1 |
commit: 739bbba2330bc2891ca90633e1fc70d56a08eece |
2 |
Author: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org> |
3 |
AuthorDate: Fri Mar 17 12:19:12 2023 +0000 |
4 |
Commit: Andrew Ammerlaan <andrewammerlaan <AT> gentoo <DOT> org> |
5 |
CommitDate: Fri Mar 17 13:34:46 2023 +0000 |
6 |
URL: https://gitweb.gentoo.org/proj/sci.git/commit/?id=739bbba2 |
7 |
|
8 |
Revert "dev-python/snakemake: treeclean" |
9 |
|
10 |
This reverts commit f853476e85be13cb1ac9f36e8fbb25ca5e12c464. |
11 |
|
12 |
Signed-off-by: Andrew Ammerlaan <andrewammerlaan <AT> gentoo.org> |
13 |
|
14 |
dev-python/snakemake/metadata.xml | 13 +++++++ |
15 |
dev-python/snakemake/snakemake-5.32.2.ebuild | 56 ++++++++++++++++++++++++++++ |
16 |
2 files changed, 69 insertions(+) |
17 |
|
18 |
diff --git a/dev-python/snakemake/metadata.xml b/dev-python/snakemake/metadata.xml |
19 |
new file mode 100644 |
20 |
index 000000000..d9550c50f |
21 |
--- /dev/null |
22 |
+++ b/dev-python/snakemake/metadata.xml |
23 |
@@ -0,0 +1,13 @@ |
24 |
+<?xml version="1.0" encoding="UTF-8"?> |
25 |
+<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
26 |
+<pkgmetadata> |
27 |
+ <maintainer type="person"> |
28 |
+ <email>mschu.dev@×××××.com</email> |
29 |
+ <name>Michael Schubert</name> |
30 |
+ </maintainer> |
31 |
+ <upstream> |
32 |
+ <remote-id type="bitbucket">johanneskoester/snakemake</remote-id> |
33 |
+ <remote-id type="pypi">snakemake</remote-id> |
34 |
+ <remote-id type="github">snakemake/snakemake</remote-id> |
35 |
+ </upstream> |
36 |
+</pkgmetadata> |
37 |
|
38 |
diff --git a/dev-python/snakemake/snakemake-5.32.2.ebuild b/dev-python/snakemake/snakemake-5.32.2.ebuild |
39 |
new file mode 100644 |
40 |
index 000000000..59d2f061a |
41 |
--- /dev/null |
42 |
+++ b/dev-python/snakemake/snakemake-5.32.2.ebuild |
43 |
@@ -0,0 +1,56 @@ |
44 |
+# Copyright 1999-2022 Gentoo Authors |
45 |
+# Distributed under the terms of the GNU General Public License v2 |
46 |
+ |
47 |
+EAPI=7 |
48 |
+ |
49 |
+PYTHON_COMPAT=( python3_{8..9} ) |
50 |
+DISTUTILS_USE_SETUPTOOLS=rdepend |
51 |
+ |
52 |
+inherit distutils-r1 |
53 |
+ |
54 |
+DESCRIPTION="Make-like task language" |
55 |
+HOMEPAGE="https://snakemake.readthedocs.io" |
56 |
+SRC_URI="https://github.com/${PN}/${PN}/archive/v${PV}.tar.gz -> ${P}.tar.gz" |
57 |
+ |
58 |
+LICENSE="MIT" |
59 |
+SLOT="0" |
60 |
+KEYWORDS="~amd64 ~x86" |
61 |
+ |
62 |
+# missing test dep google.cloud |
63 |
+RESTRICT="test" |
64 |
+ |
65 |
+BDEPEND="test? ( |
66 |
+ dev-python/requests-mock[${PYTHON_USEDEP}] |
67 |
+ dev-python/google-api-python-client[${PYTHON_USEDEP}] |
68 |
+ dev-python/jinja[${PYTHON_USEDEP}] |
69 |
+ dev-python/networkx[${PYTHON_USEDEP}] |
70 |
+ dev-python/pygments[${PYTHON_USEDEP}] |
71 |
+ dev-python/pygraphviz[${PYTHON_USEDEP}] |
72 |
+ dev-python/oauth2client[${PYTHON_USEDEP}] |
73 |
+ net-libs/google-cloud-cpp |
74 |
+)" |
75 |
+ |
76 |
+RDEPEND=" |
77 |
+ dev-python/appdirs[${PYTHON_USEDEP}] |
78 |
+ dev-python/ConfigArgParse[${PYTHON_USEDEP}] |
79 |
+ dev-python/datrie[${PYTHON_USEDEP}] |
80 |
+ dev-python/docutils[${PYTHON_USEDEP}] |
81 |
+ dev-python/GitPython[${PYTHON_USEDEP}] |
82 |
+ dev-python/jsonschema[${PYTHON_USEDEP}] |
83 |
+ dev-python/nbformat[${PYTHON_USEDEP}] |
84 |
+ dev-python/psutil[${PYTHON_USEDEP}] |
85 |
+ dev-python/pyyaml[${PYTHON_USEDEP}] |
86 |
+ dev-python/ratelimit[${PYTHON_USEDEP}] |
87 |
+ dev-python/requests[${PYTHON_USEDEP}] |
88 |
+ dev-python/toposort[${PYTHON_USEDEP}] |
89 |
+ dev-python/wrapt[${PYTHON_USEDEP}] |
90 |
+ sci-mathematics/pulp[${PYTHON_USEDEP}] |
91 |
+" |
92 |
+ |
93 |
+distutils_enable_sphinx docs \ |
94 |
+ dev-python/sphinxcontrib-napoleon \ |
95 |
+ dev-python/sphinx-argparse \ |
96 |
+ dev-python/sphinx_rtd_theme \ |
97 |
+ dev-python/docutils \ |
98 |
+ dev-python/recommonmark |
99 |
+distutils_enable_tests pytest |