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commit: 299f323d9a54d449992ea9156fc0004d15cf934b |
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Author: Horea Christian <chr <AT> chymera <DOT> eu> |
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AuthorDate: Wed Nov 2 21:09:45 2022 +0000 |
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Commit: Horea Christian <horea.christ <AT> gmail <DOT> com> |
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CommitDate: Wed Nov 2 21:09:45 2022 +0000 |
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URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=299f323d |
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|
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dev-python/pynwb: add 2.2.0 |
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|
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Signed-off-by: Horea Christian <chr <AT> chymera.eu> |
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|
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dev-python/pynwb/files/pynwb-2.2.0-versions.patch | 21 +++++++++ |
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dev-python/pynwb/pynwb-2.2.0.ebuild | 57 +++++++++++++++++++++++ |
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2 files changed, 78 insertions(+) |
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|
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diff --git a/dev-python/pynwb/files/pynwb-2.2.0-versions.patch b/dev-python/pynwb/files/pynwb-2.2.0-versions.patch |
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new file mode 100644 |
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index 000000000..6141f629a |
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--- /dev/null |
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+++ b/dev-python/pynwb/files/pynwb-2.2.0-versions.patch |
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@@ -0,0 +1,21 @@ |
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+diff --git a/setup.py b/tmp/setup.py |
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+index 39e75824..f7948f64 100755 |
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+--- a/setup.py |
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++++ b/setup.py |
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+@@ -19,11 +19,11 @@ print('found these packages:', pkgs) |
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+ schema_dir = 'nwb-schema/core' |
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+ |
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+ reqs = [ |
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+- 'h5py>=2.10,<4', |
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+- 'hdmf>=3.4.2,<4', |
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+- 'numpy>=1.16,<1.24', |
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+- 'pandas>=1.1.5,<2', |
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+- 'python-dateutil>=2.7.3,<3', |
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++ 'h5py', |
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++ 'hdmf', |
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++ 'numpy', |
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++ 'pandas', |
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++ 'python-dateutil', |
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+ 'setuptools' |
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+ ] |
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+ |
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|
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diff --git a/dev-python/pynwb/pynwb-2.2.0.ebuild b/dev-python/pynwb/pynwb-2.2.0.ebuild |
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new file mode 100644 |
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index 000000000..6ea595a8f |
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--- /dev/null |
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+++ b/dev-python/pynwb/pynwb-2.2.0.ebuild |
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@@ -0,0 +1,57 @@ |
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+# Copyright 1999-2022 Gentoo Authors |
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+# Distributed under the terms of the GNU General Public License v2 |
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+ |
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+EAPI=8 |
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+ |
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+DISTUTILS_USE_PEP517=setuptools |
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+PYTHON_COMPAT=( python3_{8..10} ) |
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+inherit distutils-r1 |
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+ |
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+DESCRIPTION="A Python API for working with Neurodata stored in the NWB Format " |
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+HOMEPAGE="https://github.com/NeurodataWithoutBorders/pynwb" |
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+SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz" |
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+ |
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+SLOT="0" |
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+LICENSE="BSD" |
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+KEYWORDS="~amd64 ~x86" |
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+ |
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+RDEPEND=" |
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+ sci-libs/hdf5[ros3(-)] |
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+ >=dev-python/hdmf-3.3.2[${PYTHON_USEDEP}] |
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+ dev-python/h5py[${PYTHON_USEDEP}] |
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+ dev-python/numpy[${PYTHON_USEDEP}] |
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+ dev-python/pandas[${PYTHON_USEDEP}] |
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+ dev-python/python-dateutil[${PYTHON_USEDEP}] |
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+ " |
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+BDEPEND="" |
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+ |
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+PATCHES=( |
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+ "${FILESDIR}/${P}-versions.patch" |
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+ ) |
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+ |
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+EPYTEST_DESELECT=( |
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+ # Reported upsream: |
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+ # https://github.com/NeurodataWithoutBorders/pynwb/issues/1580 |
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+ tests/back_compat/test_read.py::TestReadOldVersions::test_read |
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+ tests/back_compat/test_read.py::TestReadOldVersions::test_read_imageseries_non_external_format |
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+ tests/back_compat/test_read.py::TestReadOldVersions::test_read_imageseries_nonmatch_starting_frame |
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+ tests/unit/test_image.py::ImageSeriesConstructor::test_external_file_with_data |
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+ tests/unit/test_image.py::ImageSeriesConstructor::test_external_file_with_data_construct_mode |
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+ tests/unit/test_image.py::ImageSeriesConstructor::test_external_file_with_incorrect_format |
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+ tests/unit/test_image.py::ImageSeriesConstructor::test_external_file_with_incorrect_format_construct_mode |
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+ tests/unit/test_image.py::ImageSeriesConstructor::test_external_file_with_incorrect_starting_frame |
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+ tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached |
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+ tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_bad_ns |
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+ tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_core |
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+ tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_extension |
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+ tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_extension_pass_ns |
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+ tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_hdmf_common |
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+ tests/validation/test_validate.py::TestValidateCLI::test_validate_file_cached_ignore |
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+ tests/validation/test_validate.py::TestValidateCLI::test_validate_file_invalid |
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+ tests/validation/test_validate.py::TestValidateCLI::test_validate_file_list_namespaces_core |
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+ tests/validation/test_validate.py::TestValidateCLI::test_validate_file_list_namespaces_extension |
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+ tests/validation/test_validate.py::TestValidateCLI::test_validate_file_no_cache |
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+ tests/validation/test_validate.py::TestValidateCLI::test_validate_file_no_cache_bad_ns |
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+) |
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+ |
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+distutils_enable_tests pytest |
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