[gentoo-commits] gentoo-x86 commit in sci-biology/raxml: ChangeLog raxml-7.2.5.ebuild raxml-7.0.4.ebuild

[Andrey Kislyuk (weaver)]

weaver      10/01/27 15:58:34

  Modified:             ChangeLog
  Added:                raxml-7.2.5.ebuild
  Removed:              raxml-7.0.4.ebuild
  Log:
  Version bump
  (Portage version: 2.2_rc30/cvs/Linux x86_64)

Revision  Changes    Path
1.5                  sci-biology/raxml/ChangeLog

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/raxml/ChangeLog?rev=1.5&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/raxml/ChangeLog?rev=1.5&content-type=text/plain
diff : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/raxml/ChangeLog?r1=1.4&r2=1.5

Index: ChangeLog
===================================================================
RCS file: /var/cvsroot/gentoo-x86/sci-biology/raxml/ChangeLog,v
retrieving revision 1.4
retrieving revision 1.5
diff -u -r1.4 -r1.5
--- ChangeLog	31 Oct 2009 17:56:05 -0000	1.4
+++ ChangeLog	27 Jan 2010 15:58:33 -0000	1.5
@@ -1,6 +1,12 @@
 # ChangeLog for sci-biology/raxml
-# Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2
-# $Header: /var/cvsroot/gentoo-x86/sci-biology/raxml/ChangeLog,v 1.4 2009/10/31 17:56:05 maekke Exp $
+# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2
+# $Header: /var/cvsroot/gentoo-x86/sci-biology/raxml/ChangeLog,v 1.5 2010/01/27 15:58:33 weaver Exp $
+
+*raxml-7.2.5 (27 Jan 2010)
+
+  27 Jan 2010; Andrey Kislyuk <weaver@g.o> -raxml-7.0.4.ebuild,
+  +raxml-7.2.5.ebuild:
+  Version bump
 
   31 Oct 2009; Markus Meier <maekke@g.o> raxml-7.2.2.ebuild:
   amd64/x86 stable, bug #290929



1.1                  sci-biology/raxml/raxml-7.2.5.ebuild

file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/raxml/raxml-7.2.5.ebuild?rev=1.1&view=markup
plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/raxml/raxml-7.2.5.ebuild?rev=1.1&content-type=text/plain

Index: raxml-7.2.5.ebuild
===================================================================
# Copyright 1999-2010 Gentoo Foundation
# Distributed under the terms of the GNU General Public License v2
# $Header: /var/cvsroot/gentoo-x86/sci-biology/raxml/raxml-7.2.5.ebuild,v 1.1 2010/01/27 15:58:33 weaver Exp $

EAPI="2"

inherit toolchain-funcs

DESCRIPTION="A Program for Sequential, Parallel & Distributed Inference of Large Phylogenetic Trees"
HOMEPAGE="http://wwwkramer.in.tum.de/exelixis/software.html"
SRC_URI="http://wwwkramer.in.tum.de/exelixis/software/RAxML-${PV}.tar.bz2"

LICENSE="GPL-2"
SLOT="0"
IUSE="+threads"
KEYWORDS="~amd64 ~x86"

# mpi is not supported in version 7.2.2. mpi is enabled by adding -DPARALLEL to CFLAGS
DEPEND="" # mpi? ( virtual/mpi )"
RDEPEND="${DEPEND}"

S="${WORKDIR}/RAxML-${PV}"

src_prepare() {
	sed -i -e 's/CFLAGS =/CFLAGS := ${CFLAGS}/' \
		-e 's/CC = gcc/CC = '$(tc-getCC)'/' \
		Makefile.* || die
}

src_compile() {
	emake -f Makefile.gcc || die
	emake -f Makefile.SSE3.gcc clean && emake -f Makefile.SSE3.gcc || die
	if use threads; then
		emake -f Makefile.PTHREADS.gcc clean && emake -f Makefile.PTHREADS.gcc || die
		emake -f Makefile.SSE3.PTHREADS.gcc clean && emake -f Makefile.SSE3.PTHREADS.gcc || die
	fi
}

src_install() {
	dobin raxmlHPC raxmlHPC-SSE3 || die
	if use threads; then dobin raxmlHPC-PTHREADS raxmlHPC-PTHREADS-SSE3 || die; fi
}