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commit: cf04df0e7dad1b7779e01e24071a3c3600e2cebf |
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Author: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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AuthorDate: Fri Mar 23 00:22:22 2018 +0000 |
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Commit: Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz> |
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CommitDate: Fri Mar 23 00:22:22 2018 +0000 |
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URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=cf04df0e |
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sci-biology/augustus: respect EPREFIX and enable comparative gene prediction |
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Package-Manager: Portage-2.3.24, Repoman-2.3.6 |
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sci-biology/augustus/augustus-3.3.ebuild | 4 ++++ |
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1 file changed, 4 insertions(+) |
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diff --git a/sci-biology/augustus/augustus-3.3.ebuild b/sci-biology/augustus/augustus-3.3.ebuild |
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index 08d0687ab..b050f1da2 100644 |
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--- a/sci-biology/augustus/augustus-3.3.ebuild |
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+++ b/sci-biology/augustus/augustus-3.3.ebuild |
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@@ -30,6 +30,10 @@ src_prepare() { |
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# epatch "${FILESDIR}"/${P}-sane-build.patch |
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tc-export CC CXX |
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sed -e 's/ -O3//g' -i src/Makefile || die |
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+ # enable comparative gene prediction (needs c++11 compiler) |
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+ sed -e 's/^# COMPGENEPRED/COMPGENEPRED/' -i common.mk || die |
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+ # respect $EPREFIX |
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+ sed -e 's#^INCLUDES = /usr/include/bamtools#INCLUDES = ${EPREFIX}/usr/include/bamtools#' -i auxprogs/bam2hints/Makefile || die |
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} |
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src_compile() { |
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