Gentoo Archives: gentoo-commits

From: "Andrey Kislyuk (weaver)" <weaver@g.o>
To: gentoo-commits@l.g.o
Subject: [gentoo-commits] gentoo-x86 commit in sci-biology/recon: metadata.xml ChangeLog recon-1.06.ebuild
Date: Thu, 03 Feb 2011 01:58:58
Message-Id: 20110203015847.ECAC820054@flycatcher.gentoo.org
1 weaver 11/02/03 01:58:47
2
3 Added: metadata.xml ChangeLog recon-1.06.ebuild
4 Log:
5 New package, dependency of sci-biology/repeatmodeler. Ebuild written by me
6
7 (Portage version: 2.2_rc86/cvs/Linux x86_64)
8
9 Revision Changes Path
10 1.1 sci-biology/recon/metadata.xml
11
12 file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/recon/metadata.xml?rev=1.1&view=markup
13 plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/recon/metadata.xml?rev=1.1&content-type=text/plain
14
15 Index: metadata.xml
16 ===================================================================
17 <?xml version="1.0" encoding="UTF-8"?>
18 <!DOCTYPE pkgmetadata SYSTEM "http://www.gentoo.org/dtd/metadata.dtd">
19 <pkgmetadata>
20 <maintainer>
21 <email>weaver@g.o</email>
22 <name>Andrey Kislyuk</name>
23 </maintainer>
24 <herd>sci-biology</herd>
25 </pkgmetadata>
26
27
28
29 1.1 sci-biology/recon/ChangeLog
30
31 file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/recon/ChangeLog?rev=1.1&view=markup
32 plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/recon/ChangeLog?rev=1.1&content-type=text/plain
33
34 Index: ChangeLog
35 ===================================================================
36 # ChangeLog for sci-biology/recon
37 # Copyright 1999-2011 Gentoo Foundation; Distributed under the GPL v2
38 # $Header: /var/cvsroot/gentoo-x86/sci-biology/recon/ChangeLog,v 1.1 2011/02/03 01:58:47 weaver Exp $
39
40 *recon-1.06 (03 Feb 2011)
41
42 03 Feb 2011; Andrey Kislyuk <weaver@g.o> +recon-1.06.ebuild,
43 +metadata.xml:
44 New package, dependency of sci-biology/repeatmodeler. Ebuild written by me
45
46
47
48
49 1.1 sci-biology/recon/recon-1.06.ebuild
50
51 file : http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/recon/recon-1.06.ebuild?rev=1.1&view=markup
52 plain: http://sources.gentoo.org/viewvc.cgi/gentoo-x86/sci-biology/recon/recon-1.06.ebuild?rev=1.1&content-type=text/plain
53
54 Index: recon-1.06.ebuild
55 ===================================================================
56 # Copyright 1999-2011 Gentoo Foundation
57 # Distributed under the terms of the GNU General Public License v2
58 # $Header: /var/cvsroot/gentoo-x86/sci-biology/recon/recon-1.06.ebuild,v 1.1 2011/02/03 01:58:47 weaver Exp $
59
60 EAPI="3"
61
62 DESCRIPTION="Automated de novo identification of repeat families from genomic sequences"
63 HOMEPAGE="http://selab.janelia.org/recon.html
64 http://www.repeatmasker.org/RepeatModeler.html"
65 SRC_URI="http://www.repeatmasker.org/RECON${PV}.tar.gz"
66
67 LICENSE="GPL-2"
68 SLOT="0"
69 IUSE=""
70 KEYWORDS="~amd64 ~x86"
71
72 DEPEND=""
73 RDEPEND="${DEPEND}"
74
75 S="${WORKDIR}/RECON${PV}"
76
77 src_prepare() {
78 sed -i 's|$path = "";|$path = "/usr/libexec/'${PN}'";|' scripts/recon.pl || die
79 }
80
81 src_compile() {
82 emake -C src || die
83 }
84
85 src_install() {
86 dobin scripts/* || die
87 exeinto /usr/libexec/${PN}
88 doexe src/{edgeredef,eledef,eleredef,famdef,imagespread} || die
89 dodoc 00README
90 insinto /usr/share/${PN}
91 doins -r Demos
92 }