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jlec 11/12/04 19:03:25 |
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|
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Modified: ChangeLog |
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Added: cctbx-2010.03.29.2334-r5.ebuild |
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Log: |
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Create soname symlink, streamelined find and delete of unwanted files |
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|
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(Portage version: 2.2.0_alpha79/cvs/Linux x86_64) |
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|
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Revision Changes Path |
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1.21 sci-libs/cctbx/ChangeLog |
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|
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-libs/cctbx/ChangeLog?rev=1.21&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-libs/cctbx/ChangeLog?rev=1.21&content-type=text/plain |
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diff : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-libs/cctbx/ChangeLog?r1=1.20&r2=1.21 |
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|
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Index: ChangeLog |
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=================================================================== |
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RCS file: /var/cvsroot/gentoo-x86/sci-libs/cctbx/ChangeLog,v |
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retrieving revision 1.20 |
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retrieving revision 1.21 |
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diff -u -r1.20 -r1.21 |
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--- ChangeLog 7 Oct 2011 09:52:42 -0000 1.20 |
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+++ ChangeLog 4 Dec 2011 19:03:25 -0000 1.21 |
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@@ -1,6 +1,12 @@ |
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# ChangeLog for sci-libs/cctbx |
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# Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2 |
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-# $Header: /var/cvsroot/gentoo-x86/sci-libs/cctbx/ChangeLog,v 1.20 2011/10/07 09:52:42 jlec Exp $ |
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+# $Header: /var/cvsroot/gentoo-x86/sci-libs/cctbx/ChangeLog,v 1.21 2011/12/04 19:03:25 jlec Exp $ |
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+ |
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+*cctbx-2010.03.29.2334-r5 (04 Dec 2011) |
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+ |
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+ 04 Dec 2011; Justin Lecher <jlec@g.o> |
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+ +cctbx-2010.03.29.2334-r5.ebuild: |
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+ Create soname symlink, streamelined find and delete of unwanted files |
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|
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07 Oct 2011; Justin Lecher <jlec@g.o> cctbx-2010.03.29.2334-r3.ebuild, |
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cctbx-2010.03.29.2334-r4.ebuild, metadata.xml: |
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|
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|
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|
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1.1 sci-libs/cctbx/cctbx-2010.03.29.2334-r5.ebuild |
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|
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file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-libs/cctbx/cctbx-2010.03.29.2334-r5.ebuild?rev=1.1&view=markup |
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plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-libs/cctbx/cctbx-2010.03.29.2334-r5.ebuild?rev=1.1&content-type=text/plain |
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|
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Index: cctbx-2010.03.29.2334-r5.ebuild |
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=================================================================== |
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# Copyright 1999-2011 Gentoo Foundation |
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# Distributed under the terms of the GNU General Public License v2 |
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# $Header: /var/cvsroot/gentoo-x86/sci-libs/cctbx/cctbx-2010.03.29.2334-r5.ebuild,v 1.1 2011/12/04 19:03:25 jlec Exp $ |
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|
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EAPI="3" |
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|
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PYTHON_DEPEND="2" |
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|
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inherit eutils fortran-2 prefix python toolchain-funcs |
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|
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MY_PV="${PV//./_}" |
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|
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DESCRIPTION="Computational Crystallography Toolbox" |
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HOMEPAGE="http://cctbx.sourceforge.net/" |
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SRC_URI="http://cci.lbl.gov/cctbx_build/results/${MY_PV}/${PN}_bundle.tar.gz -> ${P}.tar.gz" |
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|
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LICENSE="cctbx-2.0" |
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SLOT="0" |
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KEYWORDS="~amd64 ~ppc ~x86 ~amd64-linux ~x86-linux" |
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IUSE="+minimal openmp threads" |
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|
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RDEPEND=" |
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virtual/fortran |
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>dev-libs/boost-1.39[python] |
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sci-libs/clipper |
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sci-libs/fftw |
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!minimal? ( |
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sci-chemistry/cns |
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sci-chemistry/shelx )" |
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DEPEND="${RDEPEND} |
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>=dev-util/scons-1.2" |
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|
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S="${WORKDIR}" |
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MY_S="${WORKDIR}"/cctbx_sources |
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MY_B="${WORKDIR}"/cctbx_build |
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|
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pkg_setup() { |
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use openmp && FORTRAN_NEED_OPENMP="1" |
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fortran-2_pkg_setup |
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if use openmp && ! tc-has-openmp; then |
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ewarn "You are using gcc and OpenMP is only available with gcc >= 4.2 and icc" |
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ewarn "If you want to build ${PN} with OpenMP, abort now," |
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ewarn "and switch CC to an OpenMP capable compiler" |
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fi |
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python_set_active_version 2 |
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} |
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|
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src_prepare() { |
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local opts |
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local optsld |
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|
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epatch \ |
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"${FILESDIR}"/${PV}-tst_server.py.patch \ |
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"${FILESDIR}"/${PV}-boost.patch \ |
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"${FILESDIR}"/${PV}-clipper.patch \ |
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"${FILESDIR}"/${PV}-flags.patch \ |
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"${FILESDIR}"/${PV}-soname.patch \ |
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"${FILESDIR}"/${PV}-gcc-4.6.patch |
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|
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eprefixify "${MY_S}"/scitbx/libtbx_refresh.py |
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|
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rm -rf "${MY_S}/scons" "${MY_S}/boost" "${MY_S}/PyCifRW" || die |
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find "${MY_S}/clipper" -name "*.h" -delete || die |
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|
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echo "import os, sys; os.execvp('scons', sys.argv)" > "${MY_S}"/libtbx/command_line/scons.py |
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} |
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|
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src_configure() { |
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local compiler |
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local myconf |
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|
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myconf="${MY_S}/libtbx/configure.py" |
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|
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compiler=$(expr match "$(tc-getCC)" '.*\([a-z]cc\)') |
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myconf="${myconf} --compiler=${compiler}" |
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|
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# Additional USE flag usage |
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check_use openmp |
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myconf="${myconf} --enable-openmp-if-possible=${USE_openmp}" |
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|
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use threads && USEthreads="--enable-boost-threads" && \ |
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ewarn "If using boost threads openmp support is disabled" |
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|
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myconf="${myconf} ${USE_threads} --scan-boost --use_environment_flags" |
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|
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mkdir "${MY_B}" && myconf="${myconf} --current_working_directory=${MY_B}" |
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cd "${MY_B}" |
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|
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myconf="${myconf} --build=release fftw3tbx rstbx smtbx mmtbx clipper_adaptbx fable" |
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einfo "configuring with ${python} ${myconf}" |
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|
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$(PYTHON) ${myconf} || die "configure failed" |
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} |
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|
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src_compile() { |
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local makeopts_exp |
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|
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cd "${MY_B}" |
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|
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makeopts_exp=${MAKEOPTS/j/j } |
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makeopts_exp=${makeopts_exp%-l[0-9]*} |
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|
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source setpaths_all.sh |
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|
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einfo "compiling with libtbx.scons ${makeopts_exp}" |
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libtbx.scons ${makeopts_exp} .|| die "make failed" |
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} |
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|
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src_test(){ |
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source "${MY_B}"/setpaths_all.sh |
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libtbx.python $(libtbx.show_dist_paths boost_adaptbx)/tests/tst_rational.py && \ |
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libtbx.python ${SCITBX_DIST}/run_tests.py ${MAKEOPTS_EXP} && \ |
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libtbx.python ${CCTBX_DIST}/run_tests.py ${MAKEOPTS_EXP} \ |
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|| die "test failed" |
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} |
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|
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src_install(){ |
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local lib baselib |
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# find cctbx_build/ -type f \( -name "*.py" -o -name "*sh" \) -exec \ |
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# sed -e "s:${MY_S}:${EPREFIX}/usr/$(get_libdir)/cctbx/cctbx_sources:g" \ |
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# -e "s:${MY_B}:${EPREFIX}/usr/$(get_libdir)/cctbx/cctbx_build:g" \ |
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# -i '{}' \; || die "Fail to correct path" |
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|
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sed \ |
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-e "s:${MY_B}:${EPREFIX}/usr:g" \ |
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-e "s:${MY_S}:${EPREFIX}/$(python_get_sitedir):g" \ |
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-i "${MY_B}/libtbx_env" || die |
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|
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insinto /usr/share/cctbx |
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doins "${MY_B}/libtbx_env" || die |
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|
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ebegin "removing unnessary files" |
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rm -r "${S}"/cctbx_sources/{clipper,ccp4io,ucs-fonts,TAG} || die "failed to remove uneeded scons" |
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find -O3 "${S}" -type f \ |
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\( -name "*conftest*" -o -name "*.o" -o -name "*.c" -o -name "*.f" -o -name "*.cpp" -o \ |
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-name "*.pyc" -o -name "SCons*" -o -name "Makefile" -o -name "config.log" \) -delete || die |
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find "${S}" -type d -empty -delete || die |
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find "${MY_B}" -maxdepth 1 -type f -delete || die |
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eend |
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|
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dobin "${MY_B}"/bin/* || die |
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rm -rf "${MY_B}/bin" |
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dolib.so "${MY_B}"/lib/lib* || die |
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mv "${ED}"/usr/$(get_libdir)/libscitbx_min{,i}pack.so || die |
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rm -f "${MY_B}"/lib/lib* |
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|
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for lib in "${ED}"/usr/$(get_libdir)/*.so; do |
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baselib=$(basename ${lib}) |
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mv ${lib}{,.0.0} |
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dosym ${baselib}.0.0 /usr/$(get_libdir)/${baselib} |
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done |
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|
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insinto /usr/include |
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doins -r "${MY_B}"/include/* || die |
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rm -rf "${MY_B}/include" |
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|
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insinto /usr/libexec/${PN} |
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doins -r "${MY_B}"/* || die |
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find "${ED}"/usr/libexec/${PN} -type f -exec chmod 755 '{}' \; |
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|
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cd "${MY_S}" |
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insinto $(python_get_sitedir) |
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doins -r * || die |
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exeinto $(python_get_sitedir) |
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doexe "${MY_B}"/lib/* || die |
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rm -rf "${MY_B}/lib" |
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|
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sed \ |
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-e "/PYTHONPATH/s:${MY_S}:$(python_get_sitedir):g" \ |
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-e "/PYTHONPATH/s:${MY_B}:$(python_get_sitedir):g" \ |
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-e "/LD_LIBRARY_PATH/s:${MY_B}/lib:${EPREFIX}/usr/$(get_libdir):g" \ |
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-e "/PATH/s:${MY_B}/bin:${EPREFIX}/usr/bin:g" \ |
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-e "/PATH/s:${MY_B}/exe:${EPREFIX}/usr/bin:g" \ |
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-e "/exec/s:${MY_S}:$(python_get_sitedir):g" \ |
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-e "/LIBTBX_BUILD/s:${MY_B}:${EPREFIX}/usr/share/cctbx:g" \ |
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-e "s:${MY_B}/exe_dev/:${EPREFIX}/usr/libexec/${PN}/exe_dev/:g" \ |
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-i "${ED}"/usr/bin/* || die |
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|
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} |
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|
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pkg_postinst () { |
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python_mod_optimize boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx chiltbx clipper_adaptbx crys3d fable fftw3tbx gltbx iotbx libtbx mmtbx omptbx rstbx scitbx smtbx spotfinder tntbx |
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} |
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|
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pkg_postrm () { |
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python_mod_cleanup boost_adaptbx cbflib_adaptbx ccp4io_adaptbx cctbx chiltbx clipper_adaptbx crys3d fable fftw3tbx gltbx iotbx libtbx mmtbx omptbx rstbx scitbx smtbx spotfinder tntbx |
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} |
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|
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check_use() { |
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for var in $@; do |
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if use ${var}; then |
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printf -v "USE_$var" True |
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else |
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printf -v "USE_$var" False |
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fi |
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shift |
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done |
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} |