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From: "Justin Lecher (jlec)" <jlec@g.o>
To: gentoo-commits@l.g.o
Subject: [gentoo-commits] gentoo-x86 commit in sci-chemistry/pymol: ChangeLog pymol-1.5.0.3-r2.ebuild
Date: Wed, 30 Jan 2013 08:51:26
Message-Id: 20130130085120.CECEE2171D@flycatcher.gentoo.org
1 jlec 13/01/30 08:51:20
2
3 Modified: ChangeLog
4 Added: pymol-1.5.0.3-r2.ebuild
5 Log:
6 sci-chemistry/pymol: Move to new python eclasses, #453572
7
8 (Portage version: 2.2.0_alpha161/cvs/Linux x86_64, RepoMan options: --force, signed Manifest commit with key 70EB7916)
9
10 Revision Changes Path
11 1.98 sci-chemistry/pymol/ChangeLog
12
13 file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pymol/ChangeLog?rev=1.98&view=markup
14 plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pymol/ChangeLog?rev=1.98&content-type=text/plain
15 diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pymol/ChangeLog?r1=1.97&r2=1.98
16
17 Index: ChangeLog
18 ===================================================================
19 RCS file: /var/cvsroot/gentoo-x86/sci-chemistry/pymol/ChangeLog,v
20 retrieving revision 1.97
21 retrieving revision 1.98
22 diff -u -r1.97 -r1.98
23 --- ChangeLog 22 Jan 2013 19:10:13 -0000 1.97
24 +++ ChangeLog 30 Jan 2013 08:51:20 -0000 1.98
25 @@ -1,6 +1,11 @@
26 # ChangeLog for sci-chemistry/pymol
27 # Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
28 -# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol/ChangeLog,v 1.97 2013/01/22 19:10:13 jlec Exp $
29 +# $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol/ChangeLog,v 1.98 2013/01/30 08:51:20 jlec Exp $
30 +
31 +*pymol-1.5.0.3-r2 (30 Jan 2013)
32 +
33 + 30 Jan 2013; Justin Lecher <jlec@g.o> +pymol-1.5.0.3-r2.ebuild:
34 + Move to new python eclasses, #453572
35
36 22 Jan 2013; Justin Lecher <jlec@g.o> pymol-1.5.0.3-r1.ebuild,
37 metadata.xml:
38
39
40
41 1.1 sci-chemistry/pymol/pymol-1.5.0.3-r2.ebuild
42
43 file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pymol/pymol-1.5.0.3-r2.ebuild?rev=1.1&view=markup
44 plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-chemistry/pymol/pymol-1.5.0.3-r2.ebuild?rev=1.1&content-type=text/plain
45
46 Index: pymol-1.5.0.3-r2.ebuild
47 ===================================================================
48 # Copyright 1999-2013 Gentoo Foundation
49 # Distributed under the terms of the GNU General Public License v2
50 # $Header: /var/cvsroot/gentoo-x86/sci-chemistry/pymol/pymol-1.5.0.3-r2.ebuild,v 1.1 2013/01/30 08:51:20 jlec Exp $
51
52 EAPI=5
53
54 PYTHON_COMPAT=( python2_7 )
55 PYTHON_REQ_USE="tk"
56
57 inherit distutils-r1 fdo-mime prefix versionator
58
59 DESCRIPTION="A Python-extensible molecular graphics system"
60 HOMEPAGE="http://pymol.sourceforge.net/"
61 SRC_URI="
62 http://dev.gentoo.org/~jlec/distfiles/${P}.tar.xz
63 http://dev.gentoo.org/~jlec/distfiles/${PN}-icons.tar.xz"
64
65 LICENSE="PSF-2.2"
66 SLOT="0"
67 KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux ~x64-macos ~x86-macos"
68 IUSE="apbs numpy vmd web"
69
70 DEPEND="
71 dev-python/numpy
72 dev-python/pmw[${PYTHON_USEDEP}]
73 media-libs/freetype:2
74 media-libs/glew
75 media-libs/libpng
76 media-video/mpeg-tools
77 sys-libs/zlib
78 media-libs/freeglut
79 apbs? (
80 dev-libs/maloc
81 sci-chemistry/apbs
82 sci-chemistry/pdb2pqr
83 sci-chemistry/pymol-apbs-plugin
84 )
85 web? ( !dev-python/webpy )"
86 RDEPEND="${DEPEND}"
87
88 python_prepare_all() {
89 local PATCHES=(
90 "${FILESDIR}"/${PN}-1.5.0.1-setup.py.patch
91 "${FILESDIR}"/${PN}-1.5.0.1-data-path.patch
92 "${FILESDIR}"/${PN}-1.5.0.1-flags.patch
93 "${FILESDIR}"/${P}-prefix.patch
94 )
95
96 use web || PATCHES+=( "${FILESDIR}"/${P}-web.patch )
97 use vmd && PATCHES+=( "${FILESDIR}"/${PN}-1.5.0.1-vmd.patch )
98
99 if use numpy; then
100 sed \
101 -e '/PYMOL_NUMPY/s:^#::g' \
102 -i setup.py || die
103 fi
104
105 rm ./modules/pmg_tk/startup/apbs_tools.py || die
106
107 python_export python2_7 EPYTHON PYTHON_SITEDIR
108 echo "site_packages = \'$(python_get_sitedir)\'" > setup3.py || die
109
110 sed \
111 -e "s:/opt/local:${EPREFIX}/usr:g" \
112 -e '/ext_comp_args/s:\[.*\]:[]:g' \
113 -i setup.py || die
114
115 distutils-r1_python_prepare_all
116
117 eprefixify setup.py
118 }
119
120 python_install_all() {
121 distutils-r1_python_install_all
122
123 python_export python2_7 EPYTHON
124
125 # These environment variables should not go in the wrapper script, or else
126 # it will be impossible to use the PyMOL libraries from Python.
127 cat >> "${T}"/20pymol <<- EOF
128 PYMOL_PATH="${EPREFIX}/$(python_get_sitedir)/${PN}"
129 PYMOL_DATA="${EPREFIX}/usr/share/pymol/data"
130 PYMOL_SCRIPTS="${EPREFIX}/usr/share/pymol/scripts"
131 EOF
132
133 doenvd "${T}"/20pymol
134
135 cat >> "${T}"/pymol <<- EOF
136 #!/bin/sh
137 ${EPYTHON} -O \${PYMOL_PATH}/__init__.py -q \$*
138 EOF
139
140 dobin "${T}"/pymol
141
142 insinto /usr/share/pymol
143 doins -r test data scripts
144
145 insinto /usr/share/pymol/examples
146 doins -r examples
147
148 dodoc DEVELOPERS README
149
150 doicon "${WORKDIR}"/${PN}.{xpm,png}
151 make_desktop_entry pymol PyMol ${PN} "Graphics;Education;Science;Chemistry" "MimeType=chemical/x-pdb;"
152 }
153
154 pkg_postinst() {
155 elog "\t USE=shaders was removed,"
156 elog "please use pymol config settings (~/.pymolrc)"
157 elog "\t set use_shaders, 1"
158 elog "in case of crashes, please deactivate this experimental feature by setting"
159 elog "\t set use_shaders, 0"
160 elog "\t set sphere_mode, 0"
161 fdo-mime_desktop_database_update
162 fdo-mime_mime_database_update
163 }
164
165 pkg_postrm() {
166 fdo-mime_desktop_database_update
167 fdo-mime_mime_database_update
168 }
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