[gentoo-commits] proj/sci:master commit in: sci-biology/symap/

[Martin Mokrejs]

commit:     36a3d4107693d6146159efeb83e1f8024da0a6e6
Author:     Martin Mokrejš <mmokrejs <AT> gmail <DOT> com>
AuthorDate: Thu Aug 29 15:39:26 2013 +0000
Commit:     Martin Mokrejs <mmokrejs <AT> fold <DOT> natur <DOT> cuni <DOT> cz>
CommitDate: Thu Aug 29 15:39:26 2013 +0000
URL:        http://git.overlays.gentoo.org/gitweb/?p=proj/sci.git;a=commit;h=36a3d410

Not yet completed ebuild for a new package

---
 sci-biology/symap/ChangeLog        |  9 +++++++++
 sci-biology/symap/symap-4.0.ebuild | 31 +++++++++++++++++++++++++++++++
 2 files changed, 40 insertions(+)

diff --git a/sci-biology/symap/ChangeLog b/sci-biology/symap/ChangeLog
new file mode 100644
index 0000000..9677e2f
--- /dev/null
+++ b/sci-biology/symap/ChangeLog
@@ -0,0 +1,9 @@
+# ChangeLog for sci-biology/symap
+# Copyright 1999-2013 Gentoo Foundation; Distributed under the GPL v2
+# $Header: $
+
+*symap-4.0 (29 Aug 2013)
+
+  29 Aug 2013; Martin Mokrejs <mmokrejs@×××××××××××××××.cz> +symap-4.0.ebuild:
+  Not yet working.
+

diff --git a/sci-biology/symap/symap-4.0.ebuild b/sci-biology/symap/symap-4.0.ebuild
new file mode 100644
index 0000000..c7434a0
--- /dev/null
+++ b/sci-biology/symap/symap-4.0.ebuild
@@ -0,0 +1,31 @@
+# Copyright 1999-2013 Gentoo Foundation
+# Distributed under the terms of the GNU General Public License v2
+# $Header: $
+
+EAPI=4
+
+DESCRIPTION="Synteny Mapping and Analysis Program between chromosomes, contigs and physical maps"
+HOMEPAGE="http://www.agcol.arizona.edu/software/symap/"
+SRC_URI="symap_40.tar.gz"
+
+LICENSE="GPLv2-symap"
+SLOT="0"
+KEYWORDS=""
+#KEYWORDS="~x86 ~amd64"
+IUSE=""
+
+RESTRICT="fetch"
+
+pkg_nofetch() {
+        einfo "Please register and download symap_${PV}.tar.gz (110MB)"
+        einfo "at http://www.agcol.arizona.edu/software/symap/v"${PV}"/download/"
+        einfo 'and place it in '${DISTDIR}
+}
+
+
+DEPEND="sci-biology/blat
+	sci-biology/mummer
+	sci-biology/muscle"
+RDEPEND="${DEPEND}
+	dev-lang/java"
+