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commit: deaa21ff2b928318d0e1b8fe45aa404411f08086 |
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Author: David Seifert <soap <AT> gentoo <DOT> org> |
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AuthorDate: Sun Mar 27 23:52:51 2016 +0000 |
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Commit: David Seifert <soap <AT> gentoo <DOT> org> |
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CommitDate: Sun Mar 27 23:52:51 2016 +0000 |
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URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=deaa21ff |
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|
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sci-biology/samtools: Move to SLOT="0.1-legacy" for future legacy versions |
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|
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Package-Manager: portage-2.2.28 |
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|
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.../samtools/files/samtools-0.1.20-buildsystem.patch | 20 ++++++++++---------- |
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...tools-0.1.20.ebuild => samtools-0.1.20-r1.ebuild} | 2 +- |
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2 files changed, 11 insertions(+), 11 deletions(-) |
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|
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diff --git a/sci-biology/samtools/files/samtools-0.1.20-buildsystem.patch b/sci-biology/samtools/files/samtools-0.1.20-buildsystem.patch |
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index dfdd890..eb9f693 100644 |
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--- a/sci-biology/samtools/files/samtools-0.1.20-buildsystem.patch |
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+++ b/sci-biology/samtools/files/samtools-0.1.20-buildsystem.patch |
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@@ -75,15 +75,15 @@ |
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.PHONY:all-recur lib-recur clean-recur cleanlocal-recur install-recur |
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|
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-lib:libbam.a |
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-+lib:libbam-legacy.a |
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++lib:libbam-0.1-legacy.a |
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|
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-libbam.a:$(LOBJS) |
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-+libbam-legacy.a:$(LOBJS) |
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++libbam-0.1-legacy.a:$(LOBJS) |
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$(AR) -csru $@ $(LOBJS) |
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|
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samtools:lib-recur $(AOBJS) |
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- $(CC) $(CFLAGS) -o $@ $(AOBJS) $(LDFLAGS) libbam.a -Lbcftools -lbcf $(LIBPATH) $(LIBCURSES) -lm -lz -lpthread |
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-+ $(CC) $(CFLAGS) $(LDFLAGS) -o $@ $(AOBJS) libbam-legacy.a -Lbcftools -lbcf $(LIBPATH) $(LIBCURSES) -lm -lz -lpthread |
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++ $(CC) $(CFLAGS) $(LDFLAGS) -o $@ $(AOBJS) -L. -lbam-0.1-legacy -Lbcftools -lbcf $(LIBPATH) $(LIBCURSES) -lm -lz -lpthread |
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|
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razip:razip.o razf.o $(KNETFILE_O) |
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- $(CC) $(CFLAGS) -o $@ $^ -lz |
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@@ -105,21 +105,21 @@ |
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|
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-libbam.1.dylib-local:$(LOBJS) |
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- libtool -dynamic $(LOBJS) -o libbam.1.dylib -lc -lz |
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-+libbam-legacy.1.dylib-local:$(LOBJS) |
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-+ libtool -dynamic $(LOBJS) -o libbam-legacy.1.dylib -lc -lz |
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++libbam-0.1-legacy.1.dylib-local:$(LOBJS) |
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++ libtool -dynamic $(LOBJS) -o libbam-0.1-legacy.1.dylib -lc -lz |
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|
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-libbam.so.1-local:$(LOBJS) |
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- $(CC) -shared -Wl,-soname,libbam.so -o libbam.so.1 $(LOBJS) -lc -lz |
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-+libbam-legacy.so.1-local:$(LOBJS) |
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-+ $(CC) $(LDFLAGS) -shared -Wl,-soname,libbam-legacy.so -o libbam-legacy.so.1 $(LOBJS) -lc -lz -lm -lpthread |
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++libbam-0.1-legacy.so.1-local:$(LOBJS) |
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++ $(CC) $(LDFLAGS) -shared -Wl,-soname,libbam-0.1-legacy.so -o libbam-0.1-legacy.so.1 $(LOBJS) -lc -lz -lm -lpthread |
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|
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dylib: |
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@$(MAKE) cleanlocal; \ |
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case `uname` in \ |
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- Linux) $(MAKE) CFLAGS="$(CFLAGS) -fPIC" libbam.so.1-local;; \ |
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- Darwin) $(MAKE) CFLAGS="$(CFLAGS) -fPIC" libbam.1.dylib-local;; \ |
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-+ Linux) $(MAKE) CFLAGS="$(CFLAGS) -fPIC" libbam-legacy.so.1-local;; \ |
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-+ Darwin) $(MAKE) CFLAGS="$(CFLAGS) -fPIC" libbam-legacy.1.dylib-local;; \ |
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++ Linux) $(MAKE) CFLAGS="$(CFLAGS) -fPIC" libbam-0.1-legacy.so.1-local;; \ |
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++ Darwin) $(MAKE) CFLAGS="$(CFLAGS) -fPIC" libbam-0.1-legacy.1.dylib-local;; \ |
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*) echo 'Unknown OS';; \ |
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esac |
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|
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@@ -162,7 +162,7 @@ |
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|
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bamcheck:bamcheck.o |
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- $(CC) $(CFLAGS) -o $@ bamcheck.o -L.. -lm -lbam -lpthread -lz |
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-+ $(CC) $(CFLAGS) $(LDFLAGS) -o $@ bamcheck.o -L.. -lm -lbam-legacy -lpthread -lz |
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++ $(CC) $(CFLAGS) $(LDFLAGS) -o $@ bamcheck.o -L.. -lm -lbam-0.1-legacy -lpthread -lz |
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|
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bamcheck.o:bamcheck.c ../faidx.h ../khash.h ../sam.h ../razf.h |
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$(CC) $(CFLAGS) -c -I.. -o $@ bamcheck.c |
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|
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diff --git a/sci-biology/samtools/samtools-0.1.20.ebuild b/sci-biology/samtools/samtools-0.1.20-r1.ebuild |
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similarity index 99% |
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rename from sci-biology/samtools/samtools-0.1.20.ebuild |
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rename to sci-biology/samtools/samtools-0.1.20-r1.ebuild |
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index 3ee9956..744d15f 100644 |
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--- a/sci-biology/samtools/samtools-0.1.20.ebuild |
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+++ b/sci-biology/samtools/samtools-0.1.20-r1.ebuild |
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@@ -13,7 +13,7 @@ HOMEPAGE="http://samtools.sourceforge.net/" |
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SRC_URI="https://github.com/samtools/samtools/archive/${PV}.tar.gz -> ${P}.tar.gz" |
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|
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LICENSE="MIT" |
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-SLOT="legacy" |
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+SLOT="0.1-legacy" |
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KEYWORDS="~amd64 ~x86 ~amd64-linux ~x86-linux ~x64-macos" |
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IUSE="examples" |
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