |
+ # Get pure C intermediary targets: |
106 |
+ ADD_SUBDIRECTORY(hdfi) |
107 |
+ ADD_SUBDIRECTORY(ci) |
108 |
+--- a/tools/mdump/CMakeLists.txt 2018-07-29 09:24:35.714930029 +0200 |
109 |
++++ a/tools/mdump/CMakeLists.txt.new 2018-07-29 09:58:48.667089767 +0200 |
110 |
+@@ -33,6 +33,6 @@ |
111 |
+ CONFIGURE_FILE(xmdump3.in ${PROJECT_BINARY_DIR}/xmdump3 @ONLY) |
112 |
+ |
113 |
+ INSTALL(PROGRAMS ${PROJECT_BINARY_DIR}/xmdump2 ${PROJECT_BINARY_DIR}/xmdump3 DESTINATION bin) |
114 |
+-INSTALL(CODE "EXECUTE_PROCESS(COMMAND ${CMAKE_COMMAND} -E create_symlink mdump3 mdump WORKING_DIRECTORY ${DESTDIR}${CMAKE_INSTALL_PREFIX}/bin)") |
115 |
+-INSTALL(CODE "EXECUTE_PROCESS(COMMAND ${CMAKE_COMMAND} -E create_symlink xmdump3 xmdump WORKING_DIRECTORY ${DESTDIR}${CMAKE_INSTALL_PREFIX}/bin)") |
116 |
++INSTALL(CODE "EXECUTE_PROCESS(COMMAND ${CMAKE_COMMAND} -E create_symlink mdump3 mdump WORKING_DIRECTORY \"\$ENV{DESTDIR}\${CMAKE_INSTALL_PREFIX}/bin\")") |
117 |
++INSTALL(CODE "EXECUTE_PROCESS(COMMAND ${CMAKE_COMMAND} -E create_symlink xmdump3 xmdump WORKING_DIRECTORY \"\$ENV{DESTDIR}\${CMAKE_INSTALL_PREFIX}/bin\")") |
118 |
+ |
119 |
+--- a/src/2.3.6/CMakeLists.txt 2018-07-30 22:45:56.205079148 +0200 |
120 |
++++ a/src/2.3.6/CMakeLists.txt.new 2018-07-30 22:49:43.520096835 +0200 |
121 |
+@@ -1,8 +1,3 @@ |
122 |
+-INCLUDE_DIRECTORIES( |
123 |
+- ${HDF5_INCLUDE_DIRS} |
124 |
+- ${MPI_INCLUDE_DIRS} |
125 |
+-) |
126 |
+- |
127 |
+ SET(med236_SOURCES MEDaffiche.c) |
128 |
+ |
129 |
+ # Definitions |
130 |
+@@ -13,6 +8,13 @@ |
131 |
+ "${PROJECT_BINARY_DIR}/include/2.3.6" |
132 |
+ "${PROJECT_SOURCE_DIR}/include/2.3.6") |
133 |
+ |
134 |
++# these includes must go after project ones to avoid masking by |
135 |
++# previous versions already installed |
136 |
++INCLUDE_DIRECTORIES( |
137 |
++ ${HDF5_INCLUDE_DIRS} |
138 |
++ ${MPI_INCLUDE_DIRS} |
139 |
++) |
140 |
++ |
141 |
+ # Build intermediate targets _cfi236, _hdfi236, _misc236 and _ci236 |
142 |
+ # (and their static counterpart): |
143 |
+ ADD_SUBDIRECTORY(cfi) |
144 |
|
145 |
diff --git a/sci-libs/med/files/med-4.0.0-installdoc.patch b/sci-libs/med/files/med-4.0.0-installdoc.patch |
146 |
new file mode 100644 |
147 |
index 00000000000..2d9361c4265 |
148 |
--- /dev/null |
149 |
+++ b/sci-libs/med/files/med-4.0.0-installdoc.patch |
150 |
@@ -0,0 +1,15 @@ |
151 |
+--- ./CMakeLists.txt 2019-02-26 11:59:15.276962751 +0100 |
152 |
++++ ./CMakeLists.txt.new 2019-02-26 11:59:26.660962707 +0100 |
153 |
+@@ -137,9 +137,10 @@ |
154 |
+ ENDIF() |
155 |
+ |
156 |
+ ## Installation of the doc |
157 |
++set(MEDFILE_DOC_DIRECTORY ${CMAKE_INSTALL_PREFIX}/share/doc/med-fichier-${MED_STR_VERSION} CACHE PATH "install dir for documentation") |
158 |
+ IF(MEDFILE_INSTALL_DOC OR MEDFILE_BUILD_DOC) |
159 |
+- INSTALL(DIRECTORY doc/html.dox/ DESTINATION ${CMAKE_INSTALL_PREFIX}/share/doc/med-fichier-${MED_STR_VERSION} REGEX "Makefile*" EXCLUDE PATTERN "*.am" EXCLUDE) |
160 |
+- INSTALL(DIRECTORY doc/gif doc/jpg doc/png DESTINATION ${CMAKE_INSTALL_PREFIX}/share/doc/med-fichier-${MED_STR_VERSION} FILES_MATCHING PATTERN "*.gif" PATTERN "*.jpg" PATTERN "*.svg" PATTERN "*.png") |
161 |
++ INSTALL(DIRECTORY doc/html.dox/ DESTINATION ${MEDFILE_DOC_DIRECTORY} REGEX "Makefile*" EXCLUDE PATTERN "*.am" EXCLUDE) |
162 |
++ INSTALL(DIRECTORY doc/gif doc/jpg doc/png DESTINATION ${MEDFILE_DOC_DIRECTORY} FILES_MATCHING PATTERN "*.gif" PATTERN "*.jpg" PATTERN "*.svg" PATTERN "*.png") |
163 |
+ ENDIF() |
164 |
+ |
165 |
+ ####################### |
166 |
|
167 |
diff --git a/sci-libs/med/med-4.0.0-r2.ebuild b/sci-libs/med/med-4.0.0-r2.ebuild |
168 |
new file mode 100644 |
169 |
index 00000000000..837437559bd |
170 |
--- /dev/null |
171 |
+++ b/sci-libs/med/med-4.0.0-r2.ebuild |
172 |
@@ -0,0 +1,117 @@ |
173 |
+# Copyright 1999-2019 Gentoo Authors |
174 |
+# Distributed under the terms of the GNU General Public License v2 |
175 |
+ |
176 |
+EAPI=7 |
177 |
+ |
178 |
+# EAPI=7 uses ninja generator by default but it's incompatible with USE=fortran |
179 |
+# https://github.com/Kitware/ninja/tree/features-for-fortran#readme |
180 |
+CMAKE_MAKEFILE_GENERATOR=emake |
181 |
+ |
182 |
+FORTRAN_NEEDED=fortran |
183 |
+ |
184 |
+# NOTE:The build for multiple python versions should be possible but |
185 |
+# complicated for the build system |
186 |
+PYTHON_COMPAT=( python3_{5,6,7} ) |
187 |
+ |
188 |
+inherit cmake-utils fortran-2 python-single-r1 |
189 |
+ |
190 |
+DESCRIPTION="A library to store and exchange meshed data or computation results" |
191 |
+HOMEPAGE="https://www.salome-platform.org/user-section/about/med" |
192 |
+SRC_URI="https://files.salome-platform.org/Salome/other/${P}.tar.gz" |
193 |
+ |
194 |
+LICENSE="LGPL-3" |
195 |
+SLOT="0" |
196 |
+KEYWORDS="~amd64 ~x86" |
197 |
+IUSE="doc fortran mpi python test" |
198 |
+ |
199 |
+REQUIRED_USE="python? ( ${PYTHON_REQUIRED_USE} )" |
200 |
+ |
201 |
+RESTRICT="python? ( test )" |
202 |
+ |
203 |
+# dev-lang/tk is needed for wish-based xmdump utility |
204 |
+RDEPEND=" |
205 |
+ !sci-libs/libmed |
206 |
+ dev-lang/tk:0= |
207 |
+ >=sci-libs/hdf5-1.10.2:=[fortran?,mpi?] |
208 |
+ mpi? ( virtual/mpi[fortran=] ) |
209 |
+ python? ( ${PYTHON_DEPS} ) |
210 |
+" |
211 |
+DEPEND="${RDEPEND}" |
212 |
+BDEPEND="python? ( >=dev-lang/swig-3.0.8 )" |
213 |
+ |
214 |
+PATCHES=( |
215 |
+ "${FILESDIR}/${PN}-3.3.1-cmake-fortran.patch" |
216 |
+ "${FILESDIR}/${PN}-3.3.1-disable-python-compile.patch" # managed by function of python eclass |
217 |
+ "${FILESDIR}/${P}-cmakelist.patch" |
218 |
+ "${FILESDIR}/${P}-installdoc.patch" |
219 |
+) |
220 |
+ |
221 |
+DOCS=( AUTHORS ChangeLog NEWS README TODO ) |
222 |
+ |
223 |
+pkg_setup() { |
224 |
+ use python && python-single-r1_pkg_setup |
225 |
+ use fortran && fortran-2_pkg_setup |
226 |
+} |
227 |
+ |
228 |
+src_prepare() { |
229 |
+ if use python; then |
230 |
+ # fixes for correct libdir name |
231 |
+ local pysite=$(python_get_sitedir) |
232 |
+ pysite="${pysite##/usr/}" |
233 |
+ sed \ |
234 |
+ -e 's@SET(_install_dir lib/python${PYTHON_VERSION_MAJOR}.${PYTHON_VERSION_MINOR}/site-packages/med)@SET(_install_dir '${pysite}'/med)@' \ |
235 |
+ -i ./python/CMakeLists.txt || die "sed on ./python/CMakeLists.txt failed" |
236 |
+ fi |
237 |
+ for cm in ./src/CMakeLists.txt ./tools/medimport/CMakeLists.txt |
238 |
+ do |
239 |
+ sed -i -e "s@INSTALL(TARGETS \(.*\) DESTINATION lib)@INSTALL(TARGETS \1 DESTINATION $(get_libdir))@" \ |
240 |
+ "${cm}" || die "sed on ${cm} failed" |
241 |
+ done |
242 |
+ |
243 |
+ cmake-utils_src_prepare |
244 |
+} |
245 |
+ |
246 |
+src_configure() { |
247 |
+ local mycmakeargs=( |
248 |
+ # as indicated in the CMakeLists.txt, the shipped documentation is generated by a custom doxygen, |
249 |
+ # so let's avoid rebuilding it because it will be different |
250 |
+ -DMEDFILE_BUILD_DOC=OFF |
251 |
+ -DMEDFILE_BUILD_FORTRAN=$(usex fortran) |
252 |
+ -DMEDFILE_BUILD_PYTHON=$(usex python) |
253 |
+ -DMEDFILE_BUILD_SHARED_LIBS=ON |
254 |
+ -DMEDFILE_BUILD_STATIC_LIBS=OFF |
255 |
+ -DMEDFILE_BUILD_TESTS=$(usex test) |
256 |
+ -DMEDFILE_DOC_DIRECTORY="${EPREFIX}"/usr/share/doc/${PF}/html # custom var created by patches |
257 |
+ -DMEDFILE_INSTALL_DOC=$(usex doc) |
258 |
+ -DMEDFILE_USE_MPI=$(usex mpi) |
259 |
+ ) |
260 |
+ cmake-utils_src_configure |
261 |
+} |
262 |
+ |
263 |
+src_install() { |
264 |
+ cmake-utils_src_install |
265 |
+ |
266 |
+ # we don't need old 2.3.6 include files |
267 |
+ rm -r "${ED}"/usr/include/2.3.6 || die "failed to delete obsolete include dir" |
268 |
+ |
269 |
+ # the optimization done in CMakeLists.txt has been disabled so |
270 |
+ # we need to do it manually |
271 |
+ use python && python_optimize |
272 |
+ |
273 |
+ # Prevent test executables being installed |
274 |
+ if use test; then |
275 |
+ rm -r "${ED}"/usr/bin/testc || die "failed to delete C test executables" |
276 |
+ if use fortran; then |
277 |
+ rm -r "${ED}"/usr/bin/testf || die "failed to delete fortran test executables" |
278 |
+ fi |
279 |
+ if use python; then |
280 |
+ rm -r "${ED}"/usr/bin/testpy || die "failed to delete python test executables" |
281 |
+ fi |
282 |
+ fi |
283 |
+} |
284 |
+ |
285 |
+src_test() { |
286 |
+ # override parallel mode only for tests |
287 |
+ local myctestargs=( "-j 1" ) |
288 |
+ cmake-utils_src_test |
289 |
+} |