[gentoo-commits] repo/gentoo:master commit in: dev-python/spectral-cube/files/, dev-python/spectral-cube/

[Mikle Kolyada]

commit:     da8a8afb223fe7c8043a5fec0d7f32283917e3a2
Author:     Mikle Kolyada <zlogene <AT> gentoo <DOT> org>
AuthorDate: Sat Dec 28 16:41:32 2019 +0000
Commit:     Mikle Kolyada <zlogene <AT> gentoo <DOT> org>
CommitDate: Sat Dec 28 16:41:32 2019 +0000
URL:        https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=da8a8afb

dev-python/spectrial-cube: remove last-rited pkg

Signed-off-by: Mikle Kolyada <zlogene <AT> gentoo.org>

 dev-python/spectral-cube/Manifest                  |   1 -
 .../files/spectral-cube-0.4.0-looseversion.patch   | 139 ---------------------
 dev-python/spectral-cube/metadata.xml              |  19 ---
 .../spectral-cube/spectral-cube-0.4.0.ebuild       |  52 --------
 4 files changed, 211 deletions(-)

diff --git a/dev-python/spectral-cube/Manifest b/dev-python/spectral-cube/Manifest
deleted file mode 100644
index c0717432bc0..00000000000
--- a/dev-python/spectral-cube/Manifest
+++ /dev/null
@@ -1 +0,0 @@
-DIST spectral-cube-0.4.0.tar.gz 290453 BLAKE2B 3e41ca0e6d925e36269c638aabc9e4df70ac8abf9ac2a59c4425435bbcb2d0b9b1ec1140e47828d597665a0164dc7c0b88d929762ca5c7bf72b5b16aa31f97d1 SHA512 20970d1be0d836bd07ea96ee909300f28eaf2ab4ded7b4525eb68399d242b864fe93120a16ef2ef35eba5f547c0cbe90b07c27ef44ab1910dbbe97230fbab84e

diff --git a/dev-python/spectral-cube/files/spectral-cube-0.4.0-looseversion.patch b/dev-python/spectral-cube/files/spectral-cube-0.4.0-looseversion.patch
deleted file mode 100644
index 42147de559a..00000000000
--- a/dev-python/spectral-cube/files/spectral-cube-0.4.0-looseversion.patch
+++ /dev/null
@@ -1,139 +0,0 @@
-From: Ole Streicher <olebole@××××××.org>
-Date: Tue, 12 Jul 2016 08:54:59 +0200
-Subject: Use LooseVersion instead of StrictVersion.
-
-StrictVersion fails on numpy RCs. LooseVersion is a compromise until something better is available.
----
- spectral_cube/np_compat.py                |  4 ++--
- spectral_cube/spectral_cube.py            |  4 ++--
- spectral_cube/tests/test_masks.py         |  4 ++--
- spectral_cube/tests/test_moments.py       |  4 ++--
- spectral_cube/tests/test_spectral_cube.py | 10 +++++-----
- 5 files changed, 13 insertions(+), 13 deletions(-)
-
-diff --git a/spectral_cube/np_compat.py b/spectral_cube/np_compat.py
-index e72b4d9..dd9080a 100644
---- a/spectral_cube/np_compat.py
-+++ b/spectral_cube/np_compat.py
-@@ -1,7 +1,7 @@
- from __future__ import print_function, absolute_import, division
- 
- import numpy as np
--from distutils.version import StrictVersion
-+from distutils.version import LooseVersion
- 
- def allbadtonan(function):
-     """
-@@ -11,7 +11,7 @@ def allbadtonan(function):
-     """
-     def f(data, axis=None):
-         result = function(data, axis=axis)
--        if StrictVersion(np.__version__) >= StrictVersion('1.9.0'):
-+        if LooseVersion(np.__version__) >= LooseVersion('1.9.0'):
-             if axis is None:
-                 if np.all(np.isnan(data)):
-                     return np.nan
-diff --git a/spectral_cube/spectral_cube.py b/spectral_cube/spectral_cube.py
-index 231245d..fa61119 100644
---- a/spectral_cube/spectral_cube.py
-+++ b/spectral_cube/spectral_cube.py
-@@ -34,7 +34,7 @@ from .lower_dimensional_structures import (Projection, Slice, OneDSpectrum,
-                                            LowerDimensionalObject)
- from .base_class import BaseNDClass, SpectralAxisMixinClass, DOPPLER_CONVENTIONS
- 
--from distutils.version import StrictVersion
-+from distutils.version import LooseVersion
- 
- __all__ = ['SpectralCube', 'VaryingResolutionSpectralCube']
- 
-@@ -2072,7 +2072,7 @@ class BaseSpectralCube(BaseNDClass, SpectralAxisMixinClass):
-         import yt
- 
-         if ('dev' in yt.__version__ or
--            StrictVersion(yt.__version__) >= StrictVersion('3.0')):
-+            LooseVersion(yt.__version__) >= LooseVersion('3.0')):
- 
-             from yt.frontends.fits.api import FITSDataset
-             from yt.units.unit_object import UnitParseError
-diff --git a/spectral_cube/tests/test_masks.py b/spectral_cube/tests/test_masks.py
-index 9116cb3..42a2125 100644
---- a/spectral_cube/tests/test_masks.py
-+++ b/spectral_cube/tests/test_masks.py
-@@ -14,7 +14,7 @@ from .. import (BooleanArrayMask, SpectralCube, LazyMask, LazyComparisonMask,
-                 FunctionMask, CompositeMask)
- from ..masks import is_broadcastable_and_smaller, dims_to_skip, view_of_subset
- 
--from distutils.version import StrictVersion
-+from distutils.version import LooseVersion
- 
- 
- def test_spectral_cube_mask():
-@@ -370,7 +370,7 @@ def test_flat_mask():
-     assert np.all(cube.sum(axis=0)[mask_array] == mcube.sum(axis=0)[mask_array])
-     assert np.all(np.isnan(mcube.sum(axis=0)[~mask_array]))
- 
--@×××××××××××.skipif(StrictVersion(np.__version__) < StrictVersion('1.7'),
-+@×××××××××××.skipif(LooseVersion(np.__version__) < LooseVersion('1.7'),
-                     reason='Numpy <1.7 does not support multi-slice indexing.')
- def test_flat_mask_spectral():
-     cube, data = cube_and_raw('adv.fits')
-diff --git a/spectral_cube/tests/test_moments.py b/spectral_cube/tests/test_moments.py
-index 9b118fd..82eff40 100644
---- a/spectral_cube/tests/test_moments.py
-+++ b/spectral_cube/tests/test_moments.py
-@@ -1,7 +1,7 @@
- from __future__ import print_function, absolute_import, division
- 
- import warnings
--from distutils.version import StrictVersion
-+from distutils.version import LooseVersion
- 
- import pytest
- import numpy as np
-@@ -78,7 +78,7 @@ axis_order = pytest.mark.parametrize(('axis', 'order'),
-                                      (1, 0), (1, 1), (1, 2),
-                                      (2, 0), (2, 1), (2, 2)))
- 
--if StrictVersion(astropy.__version__[:3]) >= StrictVersion('1.0'):
-+if LooseVersion(astropy.__version__[:3]) >= LooseVersion('1.0'):
-     # The relative error is slightly larger on astropy-dev
-     # There is no obvious reason for this.
-     rtol = 2e-7
-diff --git a/spectral_cube/tests/test_spectral_cube.py b/spectral_cube/tests/test_spectral_cube.py
-index 025e6bd..4dce3bb 100644
---- a/spectral_cube/tests/test_spectral_cube.py
-+++ b/spectral_cube/tests/test_spectral_cube.py
-@@ -4,7 +4,7 @@ import operator
- import itertools
- import warnings
- import mmap
--from distutils.version import StrictVersion, LooseVersion
-+from distutils.version import LooseVersion, LooseVersion
- 
- # needed to test for warnings later
- warnings.simplefilter('always', UserWarning)
-@@ -468,12 +468,12 @@ class TestNumpyMethods(BaseTest):
-         scmed = self.c.apply_numpy_function(np.median, axis=0)
-         # this checks whether numpy <=1.9.3 has a bug?
-         # as far as I can tell, np==1.9.3 no longer has this bug/feature
--        #if StrictVersion(np.__version__) <= StrictVersion('1.9.3'):
-+        #if LooseVersion(np.__version__) <= LooseVersion('1.9.3'):
-         #    # print statements added so we get more info in the travis builds
--        #    print("Numpy version is: {0}".format(StrictVersion(np.__version__)))
-+        #    print("Numpy version is: {0}".format(LooseVersion(np.__version__)))
-         #    assert np.count_nonzero(np.isnan(scmed)) == 5
-         #else:
--        #    print("Numpy version is: {0}".format(StrictVersion(np.__version__)))
-+        #    print("Numpy version is: {0}".format(LooseVersion(np.__version__)))
-         assert np.count_nonzero(np.isnan(scmed)) == 6
- 
-         scmed = self.c.apply_numpy_function(np.nanmedian, axis=0)
-@@ -667,7 +667,7 @@ def test_read_write_rountrip(tmpdir):
-     assert cube.shape == cube.shape
-     assert_allclose(cube._data, cube2._data)
-     if (((hasattr(_wcs, '__version__')
--          and StrictVersion(_wcs.__version__) < StrictVersion('5.9'))
-+          and LooseVersion(_wcs.__version__) < LooseVersion('5.9'))
-          or not hasattr(_wcs, '__version__'))):
-         # see https://github.com/astropy/astropy/pull/3992 for reasons:
-         # we should upgrade this for 5.10 when the absolute accuracy is

diff --git a/dev-python/spectral-cube/metadata.xml b/dev-python/spectral-cube/metadata.xml
deleted file mode 100644
index 0cc45ca202a..00000000000
--- a/dev-python/spectral-cube/metadata.xml
+++ /dev/null
@@ -1,19 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
-<pkgmetadata>
-  <maintainer type="project">
-    <email>sci-astronomy@g.o</email>
-    <name>Gentoo Astronomy Project</name>
-  </maintainer>
-  <longdescription lang="en">
-    The spectral-cube astronomy python module provides an easy way to
-    read, manipulate, analyze, and write data cubes with two
-    positional dimensions and one spectral dimension, optionally with
-    Stokes parameters. It aims to be a versatile data container for
-    building custom analysis routines.
-  </longdescription>
-  <upstream>
-    <remote-id type="pypi">spectral-cube</remote-id>
-    <remote-id type="github">astropy/spectral-cube</remote-id>
-  </upstream>
-</pkgmetadata>

diff --git a/dev-python/spectral-cube/spectral-cube-0.4.0.ebuild b/dev-python/spectral-cube/spectral-cube-0.4.0.ebuild
deleted file mode 100644
index b5ae97f1c12..00000000000
--- a/dev-python/spectral-cube/spectral-cube-0.4.0.ebuild
+++ /dev/null
@@ -1,52 +0,0 @@
-# Copyright 1999-2019 Gentoo Authors
-# Distributed under the terms of the GNU General Public License v2
-
-EAPI=6
-
-PYTHON_COMPAT=( python3_{5,6} )
-inherit distutils-r1
-
-DESCRIPTION="Manipulate astronomical data cubes with Python"
-HOMEPAGE="https://spectral-cube.readthedocs.org/"
-SRC_URI="mirror://pypi/${PN:0:1}/${PN}/${P}.tar.gz"
-
-KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux"
-
-LICENSE="BSD"
-SLOT="0"
-IUSE="doc test"
-RESTRICT="!test? ( test )"
-
-RDEPEND="dev-python/astropy[${PYTHON_USEDEP}]"
-DEPEND="${RDEPEND}
-	dev-python/astropy-helpers[${PYTHON_USEDEP}]
-	dev-python/setuptools[${PYTHON_USEDEP}]
-	doc? ( dev-python/sphinx[${PYTHON_USEDEP}] )
-	test? ( dev-python/pytest[${PYTHON_USEDEP}] )"
-
-PATCHES=( "${FILESDIR}"/${P}-looseversion.patch )
-
-python_prepare_all() {
-	sed -i -e '/auto_use/s/True/False/' setup.cfg || die
-	distutils-r1_python_prepare_all
-}
-
-python_compile_all() {
-	if use doc; then
-		python_setup
-		PYTHONPATH="${BUILD_DIR}"/lib \
-				  esetup.py build_sphinx --no-intersphinx
-	fi
-}
-
-python_test() {
-	pushd spectral_cube/tests/data > /dev/null
-	"${PYTHON}" make_test_cubes.py
-	popd > /dev/null
-	esetup.py test
-}
-
-python_install_all() {
-	use doc && local HTML_DOCS=( docs/_build/html/ )
-	distutils-r1_python_install_all
-}