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| From: | "Andrey Kislyuk (weaver)" <weaver@g.o> |
|---|---|
| To: | gentoo-commits@l.g.o |
| Subject: | [gentoo-commits] gentoo-x86 commit in sci-biology/phred: phred-071220.ebuild ChangeLog metadata.xml |
| Date: | Fri, 27 Feb 2009 00:04:26 |
| Message-Id: | E1LcqDI-0001Ni-UK@stork.gentoo.org |
| 1 | weaver 09/02/27 00:04:24 |
| 2 | |
| 3 | Added: phred-071220.ebuild ChangeLog metadata.xml |
| 4 | Log: |
| 5 | Import from Science overlay, bug 253364 |
| 6 | (Portage version: 2.2_rc20/cvs/Linux 2.6.26-gentoo-r4 x86_64) |
| 7 | |
| 8 | Revision Changes Path |
| 9 | 1.1 sci-biology/phred/phred-071220.ebuild |
| 10 | |
| 11 | file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/phred/phred-071220.ebuild?rev=1.1&view=markup |
| 12 | plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/phred/phred-071220.ebuild?rev=1.1&content-type=text/plain |
| 13 | |
| 14 | Index: phred-071220.ebuild |
| 15 | =================================================================== |
| 16 | # Copyright 1999-2009 Gentoo Foundation |
| 17 | # Distributed under the terms of the GNU General Public License v2 |
| 18 | # $Header: /var/cvsroot/gentoo-x86/sci-biology/phred/phred-071220.ebuild,v 1.1 2009/02/27 00:04:24 weaver Exp $ |
| 19 | |
| 20 | DESCRIPTION="A base caller for Sanger DNA sequencing" |
| 21 | HOMEPAGE="http://phrap.org/phredphrapconsed.html" |
| 22 | SRC_URI="phred-dist-071220.b-acd.tar.gz" |
| 23 | |
| 24 | LICENSE="phrap" |
| 25 | SLOT="0" |
| 26 | KEYWORDS="~amd64 ~x86" |
| 27 | IUSE="" |
| 28 | |
| 29 | DEPEND="" |
| 30 | RDEPEND="" |
| 31 | |
| 32 | S="${WORKDIR}" |
| 33 | |
| 34 | RESTRICT="fetch" |
| 35 | |
| 36 | pkg_nofetch() { |
| 37 | einfo "Please visit ${HOMEPAGE} and obtain the file" |
| 38 | einfo "${SRC_URI}, then place it in ${DISTDIR}" |
| 39 | } |
| 40 | |
| 41 | src_compile() { |
| 42 | sed -i -e 's/CFLAGS=/CFLAGS += /' Makefile |
| 43 | emake daev || die |
| 44 | emake || die |
| 45 | } |
| 46 | |
| 47 | src_install() { |
| 48 | dobin phred daev || die |
| 49 | insinto /usr/share/${PN} |
| 50 | doins phredpar.dat || die |
| 51 | echo "PHRED_PARAMETER_FILE=/usr/share/${PN}/phredpar.dat" > 99phred |
| 52 | doenvd 99phred || die |
| 53 | newdoc DAEV.DOC DAEV.DOC.txt |
| 54 | newdoc PHRED.DOC PHRED.DOC.txt |
| 55 | } |
| 56 | |
| 57 | |
| 58 | |
| 59 | 1.1 sci-biology/phred/ChangeLog |
| 60 | |
| 61 | file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/phred/ChangeLog?rev=1.1&view=markup |
| 62 | plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/phred/ChangeLog?rev=1.1&content-type=text/plain |
| 63 | |
| 64 | Index: ChangeLog |
| 65 | =================================================================== |
| 66 | # ChangeLog for sci-biology/phred |
| 67 | # Copyright 1999-2009 Gentoo Foundation; Distributed under the GPL v2 |
| 68 | # $Header: /var/cvsroot/gentoo-x86/sci-biology/phred/ChangeLog,v 1.1 2009/02/27 00:04:24 weaver Exp $ |
| 69 | |
| 70 | *phred-071220 (26 Feb 2009) |
| 71 | |
| 72 | 26 Feb 2009; Andrey Kislyuk <weaver@g.o> +metadata.xml, |
| 73 | +phred-071220.ebuild: |
| 74 | Import from Science overlay |
| 75 | |
| 76 | 20 Feb 2009; weaver <weaver@g.o> ChangeLog: |
| 77 | New package, ebuild written by me, thanks to Martin Mokrejs |
| 78 | |
| 79 | |
| 80 | |
| 81 | |
| 82 | 1.1 sci-biology/phred/metadata.xml |
| 83 | |
| 84 | file : http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/phred/metadata.xml?rev=1.1&view=markup |
| 85 | plain: http://sources.gentoo.org/viewcvs.py/gentoo-x86/sci-biology/phred/metadata.xml?rev=1.1&content-type=text/plain |
| 86 | |
| 87 | Index: metadata.xml |
| 88 | =================================================================== |
| 89 | <?xml version="1.0" encoding="UTF-8"?> |
| 90 | <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd"> |
| 91 | <pkgmetadata> |
| 92 | <maintainer> |
| 93 | <email>weaver@g.o</email> |
| 94 | <name>Andrey Kislyuk</name> |
| 95 | </maintainer> |
| 96 | <herd>sci-biology</herd> |
| 97 | </pkgmetadata> |