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jlec 10/06/25 09:22:36 |
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|
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Modified: ChangeLog |
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Added: vienna-rna-1.8.4-r1.ebuild |
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Removed: vienna-rna-1.7.2.ebuild vienna-rna-1.8.3.ebuild |
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Log: |
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Install ELFs in correct place, #300012 |
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(Portage version: 2.2_rc67/cvs/Linux x86_64) |
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|
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Revision Changes Path |
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1.31 sci-biology/vienna-rna/ChangeLog |
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|
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/vienna-rna/ChangeLog?rev=1.31&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/vienna-rna/ChangeLog?rev=1.31&content-type=text/plain |
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diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/vienna-rna/ChangeLog?r1=1.30&r2=1.31 |
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|
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Index: ChangeLog |
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=================================================================== |
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RCS file: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/ChangeLog,v |
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retrieving revision 1.30 |
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retrieving revision 1.31 |
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diff -u -r1.30 -r1.31 |
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--- ChangeLog 3 Apr 2010 21:41:51 -0000 1.30 |
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+++ ChangeLog 25 Jun 2010 09:22:36 -0000 1.31 |
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@@ -1,6 +1,13 @@ |
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# ChangeLog for sci-biology/vienna-rna |
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# Copyright 1999-2010 Gentoo Foundation; Distributed under the GPL v2 |
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-# $Header: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/ChangeLog,v 1.30 2010/04/03 21:41:51 jlec Exp $ |
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+# $Header: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/ChangeLog,v 1.31 2010/06/25 09:22:36 jlec Exp $ |
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+ |
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+*vienna-rna-1.8.4-r1 (25 Jun 2010) |
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+ |
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+ 25 Jun 2010; Justin Lecher <jlec@g.o> -vienna-rna-1.7.2.ebuild, |
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+ -vienna-rna-1.8.3.ebuild, +vienna-rna-1.8.4-r1.ebuild, |
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+ +files/vienna-rna-1.8.4-bindir.patch: |
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+ Install ELFs in correct place, #300012 |
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|
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03 Apr 2010; Justin Lecher <jlec@g.o> vienna-rna-1.8.4.ebuild, |
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+files/vienna-rna-1.8.4-jobserver-fix.patch: |
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|
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1.1 sci-biology/vienna-rna/vienna-rna-1.8.4-r1.ebuild |
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/vienna-rna/vienna-rna-1.8.4-r1.ebuild?rev=1.1&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/vienna-rna/vienna-rna-1.8.4-r1.ebuild?rev=1.1&content-type=text/plain |
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|
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Index: vienna-rna-1.8.4-r1.ebuild |
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=================================================================== |
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# Copyright 1999-2010 Gentoo Foundation |
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# Distributed under the terms of the GNU General Public License v2 |
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# $Header: /var/cvsroot/gentoo-x86/sci-biology/vienna-rna/vienna-rna-1.8.4-r1.ebuild,v 1.1 2010/06/25 09:22:36 jlec Exp $ |
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EAPI="2" |
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|
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inherit toolchain-funcs multilib autotools perl-module |
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|
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DESCRIPTION="The Vienna RNA Package - RNA secondary structure prediction and comparison" |
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LICENSE="vienna-rna" |
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HOMEPAGE="http://www.tbi.univie.ac.at/~ivo/RNA" |
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SRC_URI="http://www.tbi.univie.ac.at/~ivo/RNA/ViennaRNA-${PV}.tar.gz" |
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|
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SLOT="0" |
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IUSE="" |
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KEYWORDS="~amd64 ~ppc ~x86" |
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|
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DEPEND="dev-lang/perl |
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media-libs/gd" |
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RDEPEND="${DEPEND}" |
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|
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S="${WORKDIR}/ViennaRNA-${PV}" |
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|
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PATCHES=( |
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"${FILESDIR}"/${PN}-1.6.5-c-fixes.patch |
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"${FILESDIR}"/${PN}-1.7.2-LDFLAGS.patch |
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"${FILESDIR}"/${PN}-1.8.3-gcc4.3.patch |
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"${FILESDIR}"/${PN}-1.8.3-disable-gd.patch |
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"${FILESDIR}"/${P}-jobserver-fix.patch |
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"${FILESDIR}"/${P}-bindir.patch |
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) |
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|
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src_prepare() { |
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base_src_prepare |
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sed -i 's/ getline/ v_getline/' Readseq/ureadseq.c || die |
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sed -i '1 i #include <cstdio>' RNAforester/src/rnafuncs.cpp || die |
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|
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eautoreconf |
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(cd RNAforester; eautoreconf) |
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} |
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|
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src_configure() { |
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econf --with-cluster || die "Configuration failed." |
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sed -e "s:LIBDIR = /usr/lib:LIBDIR = ${D}/usr/$(get_libdir):" \ |
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-e "s:INCDIR = /usr/include:INCDIR = ${D}/usr/include:" \ |
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-i RNAforester/g2-0.70/Makefile \ |
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|| die "Failed patching RNAForester build system." |
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sed -e "s:CC=cc:CC=$(tc-getCC):" -e "s:CFLAGS=:CFLAGS=${CFLAGS}:" \ |
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-i Readseq/Makefile || die "Failed patching readseq Makefile." |
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} |
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|
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src_compile() { |
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emake clean || die |
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emake || die "Compilation failed." |
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emake -C Readseq || die "Failed to compile readseq." |
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# TODO: Add (optional?) support for the NCBI toolkit. |
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} |
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|
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src_test() { |
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cd "${S}"/Perl && emake check || die "Perl tests failed" |
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cd "${S}"/Readseq && emake test || die "Readseq tests failed" |
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} |
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|
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src_install() { |
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make install DESTDIR="${D}" || die "Installation failed." |
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dodoc AUTHORS ChangeLog NEWS README THANKS \ |
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|| die "Failed to install documentation." |
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newbin Readseq/readseq readseq-vienna \ |
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|| die "Installing readseq failed." |
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dodoc Readseq/Readseq.help || die \ |
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"Readseq Documentation installation failed." |
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newdoc Readseq/Readme README.readseq && \ |
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newdoc Readseq/Formats Formats.readseq \ |
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|| die "Installing readseq Readme failed." |
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|
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# remove perlocal.pod to avoid file collisions (see #240358) |
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fixlocalpod || die "Failed to remove perlocal.pod" |
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} |
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