[gentoo-commits] gentoo-x86 commit in sci-biology/vcftools: vcftools-0.1.7.ebuild ChangeLog vcftools-0.1.6.ebuild

[Andrey Kislyuk (weaver)]

weaver      12/01/02 21:51:52

  Modified:             ChangeLog
  Added:                vcftools-0.1.7.ebuild
  Removed:              vcftools-0.1.6.ebuild
  Log:
  Version bump
  
  (Portage version: 2.2.0_alpha74/cvs/Linux x86_64)

Revision  Changes    Path
1.3                  sci-biology/vcftools/ChangeLog

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/vcftools/ChangeLog?rev=1.3&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/vcftools/ChangeLog?rev=1.3&content-type=text/plain
diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/vcftools/ChangeLog?r1=1.2&r2=1.3

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/vcftools/ChangeLog,v
retrieving revision 1.2
retrieving revision 1.3
diff -u -r1.2 -r1.3
--- ChangeLog	8 Oct 2011 22:36:00 -0000	1.2
+++ ChangeLog	2 Jan 2012 21:51:52 -0000	1.3
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/vcftools
-# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/vcftools/ChangeLog,v 1.2 2011/10/08 22:36:00 weaver Exp $
+# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/vcftools/ChangeLog,v 1.3 2012/01/02 21:51:52 weaver Exp $
+
+*vcftools-0.1.7 (02 Jan 2012)
+
+  02 Jan 2012; Andrey Kislyuk <weaver@g.o> -vcftools-0.1.6.ebuild,
+  +vcftools-0.1.7.ebuild:
+  Version bump
 
   08 Oct 2011; Andrey Kislyuk <weaver@g.o> vcftools-0.1.6.ebuild:
   patch vcftools to set perl libdir properly



1.1                  sci-biology/vcftools/vcftools-0.1.7.ebuild

file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/vcftools/vcftools-0.1.7.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/vcftools/vcftools-0.1.7.ebuild?rev=1.1&content-type=text/plain

Index: vcftools-0.1.7.ebuild
===================================================================
# Copyright 1999-2012 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/vcftools/vcftools-0.1.7.ebuild,v 1.1 2012/01/02 21:51:52 weaver Exp $

EAPI=4

MY_P="${PN}_${PV}"

DESCRIPTION="Tools for working with VCF (Variant Call Format) files"
HOMEPAGE="http://vcftools.sourceforge.net/"
SRC_URI="mirror://sourceforge/${PN}/${MY_P}.tar.gz"

LICENSE="GPL-3"
SLOT="0"
KEYWORDS="~x86 ~amd64"
IUSE=""

S="${WORKDIR}/${MY_P}"

src_prepare() {
	sed -i -e "s/CPPFLAGS =/CPPFLAGS = $CXXFLAGS /" \
		-e "s/LIB =/LIB = $LDFLAGS /" cpp/Makefile || die
}

src_install(){
	dobin bin/*
	insinto /usr/share/${PN}/perl
	doins perl/*.pm
	exeinto /usr/share/${PN}/perl
	doexe perl/{fill,vcf}-*
	echo 'COLON_SEPARATED=PERL5LIB' > "${S}/99${PN}"
	echo "PERL5LIB=/usr/share/${PN}/perl" >> "${S}/99${PN}"
	doenvd "${S}/99${PN}"
	dodoc README.txt
}