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commit: c13cb5aef5770ba3e947fb4891b955ce1ebd6b71 |
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Author: Mark Wright <gienah <AT> gentoo <DOT> org> |
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AuthorDate: Mon Jul 2 11:28:58 2018 +0000 |
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Commit: Mark Wright <gienah <AT> gentoo <DOT> org> |
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CommitDate: Tue Jul 3 00:47:24 2018 +0000 |
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URL: https://gitweb.gentoo.org/repo/gentoo.git/commit/?id=c13cb5ae |
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|
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dev-lang/R: Bump to 3.5.1 RC |
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|
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Thanks to Neil for reporting, John Dough and Daniel M. Weeks for commenting. |
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Bug: https://bugs.gentoo.org/632364 |
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Package-Manager: Portage-2.3.41, Repoman-2.3.9 |
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|
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dev-lang/R/Manifest | 1 + |
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dev-lang/R/R-3.5.1_rc.ebuild | 207 +++++++++++++++++++++++++++++++++++++++++++ |
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2 files changed, 208 insertions(+) |
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|
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diff --git a/dev-lang/R/Manifest b/dev-lang/R/Manifest |
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index bf671c6578e..d69ac509af6 100644 |
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--- a/dev-lang/R/Manifest |
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+++ b/dev-lang/R/Manifest |
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@@ -3,3 +3,4 @@ DIST R-3.2.2.tar.gz 29772864 BLAKE2B f3f7ff9b9bd3cf685712e8997dd5a511a47e56ed261 |
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DIST R-3.3.2.tar.gz 29440670 BLAKE2B 37308fb0caf19c33196b496d5b6f2f1b5b6f75e3ed985f2f0c4b0633d6191181de7f4cbd1ec986d76089a101d8895493cfe3b8563cfbc36f0b72a1ea14c748c5 SHA512 06a98687c0b180cb0bfd57440ea26088212d9f48948d503136475bf54b42d72cfec5bea7e333c0cedd60733bd614dd0f8c2eced7e24478b6c89f48e8d0c43482 |
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DIST R-3.4.1.tar.gz 30200109 BLAKE2B 03602e9a48759caee8ce047fa6273df7a54af089de4489e21953c0e3fc7bfdf720d924f1e0167d3dbf65f63ed42ac10dea8b45289b921cda1c0e6d25a0063ebb SHA512 19bd50c87dc001ef947c15c1760f27ac8986ff6b43c6d90d3093ae184e42963027ef06faf31ec57ac9e519af7a35a2f53f8ea23ef75d800ebbd02945cedc4651 |
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DIST R-78d6830e28ea90a046da79a9b4f70c39594bb6d6.bash_completion 13596 BLAKE2B 53338e4a1c4f68beb69247216e553dbcac47f660fbf032bfebf7a660e32d2cff5b11ed35411c52de7e1fd6e00bbf5b5ea19369a325fa0a38bd93d63dc3288cbd SHA512 9ccd19bb1b0c18a2f13035ccd6809447429e197e298fb4d1df808ef345d723b42f75a1b91c349f6dbb46e4a82e59ef33e11300c495d79b63d670d0c0f2b16a06 |
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+DIST R-patched_2018-06-29.tar.gz 29775566 BLAKE2B 905f2cacd01d151f4d35f1dcba5cdc850958f1dae2ecb334932ec652dad5f964ed861c54878dfee2b6c2880d4ea7894e1e71384975d90a2653f9289fa94e6f82 SHA512 2dafcd57e7821f5ccbce44915e312d24f13de35e6c9ece13185c941de1f4c71e52151a44dc0ad801fac90e0955a26d5c6b47d89656c07cddf4959b34a935d0f9 |
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|
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diff --git a/dev-lang/R/R-3.5.1_rc.ebuild b/dev-lang/R/R-3.5.1_rc.ebuild |
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new file mode 100644 |
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index 00000000000..c77d3ebacb4 |
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--- /dev/null |
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+++ b/dev-lang/R/R-3.5.1_rc.ebuild |
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@@ -0,0 +1,207 @@ |
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+# Copyright 1999-2018 Gentoo Foundation |
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+# Distributed under the terms of the GNU General Public License v2 |
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+ |
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+EAPI=6 |
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+ |
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+inherit bash-completion-r1 autotools eutils flag-o-matic fortran-2 multilib versionator toolchain-funcs |
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+ |
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+# latest git commit for R bash completion: https://github.com/deepayan/rcompletion |
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+BCPV=78d6830e28ea90a046da79a9b4f70c39594bb6d6 |
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+ |
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+DESCRIPTION="Language and environment for statistical computing and graphics" |
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+HOMEPAGE="http://www.r-project.org/" |
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+# This release candidate is not on the CRAN mirrors |
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+SRC_URI=" |
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+ https://stat.ethz.ch/R/daily/R-patched_2018-06-29.tar.gz |
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+ https://raw.githubusercontent.com/deepayan/rcompletion/${BCPV}/bash_completion/R -> ${PN}-${BCPV}.bash_completion" |
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+ |
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+LICENSE="|| ( GPL-2 GPL-3 ) LGPL-2.1" |
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+SLOT="0" |
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+KEYWORDS="~amd64 ~hppa ~ia64 ~ppc ~ppc64 ~sparc ~x86 ~x86-fbsd ~amd64-linux ~x86-linux ~x64-macos" |
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+IUSE="cairo doc icu java jpeg lapack minimal nls openmp perl png prefix profile readline static-libs tiff tk X" |
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+REQUIRED_USE="png? ( || ( cairo X ) ) jpeg? ( || ( cairo X ) ) tiff? ( || ( cairo X ) )" |
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+ |
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+CDEPEND=" |
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+ app-arch/bzip2:0= |
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+ app-arch/xz-utils:0= |
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+ app-text/ghostscript-gpl |
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+ >=dev-libs/libpcre-8.35:3= |
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+ net-misc/curl |
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+ virtual/blas:0 |
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+ || ( >=sys-apps/coreutils-8.15 sys-freebsd/freebsd-bin app-misc/realpath ) |
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+ cairo? ( x11-libs/cairo:0=[X] x11-libs/pango:0= ) |
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+ icu? ( dev-libs/icu:= ) |
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+ jpeg? ( virtual/jpeg:0 ) |
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+ lapack? ( virtual/lapack:0 ) |
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+ perl? ( dev-lang/perl ) |
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+ png? ( media-libs/libpng:0= ) |
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+ readline? ( sys-libs/readline:0= ) |
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+ tiff? ( media-libs/tiff:0= ) |
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+ tk? ( dev-lang/tk:0= ) |
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+ X? ( x11-libs/libXmu:0= x11-misc/xdg-utils )" |
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+ |
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+DEPEND="${CDEPEND} |
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+ virtual/pkgconfig |
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+ doc? ( |
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+ virtual/latex-base |
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+ dev-texlive/texlive-fontsrecommended |
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+ )" |
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+ |
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+RDEPEND="${CDEPEND} |
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+ >=sys-libs/zlib-1.2.5.1-r2:0[minizip] |
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+ java? ( >=virtual/jre-1.5 )" |
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+ |
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+RESTRICT="minimal? ( test )" |
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+ |
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+PATCHES=( |
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+ "${FILESDIR}"/${PN}-3.4.1-parallel.patch |
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+ "${FILESDIR}"/${PN}-3.4.1-rmath-shared.patch |
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+) |
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+ |
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+S="${WORKDIR}/R-rc" |
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+ |
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+pkg_pretend() { |
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+ [[ ${MERGE_TYPE} != binary ]] && use openmp && tc-check-openmp |
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+} |
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+ |
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+pkg_setup() { |
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+ if [[ ${MERGE_TYPE} != binary ]] && use openmp; then |
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+ if ! tc-check-openmp; then |
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+ ewarn "OpenMP is not available in your current selected compiler" |
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+ die "need openmp capable compiler" |
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+ fi |
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+ FORTRAN_NEED_OPENMP=1 |
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+ fi |
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+ fortran-2_pkg_setup |
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+ filter-ldflags -Wl,-Bdirect -Bdirect |
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+ # avoid using existing R installation |
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+ unset R_HOME |
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+ # Temporary fix for bug #419761 |
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+ if [[ ($(tc-getCC) == *gcc) && ($(gcc-version) == 4.7) ]]; then |
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+ append-flags -fno-ipa-cp-clone |
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+ fi |
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+} |
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+ |
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+src_prepare() { |
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+ default |
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+ |
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+ # fix packages.html for doc (gentoo bug #205103) |
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+ sed -e "s:../../../library:../../../../$(get_libdir)/R/library:g" \ |
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+ -i src/library/tools/R/Rd.R || die |
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+ |
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+ # fix Rscript path when installed (gentoo bug #221061) |
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+ sed -e "s:-DR_HOME='\"\$(rhome)\"':-DR_HOME='\"${EROOT%/}/usr/$(get_libdir)/${PN}\"':" \ |
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+ -i src/unix/Makefile.in || die "sed unix Makefile failed" |
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+ |
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+ # fix HTML links to manual (gentoo bug #273957) |
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+ sed -e 's:\.\./manual/:manual/:g' \ |
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+ -i $(grep -Flr ../manual/ doc) || die "sed for HTML links failed" |
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+ |
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+ use lapack && \ |
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+ export LAPACK_LIBS="$($(tc-getPKG_CONFIG) --libs lapack)" |
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+ |
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+ if use X; then |
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+ export R_BROWSER="$(type -p xdg-open)" |
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+ export R_PDFVIEWER="$(type -p xdg-open)" |
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+ fi |
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+ use perl && \ |
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+ export PERL5LIB="${S}/share/perl:${PERL5LIB:+:}${PERL5LIB}" |
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+ |
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+ # don't search /usr/local |
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+ sed -i -e '/FLAGS=.*\/local\//c\: # removed by ebuild' configure.ac || die |
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+ # Fix for Darwin (OS X) |
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+ if use prefix; then |
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+ if [[ ${CHOST} == *-darwin* ]] ; then |
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+ sed -e 's:-install_name libR.dylib:-install_name ${libdir}/R/lib/libR.dylib:' \ |
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+ -e 's:-install_name libRlapack.dylib:-install_name ${libdir}/R/lib/libRlapack.dylib:' \ |
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+ -e 's:-install_name libRblas.dylib:-install_name ${libdir}/R/lib/libRblas.dylib:' \ |
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+ -e "/SHLIB_EXT/s/\.so/.dylib/" \ |
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+ -i configure.ac || die |
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+ # sort of "undo" 2.14.1-rmath-shared.patch |
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+ sed -e "s:-Wl,-soname=libRmath.so:-install_name ${EROOT%/}/usr/$(get_libdir)/libRmath.dylib:" \ |
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+ -i src/nmath/standalone/Makefile.in || die |
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+ else |
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+ append-ldflags -Wl,-rpath="${EROOT%/}/usr/$(get_libdir)/R/lib" |
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+ fi |
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+ fi |
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+ AT_M4DIR=m4 |
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+ eautoreconf |
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+} |
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+ |
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+src_configure() { |
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+ # --with-system-tre \ |
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+ # tre is patched from upstream |
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+ econf \ |
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+ --enable-byte-compiled-packages \ |
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+ --enable-R-shlib \ |
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+ --disable-R-framework \ |
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+ --with-blas="$($(tc-getPKG_CONFIG) --libs blas)" \ |
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+ --docdir="${EPREFIX}/usr/share/doc/${PF}" \ |
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+ rdocdir="${EPREFIX}/usr/share/doc/${PF}" \ |
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+ $(use_enable java) \ |
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+ $(use_enable nls) \ |
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+ $(use_enable openmp) \ |
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+ $(use_enable profile R-profiling) \ |
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+ $(use_enable profile memory-profiling) \ |
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+ $(use_enable static-libs static) \ |
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+ $(use_enable static-libs R-static-lib) \ |
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+ $(use_with cairo) \ |
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+ $(use_with icu ICU) \ |
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+ $(use_with jpeg jpeglib) \ |
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+ $(use_with lapack) \ |
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+ $(use_with !minimal recommended-packages) \ |
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+ $(use_with png libpng) \ |
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+ $(use_with readline) \ |
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+ $(use_with tiff libtiff) \ |
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+ $(use_with tk tcltk) \ |
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+ $(use_with tk tk-config "${EPREFIX}"/usr/$(get_libdir)/tkConfig.sh) \ |
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+ $(use_with tk tcl-config "${EPREFIX}"/usr/$(get_libdir)/tclConfig.sh) \ |
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+ $(use_with X x) |
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+} |
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+ |
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+src_compile() { |
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+ export VARTEXFONTS="${T}/fonts" |
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+ emake AR="$(tc-getAR)" |
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+ emake -C src/nmath/standalone \ |
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+ shared $(use static-libs && echo static) AR="$(tc-getAR)" |
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+ use doc && emake info pdf |
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+} |
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+ |
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+src_install() { |
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+ default |
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+ emake -j1 -C src/nmath/standalone DESTDIR="${D}" install |
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+ |
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+ if use doc; then |
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+ emake DESTDIR="${D}" install-info install-pdf |
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+ dosym ../manual /usr/share/doc/${PF}/html/manual |
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+ fi |
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+ |
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+ cat > 99R <<-EOF |
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+ LDPATH=${EROOT%/}/usr/$(get_libdir)/${PN}/lib |
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+ R_HOME=${EROOT%/}/usr/$(get_libdir)/${PN} |
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+ EOF |
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+ doenvd 99R |
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+ newbashcomp "${DISTDIR}"/${PN}-${BCPV}.bash_completion ${PN} |
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+ # The buildsystem has a different understanding of install_names than |
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+ # we require. Since it builds modules like shared objects (wrong), many |
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+ # objects (all modules) get an incorrect install_name. Fixing the build |
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+ # system here is not really trivial. |
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+ if [[ ${CHOST} == *-darwin* ]] ; then |
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+ local mod |
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+ pushd "${ED}"/usr/$(get_libdir)/R > /dev/null |
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+ for mod in $(find . -name "*.dylib") ; do |
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+ mod=${mod#./} |
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+ install_name_tool -id "${EPREFIX}/usr/$(get_libdir)/R/${mod}" \ |
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+ "${mod}" |
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+ done |
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+ popd > /dev/null |
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+ fi |
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+ docompress -x /usr/share/doc/${PF}/{BioC_mirrors.csv,CRAN_mirrors.csv,KEYWORDS.db,NEWS.rds} |
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+} |
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+ |
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+pkg_postinst() { |
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+ if use java; then |
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+ einfo "Re-initializing java paths for ${P}" |
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+ R CMD javareconf |
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+ fi |
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+} |
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